Wall clock time and date at job start Mon Mar 30 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99465 * 2 1 4 4 H 1.48497 * 109.46978 * 240.00242 * 3 2 1 5 5 H 1.48500 * 109.46951 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47388 * 119.99872 * 3 2 1 7 7 C 1.37868 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00009 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00143 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47085 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21749 * 120.00248 * 359.97438 * 11 10 9 13 13 C 1.46227 * 120.00006 * 179.97438 * 11 10 9 14 14 C 1.36709 * 126.10886 * 179.97438 * 13 11 10 15 15 N 1.30884 * 114.02613 * 180.02562 * 14 13 11 16 16 C 1.30232 * 117.26332 * 0.02562 * 15 14 13 17 17 N 1.37843 * 124.74325 * 180.02562 * 16 15 14 18 18 S 1.70912 * 110.50528 * 359.97438 * 16 15 14 19 19 H 0.96996 * 120.00511 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47534 * 60.00163 * 9 7 2 21 21 H 1.09002 * 109.47424 * 300.00292 * 9 7 2 22 22 H 0.96996 * 120.00368 * 0.02562 * 10 9 7 23 23 H 1.08000 * 122.98618 * 0.27025 * 14 13 11 24 24 H 0.97000 * 120.00213 * 359.96819 * 17 16 15 25 25 H 0.97002 * 119.99675 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6967 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0001 9 6 1.2513 -2.4991 -0.0005 10 7 2.2034 -3.6125 -0.0005 11 6 1.7542 -4.8832 0.0000 12 8 0.5573 -5.1058 0.0009 13 6 2.7046 -5.9946 -0.0006 14 6 2.3887 -7.3247 0.0003 15 7 3.4287 -8.1193 0.0001 16 6 4.6056 -7.5617 -0.0005 17 7 5.8005 -8.2489 -0.0013 18 16 4.4612 -5.8587 -0.0015 19 1 -0.4851 0.8400 0.0004 20 1 0.6243 -2.5567 -0.8903 21 1 0.6249 -2.5571 0.8897 22 1 3.1570 -3.4352 -0.0002 23 1 1.3715 -7.6875 -0.0027 24 1 5.8022 -9.2189 -0.0011 25 1 6.6397 -7.7624 -0.0021 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720240439.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:54 Heat of formation + Delta-G solvation = 2.681146 kcal Electronic energy + Delta-G solvation = -12760.857224 eV Core-core repulsion = 10286.950619 eV Total energy + Delta-G solvation = -2473.906605 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.73333 -38.39409 -34.85786 -34.17765 -32.34052 -29.52985 -27.14855 -24.92192 -22.98649 -21.06480 -19.77334 -18.92731 -17.44856 -16.25120 -16.04635 -15.29705 -15.03755 -14.90311 -14.34502 -14.02643 -13.71240 -12.88252 -11.98586 -11.89303 -11.46111 -10.99127 -10.98765 -10.83803 -10.32315 -9.85799 -9.41685 -9.33200 -9.22041 -8.74069 -8.05839 -7.78185 -6.16131 -4.23351 0.65623 1.01162 1.71525 2.77943 3.21635 3.25902 3.30557 3.32125 3.85419 4.10185 4.38939 4.78346 5.19876 5.48560 5.65877 6.12173 6.60944 6.95879 7.29421 7.37784 7.51578 7.64530 7.85680 7.96483 8.57672 8.75812 9.02952 9.42818 10.94056 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.049319 B = 0.005946 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.600833 B = 4708.295432 C = 5260.753265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.706 5.706 11 C 0.583 3.417 12 O -0.546 6.546 13 C -0.315 4.315 14 C 0.156 3.844 15 N -0.554 5.554 16 C 0.311 3.689 17 N -0.813 5.813 18 S 0.139 5.861 19 H 0.267 0.733 20 H 0.030 0.970 21 H 0.030 0.970 22 H 0.387 0.613 23 H 0.188 0.812 24 H 0.412 0.588 25 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 -12.686 -0.005 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.354 5.354 11 C 0.367 3.633 12 O -0.427 6.427 13 C -0.441 4.441 14 C -0.001 4.001 15 N -0.279 5.279 16 C -0.059 4.059 17 N -0.364 5.364 18 S 0.386 5.614 19 H 0.077 0.923 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.220 0.780 23 H 0.205 0.795 24 H 0.243 0.757 25 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.812 -12.409 -0.007 17.836 hybrid contribution 0.424 0.452 0.003 0.619 sum 13.236 -11.957 -0.004 17.837 Atomic orbital electron populations 1.69961 1.06093 1.27462 1.48691 1.24939 0.94920 0.99416 0.94643 0.86465 0.79422 0.82271 0.78706 1.20041 1.21045 1.20038 1.21174 0.93238 0.90416 1.53515 0.91945 1.19165 0.88188 0.81638 0.98044 1.46400 1.10921 1.05850 1.72203 1.16656 0.86873 0.81974 0.77785 1.90803 1.15138 1.84514 1.52264 1.25699 0.94351 0.99305 1.24760 1.22040 0.98103 0.86662 0.93344 1.66209 0.96504 1.38077 1.27150 1.23808 0.90599 0.94163 0.97347 1.41401 1.02825 1.09866 1.82334 1.83917 1.03727 1.01783 1.71926 0.92344 0.95177 0.95191 0.78020 0.79526 0.75654 0.75373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.10 13.29 55.43 0.74 -25.36 15 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.55 -14.92 9.28 -34.45 -0.32 -15.24 15 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 15 9 C 0.25 6.74 5.43 -5.19 -0.03 6.71 15 10 N -0.71 -15.66 5.54 -62.94 -0.35 -16.01 15 11 C 0.58 12.55 7.77 -13.05 -0.10 12.44 15 12 O -0.55 -13.65 16.87 5.15 0.09 -13.56 15 13 C -0.31 -5.36 6.50 -36.93 -0.24 -5.60 15 14 C 0.16 2.45 11.14 -18.51 -0.21 2.24 15 15 N -0.55 -7.93 10.55 -14.77 -0.16 -8.09 15 16 C 0.31 3.68 8.53 -87.98 -0.75 2.93 15 17 N -0.81 -5.80 9.04 29.69 0.27 -5.53 15 18 S 0.14 1.76 22.33 -107.50 -2.40 -0.64 15 19 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 20 H 0.03 0.89 8.14 -51.93 -0.42 0.46 15 21 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.39 7.54 7.49 -40.82 -0.31 7.23 15 23 H 0.19 2.76 8.06 -52.49 -0.42 2.34 15 24 H 0.41 2.36 8.95 -40.82 -0.37 1.99 15 25 H 0.42 1.79 8.95 -40.82 -0.37 1.43 15 LS Contribution 248.20 15.07 3.74 3.74 Total: -1.00 -33.34 248.20 -6.67 -40.01 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -1.84 Total: 4.44 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.74 Total: 5.18 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.50 Total: -55.00 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.40 Total: -0.64 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.34 -6.67 -40.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720240439.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.694 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds