Wall clock time and date at job start Mon Mar 30 2020 02:44:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86803 * 119.99465 * 2 1
4 4 H 1.48497 * 109.46978 * 240.00242 * 3 2 1
5 5 H 1.48500 * 109.46951 * 359.97438 * 3 2 1
6 6 H 1.48493 * 109.47388 * 119.99872 * 3 2 1
7 7 C 1.37868 * 120.00464 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00009 * 180.02562 * 7 2 1
9 9 C 1.50696 * 120.00143 * 359.97438 * 7 2 1
10 10 N 1.46502 * 109.47085 * 180.02562 * 9 7 2
11 11 C 1.34778 * 119.99854 * 179.97438 * 10 9 7
12 12 O 1.21749 * 120.00248 * 359.97438 * 11 10 9
13 13 C 1.46227 * 120.00006 * 179.97438 * 11 10 9
14 14 C 1.36709 * 126.10886 * 179.97438 * 13 11 10
15 15 N 1.30884 * 114.02613 * 180.02562 * 14 13 11
16 16 C 1.30232 * 117.26332 * 0.02562 * 15 14 13
17 17 N 1.37843 * 124.74325 * 180.02562 * 16 15 14
18 18 S 1.70912 * 110.50528 * 359.97438 * 16 15 14
19 19 H 0.96996 * 120.00511 * 359.97438 * 1 2 3
20 20 H 1.08997 * 109.47534 * 60.00163 * 9 7 2
21 21 H 1.09002 * 109.47424 * 300.00292 * 9 7 2
22 22 H 0.96996 * 120.00368 * 0.02562 * 10 9 7
23 23 H 1.08000 * 122.98618 * 0.27025 * 14 13 11
24 24 H 0.97000 * 120.00213 * 359.96819 * 17 16 15
25 25 H 0.97002 * 119.99675 * 179.97438 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 3.1027 1.6966 -1.2125
5 1 1.2839 2.7465 -0.0006
6 1 3.1027 1.6967 1.2124
7 6 2.0046 -1.1939 -0.0005
8 1 3.0846 -1.1938 -0.0001
9 6 1.2513 -2.4991 -0.0005
10 7 2.2034 -3.6125 -0.0005
11 6 1.7542 -4.8832 0.0000
12 8 0.5573 -5.1058 0.0009
13 6 2.7046 -5.9946 -0.0006
14 6 2.3887 -7.3247 0.0003
15 7 3.4287 -8.1193 0.0001
16 6 4.6056 -7.5617 -0.0005
17 7 5.8005 -8.2489 -0.0013
18 16 4.4612 -5.8587 -0.0015
19 1 -0.4851 0.8400 0.0004
20 1 0.6243 -2.5567 -0.8903
21 1 0.6249 -2.5571 0.8897
22 1 3.1570 -3.4352 -0.0002
23 1 1.3715 -7.6875 -0.0027
24 1 5.8022 -9.2189 -0.0011
25 1 6.6397 -7.7624 -0.0021
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000720240439.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:54
Heat of formation + Delta-G solvation = -24.524723 kcal
Electronic energy + Delta-G solvation = -12762.036959 eV
Core-core repulsion = 10286.950619 eV
Total energy + Delta-G solvation = -2475.086340 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.047 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-40.99939 -39.98392 -36.19344 -35.73882 -34.37853 -30.95129 -29.01834 -26.15676
-24.80593 -22.62214 -21.20996 -20.12205 -18.93700 -17.79570 -17.46388 -16.66493
-16.54486 -16.42199 -15.88937 -15.55110 -15.11001 -14.51615 -14.03567 -13.96378
-12.98060 -12.67849 -12.55646 -12.23562 -11.96459 -11.52089 -11.23490 -10.80053
-10.71861 -10.42024 -9.91386 -8.92279 -8.28435 -6.45789 -0.50851 -0.02969
0.57710 1.44139 1.48654 1.55355 1.56844 2.27733 2.28697 2.38566
2.57718 3.06260 3.77693 4.04223 4.35391 4.98106 5.10462 5.22726
5.42677 5.62794 5.82594 5.85487 6.22039 6.62218 6.78741 6.91827
7.20383 7.36209 8.83651
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.049319 B = 0.005946 C = 0.005321
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 567.600833 B = 4708.295432 C = 5260.753265
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.006 3.994
3 Si 0.986 3.014
4 H -0.261 1.261
5 H -0.285 1.285
6 H -0.261 1.261
7 C -0.560 4.560
8 H 0.083 0.917
9 C 0.267 3.733
10 N -0.704 5.704
11 C 0.584 3.416
12 O -0.595 6.595
13 C -0.368 4.368
14 C 0.177 3.823
15 N -0.575 5.575
16 C 0.326 3.674
17 N -0.780 5.780
18 S 0.189 5.811
19 H 0.270 0.730
20 H -0.007 1.007
21 H -0.007 1.007
22 H 0.402 0.598
23 H 0.186 0.814
24 H 0.424 0.576
25 H 0.433 0.567
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.655 -13.065 -0.006 21.167
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.194 4.194
3 Si 0.809 3.191
4 H -0.186 1.186
5 H -0.210 1.210
6 H -0.186 1.186
7 C -0.598 4.598
8 H 0.101 0.899
9 C 0.144 3.856
10 N -0.353 5.353
11 C 0.372 3.628
12 O -0.479 6.479
13 C -0.495 4.495
14 C 0.017 3.983
15 N -0.301 5.301
16 C -0.045 4.045
17 N -0.333 5.333
18 S 0.437 5.563
19 H 0.079 0.921
20 H 0.011 0.989
21 H 0.010 0.990
22 H 0.237 0.763
23 H 0.203 0.797
24 H 0.258 0.742
25 H 0.268 0.732
Dipole moment (debyes) X Y Z Total
from point charges 16.455 -12.836 -0.008 20.870
hybrid contribution -0.539 0.356 0.003 0.646
sum 15.917 -12.480 -0.005 20.226
Atomic orbital electron populations
1.70129 1.08266 1.28733 1.49641 1.26066 0.95799 1.03876 0.93683
0.85192 0.77934 0.76441 0.79572 1.18567 1.21005 1.18558 1.21559
0.94282 0.90490 1.53440 0.89884 1.18627 0.88530 0.83835 0.94564
1.46092 1.10874 1.05293 1.73000 1.17168 0.87119 0.82502 0.76014
1.90755 1.17616 1.85285 1.54204 1.25100 0.96674 0.97918 1.29780
1.22134 0.98813 0.86418 0.90898 1.66307 0.96848 1.37747 1.29220
1.24086 0.91274 0.94467 0.94715 1.41542 1.02005 1.10758 1.78959
1.83603 0.99403 1.01439 1.71897 0.92144 0.98933 0.98950 0.76297
0.79690 0.74162 0.73224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.40 13.29 21.44 0.28 -56.12 15
2 C 0.01 0.31 5.46 84.65 0.46 0.78 15
3 Si 0.99 42.32 29.54 68.60 2.03 44.34 15
4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15
5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15
6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 15
7 C -0.56 -31.00 9.28 25.60 0.24 -30.76 15
8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 15
9 C 0.27 15.12 5.43 85.63 0.46 15.59 15
10 N -0.70 -32.21 5.54 -471.24 -2.61 -34.82 15
11 C 0.58 26.14 7.77 86.32 0.67 26.81 15
12 O -0.59 -31.54 16.87 -4.50 -0.08 -31.62 15
13 C -0.37 -12.49 6.50 23.99 0.16 -12.34 15
14 C 0.18 5.48 11.14 84.48 0.94 6.43 15
15 N -0.57 -15.20 10.55 -200.64 -2.12 -17.32 15
16 C 0.33 6.62 8.53 179.42 1.53 8.15 15
17 N -0.78 -7.66 9.04 -59.97 -0.54 -8.20 15
18 S 0.19 4.33 22.33 -56.49 -1.26 3.07 15
19 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15
20 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 15
21 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 15
22 H 0.40 15.62 7.49 -92.71 -0.69 14.93 15
23 H 0.19 5.58 8.06 -2.91 -0.02 5.56 15
24 H 0.42 2.91 8.95 -92.71 -0.83 2.08 15
25 H 0.43 1.57 8.95 -92.71 -0.83 0.74 15
Total: -1.00 -75.26 248.20 -0.92 -76.19
By element:
Atomic # 1 Polarization: 10.90 SS G_CDS: -1.09 Total: 9.82 kcal
Atomic # 6 Polarization: 10.20 SS G_CDS: 4.46 Total: 14.66 kcal
Atomic # 7 Polarization: -111.47 SS G_CDS: -4.99 Total: -116.45 kcal
Atomic # 8 Polarization: -31.54 SS G_CDS: -0.08 Total: -31.62 kcal
Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal
Atomic # 16 Polarization: 4.33 SS G_CDS: -1.26 Total: 3.07 kcal
Total: -75.26 -0.92 -76.19 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000720240439.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.662 kcal
(2) G-P(sol) polarization free energy of solvation -75.264 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.602 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.186 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.525 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds