Wall clock time and date at job start Mon Mar 30 2020 03:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35766 * 116.99845 * 2 1 4 4 C 1.39054 * 120.22031 * 90.00307 * 3 2 1 5 5 N 1.40002 * 119.96995 * 359.69941 * 4 3 2 6 6 C 1.38777 * 120.05946 * 179.72617 * 4 3 2 7 7 C 1.38922 * 120.51260 * 0.02562 * 6 4 3 8 8 Cl 1.73596 * 119.78400 * 179.97438 * 7 6 4 9 9 C 1.37544 * 120.43900 * 0.02562 * 7 6 4 10 10 C 1.40837 * 119.92865 * 359.95362 * 9 7 6 11 11 C 1.41175 * 120.25010 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99617 * 154.44233 * 11 10 9 13 13 C 1.39909 * 119.99953 * 334.43618 * 11 10 9 14 14 N 1.30876 * 120.00251 * 343.20454 * 13 11 10 15 15 Si 1.86808 * 119.99754 * 163.20821 * 13 11 10 16 16 H 1.48498 * 109.46884 * 90.00229 * 15 13 11 17 17 H 1.48500 * 109.46790 * 209.99704 * 15 13 11 18 18 H 1.48493 * 109.47128 * 329.99771 * 15 13 11 19 19 H 1.09006 * 109.46970 * 60.00024 * 1 2 3 20 20 H 1.08996 * 109.46731 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47023 * 300.00161 * 1 2 3 22 22 H 0.97006 * 119.99984 * 359.97438 * 5 4 3 23 23 H 0.97006 * 120.00231 * 180.02562 * 5 4 3 24 24 H 1.08006 * 119.74665 * 180.02562 * 6 4 3 25 25 H 1.08001 * 120.03446 * 179.97438 * 9 7 6 26 26 H 0.96997 * 119.99829 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 2.3632 1.8333 1.2016 5 7 2.0416 1.2160 2.4163 6 6 2.9983 3.0672 1.1977 7 6 3.3216 3.6903 -0.0011 8 17 4.1153 5.2341 0.0161 9 6 3.0159 3.0927 -1.2017 10 6 2.3719 1.8404 -1.2194 11 6 2.0555 1.2206 -2.4477 12 1 1.9569 0.1464 -2.5009 13 6 1.8696 1.9980 -3.5960 14 7 1.6611 3.2855 -3.4880 15 14 1.9189 1.1980 -5.2834 16 1 0.5525 0.7571 -5.6623 17 1 2.4172 2.1783 -6.2815 18 1 2.8263 0.0231 -5.2479 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3632 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.5970 0.3539 2.4195 23 1 2.2627 1.6508 3.2548 24 1 3.2431 3.5468 2.1339 25 1 3.2699 3.5832 -2.1298 26 1 1.5318 3.8243 -4.2841 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715895.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:59 Heat of formation + Delta-G solvation = -52.557312 kcal Electronic energy + Delta-G solvation = -13588.047426 eV Core-core repulsion = 11077.409044 eV Total energy + Delta-G solvation = -2510.638382 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.35726 -37.89397 -36.84574 -36.21179 -34.17666 -31.16737 -29.13335 -27.67393 -26.70994 -22.89235 -22.39553 -19.34862 -18.20038 -17.87861 -17.14099 -16.46656 -16.02401 -15.70328 -15.29933 -14.66034 -14.42148 -13.92931 -13.56098 -13.22166 -12.87726 -12.66917 -12.50124 -12.36854 -12.05854 -11.83907 -11.48977 -11.25339 -10.61310 -10.41925 -9.24205 -8.69756 -8.08893 -6.39804 0.72138 1.10731 1.39855 1.49951 1.53181 1.56471 2.20213 2.63168 3.20331 3.32845 3.78470 4.52837 4.63841 4.77534 4.88403 4.96379 5.04775 5.17350 5.26089 5.54999 5.82353 5.89130 6.07777 6.41006 6.64448 6.75019 6.89363 7.24803 7.32357 8.26762 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.020746 B = 0.012845 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.304372 B = 2179.384014 C = 3382.041446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.330 6.330 3 C -0.120 4.120 4 C 0.237 3.763 5 N -0.866 5.866 6 C -0.301 4.301 7 C 0.024 3.976 8 Cl -0.100 7.100 9 C -0.210 4.210 10 C 0.109 3.891 11 C -0.468 4.468 12 H 0.079 0.921 13 C 0.037 3.963 14 N -0.810 5.810 15 Si 0.981 3.019 16 H -0.260 1.260 17 H -0.265 1.265 18 H -0.259 1.259 19 H 0.020 0.980 20 H 0.105 0.895 21 H 0.037 0.963 22 H 0.400 0.600 23 H 0.402 0.598 24 H 0.125 0.875 25 H 0.112 0.888 26 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.973 -1.846 4.129 4.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.246 6.246 3 C -0.169 4.169 4 C 0.131 3.869 5 N -0.408 5.408 6 C -0.325 4.325 7 C -0.003 4.003 8 Cl -0.071 7.071 9 C -0.231 4.231 10 C 0.105 3.895 11 C -0.496 4.496 12 H 0.097 0.903 13 C -0.180 4.180 14 N -0.434 5.434 15 Si 0.801 3.199 16 H -0.185 1.185 17 H -0.189 1.189 18 H -0.183 1.183 19 H 0.039 0.961 20 H 0.123 0.877 21 H 0.055 0.945 22 H 0.229 0.771 23 H 0.232 0.768 24 H 0.143 0.857 25 H 0.130 0.870 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.864 -1.633 3.962 4.372 hybrid contribution -0.271 0.198 -0.459 0.569 sum -1.135 -1.435 3.503 3.952 Atomic orbital electron populations 1.22953 0.81877 1.02512 0.99140 1.85964 1.18932 1.25578 1.94127 1.18257 1.14018 0.93682 0.90957 1.17585 0.92540 0.90560 0.86172 1.42145 1.69776 1.24933 1.03955 1.19691 1.18416 0.98305 0.96121 1.20525 0.98476 0.86345 0.94979 1.98247 1.79450 1.30385 1.99046 1.20881 1.07666 0.99051 0.95548 1.17813 0.88282 0.90561 0.92816 1.19636 1.41948 0.95199 0.92807 0.90316 1.26811 0.91119 0.94981 1.05079 1.69895 1.32178 1.07777 1.33594 0.85216 0.79801 0.79170 0.75692 1.18487 1.18918 1.18328 0.96143 0.87706 0.94463 0.77117 0.76825 0.85731 0.87019 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 11.13 113.37 1.26 2.38 15 2 O -0.33 -14.78 8.95 -90.93 -0.81 -15.60 15 3 C -0.12 -5.86 5.78 23.17 0.13 -5.72 15 4 C 0.24 10.21 6.76 38.16 0.26 10.46 15 5 N -0.87 -28.19 9.09 -51.16 -0.47 -28.65 15 6 C -0.30 -13.04 9.66 22.56 0.22 -12.83 15 7 C 0.02 1.13 6.31 22.27 0.14 1.27 15 8 Cl -0.10 -4.03 28.94 -2.72 -0.08 -4.11 15 9 C -0.21 -11.06 8.44 22.74 0.19 -10.87 15 10 C 0.11 5.89 5.57 -21.22 -0.12 5.77 15 11 C -0.47 -24.90 8.71 23.40 0.20 -24.70 15 12 H 0.08 4.17 7.65 -2.91 -0.02 4.15 15 13 C 0.04 1.83 5.15 85.24 0.44 2.27 15 14 N -0.81 -41.43 10.96 21.82 0.24 -41.19 15 15 Si 0.98 37.56 29.59 68.60 2.03 39.59 15 16 H -0.26 -9.54 7.11 99.48 0.71 -8.83 15 17 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 19 H 0.02 0.83 8.14 -2.38 -0.02 0.81 15 20 H 0.10 3.06 8.14 -2.39 -0.02 3.04 15 21 H 0.04 1.26 8.14 -2.39 -0.02 1.24 15 22 H 0.40 12.07 8.19 -92.70 -0.76 11.31 15 23 H 0.40 10.56 8.84 -92.70 -0.82 9.74 15 24 H 0.12 4.71 8.06 -2.91 -0.02 4.69 15 25 H 0.11 6.18 6.20 -2.91 -0.02 6.16 15 26 H 0.29 13.45 8.30 -92.71 -0.77 12.68 15 Total: -1.00 -58.34 248.02 3.29 -55.05 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.35 Total: 26.87 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 2.73 Total: -31.97 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -0.23 Total: -69.84 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.81 Total: -15.60 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 17 Polarization: -4.03 SS G_CDS: -0.08 Total: -4.11 kcal Total: -58.34 3.29 -55.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715895.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.491 kcal (2) G-P(sol) polarization free energy of solvation -58.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds