Wall clock time and date at job start Mon Mar 30 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99465 * 2 1 4 4 H 1.48497 * 109.46978 * 240.00242 * 3 2 1 5 5 H 1.48500 * 109.46951 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47388 * 119.99872 * 3 2 1 7 7 C 1.37868 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00009 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00143 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47085 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21749 * 120.00248 * 359.97438 * 11 10 9 13 13 C 1.46227 * 120.00006 * 179.97438 * 11 10 9 14 14 C 1.36709 * 126.10886 * 179.97438 * 13 11 10 15 15 N 1.30884 * 114.02613 * 180.02562 * 14 13 11 16 16 C 1.30232 * 117.26332 * 0.02562 * 15 14 13 17 17 N 1.37843 * 124.74325 * 180.02562 * 16 15 14 18 18 S 1.70912 * 110.50528 * 359.97438 * 16 15 14 19 19 H 0.96996 * 120.00511 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47534 * 60.00163 * 9 7 2 21 21 H 1.09002 * 109.47424 * 300.00292 * 9 7 2 22 22 H 0.96996 * 120.00368 * 0.02562 * 10 9 7 23 23 H 1.08000 * 122.98618 * 0.27025 * 14 13 11 24 24 H 0.97000 * 120.00213 * 359.96819 * 17 16 15 25 25 H 0.97002 * 119.99675 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6967 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0001 9 6 1.2513 -2.4991 -0.0005 10 7 2.2034 -3.6125 -0.0005 11 6 1.7542 -4.8832 0.0000 12 8 0.5573 -5.1058 0.0009 13 6 2.7046 -5.9946 -0.0006 14 6 2.3887 -7.3247 0.0003 15 7 3.4287 -8.1193 0.0001 16 6 4.6056 -7.5617 -0.0005 17 7 5.8005 -8.2489 -0.0013 18 16 4.4612 -5.8587 -0.0015 19 1 -0.4851 0.8400 0.0004 20 1 0.6243 -2.5567 -0.8903 21 1 0.6249 -2.5571 0.8897 22 1 3.1570 -3.4352 -0.0002 23 1 1.3715 -7.6875 -0.0027 24 1 5.8022 -9.2189 -0.0011 25 1 6.6397 -7.7624 -0.0021 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720240439.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:54 Heat of formation + Delta-G solvation = -24.524723 kcal Electronic energy + Delta-G solvation = -12762.036959 eV Core-core repulsion = 10286.950619 eV Total energy + Delta-G solvation = -2475.086340 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.99939 -39.98392 -36.19344 -35.73882 -34.37853 -30.95129 -29.01834 -26.15676 -24.80593 -22.62214 -21.20996 -20.12205 -18.93700 -17.79570 -17.46388 -16.66493 -16.54486 -16.42199 -15.88937 -15.55110 -15.11001 -14.51615 -14.03567 -13.96378 -12.98060 -12.67849 -12.55646 -12.23562 -11.96459 -11.52089 -11.23490 -10.80053 -10.71861 -10.42024 -9.91386 -8.92279 -8.28435 -6.45789 -0.50851 -0.02969 0.57710 1.44139 1.48654 1.55355 1.56844 2.27733 2.28697 2.38566 2.57718 3.06260 3.77693 4.04223 4.35391 4.98106 5.10462 5.22726 5.42677 5.62794 5.82594 5.85487 6.22039 6.62218 6.78741 6.91827 7.20383 7.36209 8.83651 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.049319 B = 0.005946 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.600833 B = 4708.295432 C = 5260.753265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.267 3.733 10 N -0.704 5.704 11 C 0.584 3.416 12 O -0.595 6.595 13 C -0.368 4.368 14 C 0.177 3.823 15 N -0.575 5.575 16 C 0.326 3.674 17 N -0.780 5.780 18 S 0.189 5.811 19 H 0.270 0.730 20 H -0.007 1.007 21 H -0.007 1.007 22 H 0.402 0.598 23 H 0.186 0.814 24 H 0.424 0.576 25 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.655 -13.065 -0.006 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.598 4.598 8 H 0.101 0.899 9 C 0.144 3.856 10 N -0.353 5.353 11 C 0.372 3.628 12 O -0.479 6.479 13 C -0.495 4.495 14 C 0.017 3.983 15 N -0.301 5.301 16 C -0.045 4.045 17 N -0.333 5.333 18 S 0.437 5.563 19 H 0.079 0.921 20 H 0.011 0.989 21 H 0.010 0.990 22 H 0.237 0.763 23 H 0.203 0.797 24 H 0.258 0.742 25 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 16.455 -12.836 -0.008 20.870 hybrid contribution -0.539 0.356 0.003 0.646 sum 15.917 -12.480 -0.005 20.226 Atomic orbital electron populations 1.70129 1.08266 1.28733 1.49641 1.26066 0.95799 1.03876 0.93683 0.85192 0.77934 0.76441 0.79572 1.18567 1.21005 1.18558 1.21559 0.94282 0.90490 1.53440 0.89884 1.18627 0.88530 0.83835 0.94564 1.46092 1.10874 1.05293 1.73000 1.17168 0.87119 0.82502 0.76014 1.90755 1.17616 1.85285 1.54204 1.25100 0.96674 0.97918 1.29780 1.22134 0.98813 0.86418 0.90898 1.66307 0.96848 1.37747 1.29220 1.24086 0.91274 0.94467 0.94715 1.41542 1.02005 1.10758 1.78959 1.83603 0.99403 1.01439 1.71897 0.92144 0.98933 0.98950 0.76297 0.79690 0.74162 0.73224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.44 0.28 -56.12 15 2 C 0.01 0.31 5.46 84.65 0.46 0.78 15 3 Si 0.99 42.32 29.54 68.60 2.03 44.34 15 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 15 7 C -0.56 -31.00 9.28 25.60 0.24 -30.76 15 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 15 9 C 0.27 15.12 5.43 85.63 0.46 15.59 15 10 N -0.70 -32.21 5.54 -471.24 -2.61 -34.82 15 11 C 0.58 26.14 7.77 86.32 0.67 26.81 15 12 O -0.59 -31.54 16.87 -4.50 -0.08 -31.62 15 13 C -0.37 -12.49 6.50 23.99 0.16 -12.34 15 14 C 0.18 5.48 11.14 84.48 0.94 6.43 15 15 N -0.57 -15.20 10.55 -200.64 -2.12 -17.32 15 16 C 0.33 6.62 8.53 179.42 1.53 8.15 15 17 N -0.78 -7.66 9.04 -59.97 -0.54 -8.20 15 18 S 0.19 4.33 22.33 -56.49 -1.26 3.07 15 19 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 20 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 15 21 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 15 22 H 0.40 15.62 7.49 -92.71 -0.69 14.93 15 23 H 0.19 5.58 8.06 -2.91 -0.02 5.56 15 24 H 0.42 2.91 8.95 -92.71 -0.83 2.08 15 25 H 0.43 1.57 8.95 -92.71 -0.83 0.74 15 Total: -1.00 -75.26 248.20 -0.92 -76.19 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -1.09 Total: 9.82 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 4.46 Total: 14.66 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -4.99 Total: -116.45 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.08 Total: -31.62 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.26 Total: 3.07 kcal Total: -75.26 -0.92 -76.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720240439.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.662 kcal (2) G-P(sol) polarization free energy of solvation -75.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds