Wall clock time and date at job start Mon Mar 30 2020 02:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35704 * 116.99398 * 2 1 4 4 C 1.38910 * 119.74314 * 179.97438 * 3 2 1 5 5 C 1.38383 * 120.00436 * 179.97438 * 4 3 2 6 6 N 1.38837 * 120.24401 * 179.97438 * 5 4 3 7 7 C 1.41659 * 119.51060 * 0.02562 * 5 4 3 8 8 C 1.40908 * 120.24771 * 180.02562 * 7 5 4 9 9 H 1.08000 * 119.99625 * 226.10603 * 8 7 5 10 10 C 1.39846 * 120.00314 * 46.10744 * 8 7 5 11 11 N 1.30961 * 119.99903 * 16.19224 * 10 8 7 12 12 Si 1.86799 * 120.00226 * 196.19151 * 10 8 7 13 13 H 1.48504 * 109.46897 * 60.00009 * 12 10 8 14 14 H 1.48496 * 109.47416 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47441 * 300.00270 * 12 10 8 16 16 C 1.40902 * 119.49579 * 359.97438 * 7 5 4 17 17 Cl 1.73605 * 120.00603 * 180.02562 * 16 7 5 18 18 C 1.36454 * 119.98166 * 359.72315 * 16 7 5 19 19 H 1.09000 * 109.46713 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47317 * 299.99663 * 1 2 3 21 21 H 1.09001 * 109.47158 * 60.00074 * 1 2 3 22 22 H 1.07999 * 119.99645 * 359.97438 * 4 3 2 23 23 H 0.97000 * 119.99921 * 0.02562 * 6 5 4 24 24 H 0.97005 * 120.00042 * 180.02562 * 6 5 4 25 25 H 0.97007 * 119.99844 * 184.06064 * 11 10 8 26 26 H 1.07997 * 119.75233 * 180.26890 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4325 1.2758 0.0005 5 6 4.0662 2.5060 0.0000 6 7 5.4527 2.5784 0.0011 7 6 3.2899 3.6909 -0.0005 8 6 3.9190 4.9517 -0.0016 9 1 3.5800 5.7249 0.6720 10 6 4.9822 5.2020 -0.8749 11 7 5.1926 4.4079 -1.8948 12 14 6.1023 6.6689 -0.5867 13 1 6.7521 6.5418 0.7426 14 1 7.1439 6.7118 -1.6442 15 1 5.3017 7.9189 -0.6287 16 6 1.8838 3.5990 -0.0011 17 17 0.9195 5.0426 -0.0024 18 6 1.2805 2.3752 -0.0068 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 4.0167 0.3675 0.0014 23 1 5.9808 1.7648 0.0018 24 1 5.8933 3.4426 0.0011 25 1 5.9641 4.5465 -2.4664 26 1 0.2025 2.3091 -0.0116 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715838.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:59 Heat of formation + Delta-G solvation = -42.306229 kcal Electronic energy + Delta-G solvation = -13579.802420 eV Core-core repulsion = 11069.608559 eV Total energy + Delta-G solvation = -2510.193861 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.59106 -38.68364 -36.96294 -35.16097 -34.07080 -31.27259 -29.76438 -27.86628 -26.29425 -22.86639 -22.26993 -19.27765 -18.71829 -17.71857 -16.82918 -16.35389 -16.17688 -16.05033 -15.33216 -14.69128 -14.25264 -14.00635 -13.73181 -13.11608 -12.86913 -12.69427 -12.54746 -12.34502 -11.96246 -11.80872 -11.60907 -11.27348 -10.84077 -10.35167 -8.85024 -8.47893 -7.97822 -6.11614 0.84743 1.11248 1.45197 1.49190 1.53400 1.79214 2.31821 2.69548 2.81616 3.51344 3.70059 4.41702 4.48920 4.51220 4.67238 4.79219 4.86418 5.23784 5.28391 5.41328 5.66058 5.89582 5.95375 6.47752 6.72891 6.84748 7.07562 7.19894 7.50783 8.56766 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.032368 B = 0.010622 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.847759 B = 2635.496333 C = 3346.122425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.336 6.336 3 C 0.095 3.905 4 C -0.241 4.241 5 C 0.226 3.774 6 N -0.842 5.842 7 C 0.009 3.991 8 C -0.495 4.495 9 H 0.066 0.934 10 C 0.039 3.961 11 N -0.839 5.839 12 Si 0.956 3.044 13 H -0.259 1.259 14 H -0.274 1.274 15 H -0.274 1.274 16 C -0.059 4.059 17 Cl -0.099 7.099 18 C -0.242 4.242 19 H 0.122 0.878 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.122 0.878 23 H 0.390 0.610 24 H 0.398 0.602 25 H 0.280 0.720 26 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 -3.982 2.561 5.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.251 6.251 3 C 0.050 3.950 4 C -0.266 4.266 5 C 0.117 3.883 6 N -0.381 5.381 7 C 0.004 3.996 8 C -0.528 4.528 9 H 0.084 0.916 10 C -0.171 4.171 11 N -0.469 5.469 12 Si 0.779 3.221 13 H -0.183 1.183 14 H -0.198 1.198 15 H -0.199 1.199 16 C -0.088 4.088 17 Cl -0.070 7.070 18 C -0.264 4.264 19 H 0.140 0.860 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.140 0.860 23 H 0.218 0.782 24 H 0.230 0.770 25 H 0.090 0.910 26 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.356 -4.026 2.333 5.216 hybrid contribution 0.457 1.028 -0.137 1.133 sum -1.899 -2.998 2.196 4.173 Atomic orbital electron populations 1.23163 0.77636 1.04780 1.01360 1.85866 1.22497 1.26765 1.89960 1.18246 0.91230 0.83375 1.02176 1.19568 0.91943 0.96173 1.18871 1.17655 0.85182 0.91687 0.93778 1.42121 1.02519 1.10463 1.83006 1.17200 0.89426 0.93511 0.99507 1.18971 1.16160 0.98025 1.19596 0.91570 1.26196 0.98458 0.99522 0.92950 1.69986 1.26493 1.38904 1.11565 0.85646 0.78198 0.79318 0.78956 1.18310 1.19849 1.19916 1.20407 0.91178 0.85684 1.11533 1.98203 1.70999 1.40486 1.97350 1.20238 0.99309 0.90596 1.16233 0.86002 0.92738 0.93132 0.86011 0.78179 0.76984 0.90955 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.80 113.37 1.11 1.79 15 2 O -0.34 -12.56 10.48 -90.24 -0.95 -13.50 15 3 C 0.10 4.13 6.70 22.72 0.15 4.29 15 4 C -0.24 -10.76 9.81 22.47 0.22 -10.54 15 5 C 0.23 10.81 6.25 38.91 0.24 11.06 15 6 N -0.84 -35.68 8.03 -50.48 -0.41 -36.08 15 7 C 0.01 0.47 5.26 -21.13 -0.11 0.36 15 8 C -0.49 -25.75 7.76 23.31 0.18 -25.57 15 9 H 0.07 3.50 7.75 -2.91 -0.02 3.47 15 10 C 0.04 1.90 3.48 85.21 0.30 2.20 15 11 N -0.84 -42.38 11.38 21.82 0.25 -42.13 15 12 Si 0.96 37.92 29.59 68.60 2.03 39.95 15 13 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 14 H -0.27 -10.41 7.11 99.48 0.71 -9.71 15 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 16 C -0.06 -2.87 6.33 22.51 0.14 -2.73 15 17 Cl -0.10 -4.38 27.94 -2.72 -0.08 -4.46 15 18 C -0.24 -10.66 8.72 22.14 0.19 -10.47 15 19 H 0.12 2.37 8.14 -2.39 -0.02 2.35 15 20 H 0.05 1.40 7.66 -2.39 -0.02 1.38 15 21 H 0.05 1.34 7.63 -2.39 -0.02 1.32 15 22 H 0.12 4.89 8.06 -2.91 -0.02 4.87 15 23 H 0.39 13.80 8.83 -92.71 -0.82 12.98 15 24 H 0.40 17.44 5.61 -92.70 -0.52 16.92 15 25 H 0.28 13.12 8.30 -92.70 -0.77 12.35 15 26 H 0.13 4.88 6.24 -2.91 -0.02 4.86 15 Total: -1.00 -57.77 241.09 3.17 -54.60 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.11 Total: 31.25 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 2.43 Total: -29.62 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -0.16 Total: -78.21 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.95 Total: -13.50 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Atomic # 17 Polarization: -4.38 SS G_CDS: -0.08 Total: -4.46 kcal Total: -57.77 3.17 -54.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715838.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.292 kcal (2) G-P(sol) polarization free energy of solvation -57.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds