Wall clock time and date at job start Mon Mar 30 2020 02:44:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86798 * 119.99773 * 2 1
4 4 H 1.48500 * 109.47356 * 269.99866 * 3 2 1
5 5 H 1.48497 * 109.47342 * 30.00467 * 3 2 1
6 6 H 1.48505 * 109.46847 * 150.00121 * 3 2 1
7 7 C 1.38803 * 120.00053 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99773 * 359.97438 * 7 2 1
9 9 S 1.76198 * 119.99710 * 180.02562 * 7 2 1
10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2
11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7
12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9
13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9
14 14 N 1.40105 * 119.99775 * 180.27576 * 13 11 10
15 15 C 1.34940 * 126.03945 * 359.44006 * 14 13 11
16 16 C 1.35317 * 107.74965 * 179.84031 * 15 14 13
17 17 C 1.39870 * 107.91444 * 0.42239 * 16 15 14
18 18 N 1.30838 * 108.20372 * 359.73508 * 17 16 15
19 19 H 0.97000 * 120.00636 * 359.97438 * 1 2 3
20 20 H 1.08998 * 109.47444 * 59.99749 * 10 9 7
21 21 H 1.09002 * 109.47411 * 300.00028 * 10 9 7
22 22 H 0.97001 * 119.99727 * 359.97438 * 13 11 10
23 23 H 1.08011 * 126.12693 * 359.97438 * 15 14 13
24 24 H 1.07995 * 126.04083 * 180.15951 * 16 15 14
25 25 H 1.07998 * 125.90151 * 179.70902 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0465 -1.4000
5 1 1.4477 2.6526 0.7001
6 1 3.5478 1.4402 0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 1.4703 -2.1374 -0.0005
9 16 3.7723 -1.2020 0.0001
10 6 4.0866 -2.9845 -0.0001
11 6 5.5731 -3.2325 -0.0002
12 8 6.3440 -2.2962 -0.0006
13 7 6.0457 -4.4947 -0.0010
14 7 7.4277 -4.7251 0.0048
15 6 8.3903 -3.7795 0.0006
16 6 9.5877 -4.4097 0.0123
17 6 9.3486 -5.7878 0.0142
18 7 8.0541 -5.9781 0.0098
19 1 -0.4851 0.8400 0.0004
20 1 3.6440 -3.4314 -0.8903
21 1 3.6433 -3.4318 0.8896
22 1 5.4291 -5.2434 -0.0011
23 1 8.2332 -2.7109 -0.0081
24 1 10.5567 -3.9329 0.0150
25 1 10.1022 -6.5613 0.0183
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000862764967.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:52
Heat of formation + Delta-G solvation = 86.292946 kcal
Electronic energy + Delta-G solvation = -12771.123458 eV
Core-core repulsion = 10300.842533 eV
Total energy + Delta-G solvation = -2470.280925 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.047 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-41.41651 -39.33690 -34.96060 -32.56069 -31.14951 -30.09002 -28.36210 -25.74530
-22.62110 -21.68781 -20.31589 -18.34648 -17.83665 -16.64580 -16.00197 -15.34542
-15.07473 -14.59970 -14.27804 -13.97450 -13.48001 -12.91300 -12.79370 -12.58295
-11.40939 -11.11272 -11.04736 -10.99223 -10.82394 -10.04468 -9.88890 -9.29499
-9.12077 -8.70819 -8.37066 -7.09843 -6.40149 -4.15198 1.03748 1.75773
2.50281 2.69358 2.73768 3.24215 3.38025 3.40184 3.88414 4.21105
4.34725 4.69858 4.89024 4.98607 5.17781 5.44728 5.53672 5.67461
5.75213 5.94342 6.43009 6.78987 7.06372 7.59257 7.82315 8.01715
8.30251 9.04690 10.68785
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.078135 B = 0.005623 C = 0.005260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 358.267204 B = 4978.443381 C = 5321.557851
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.876 5.876
2 C 0.098 3.902
3 Si 0.856 3.144
4 H -0.266 1.266
5 H -0.272 1.272
6 H -0.235 1.235
7 C -0.527 4.527
8 H 0.091 0.909
9 S -0.127 6.127
10 C -0.112 4.112
11 C 0.536 3.464
12 O -0.501 6.501
13 N -0.502 5.502
14 N -0.179 5.179
15 C 0.079 3.921
16 C -0.285 4.285
17 C 0.049 3.951
18 N -0.303 5.303
19 H 0.273 0.727
20 H 0.109 0.891
21 H 0.110 0.890
22 H 0.435 0.565
23 H 0.200 0.800
24 H 0.156 0.844
25 H 0.193 0.807
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.925 -8.660 0.086 16.399
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.511 5.511
2 C -0.112 4.112
3 Si 0.681 3.319
4 H -0.191 1.191
5 H -0.197 1.197
6 H -0.159 1.159
7 C -0.674 4.674
8 H 0.109 0.891
9 S 0.099 5.901
10 C -0.264 4.264
11 C 0.323 3.677
12 O -0.372 6.372
13 N -0.253 5.253
14 N -0.043 5.043
15 C -0.069 4.069
16 C -0.316 4.316
17 C -0.136 4.136
18 N -0.128 5.128
19 H 0.083 0.917
20 H 0.127 0.873
21 H 0.128 0.872
22 H 0.277 0.723
23 H 0.217 0.783
24 H 0.174 0.826
25 H 0.209 0.791
Dipole moment (debyes) X Y Z Total
from point charges 13.906 -7.834 0.086 15.962
hybrid contribution -0.459 -0.174 -0.031 0.491
sum 13.448 -8.008 0.055 15.652
Atomic orbital electron populations
1.69923 1.05896 1.27975 1.47349 1.24698 0.94470 0.98989 0.93024
0.86751 0.81842 0.83315 0.80027 1.19084 1.19733 1.15932 1.22269
0.87781 0.97763 1.59608 0.89060 1.84880 1.09899 0.97824 1.97508
1.23233 0.90030 1.06045 1.07096 1.20987 0.91570 0.79988 0.75168
1.90645 1.57462 1.41714 1.47391 1.45324 0.91749 1.10200 1.78058
1.47520 0.95446 1.05351 1.56005 1.23462 0.86271 0.97373 0.99823
1.21491 0.98292 0.93330 1.18494 1.23875 0.92720 0.97269 0.99776
1.77451 1.08179 0.99360 1.27775 0.91740 0.87263 0.87218 0.72270
0.78313 0.82600 0.79075
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.50 13.97 55.49 0.78 -24.73 15
2 C 0.10 2.74 5.50 -17.43 -0.10 2.64 15
3 Si 0.86 20.80 27.74 -169.99 -4.72 16.08 15
4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15
5 H -0.27 -6.41 7.11 56.52 0.40 -6.00 15
6 H -0.24 -5.66 6.74 56.52 0.38 -5.28 15
7 C -0.53 -14.35 10.04 30.94 0.31 -14.04 15
8 H 0.09 2.58 8.03 -52.49 -0.42 2.16 15
9 S -0.13 -2.97 18.55 -107.50 -1.99 -4.96 15
10 C -0.11 -1.92 6.16 36.01 0.22 -1.70 15
11 C 0.54 8.79 7.92 -10.98 -0.09 8.71 15
12 O -0.50 -9.61 12.99 5.55 0.07 -9.54 15
13 N -0.50 -6.97 6.67 31.22 0.21 -6.77 15
14 N -0.18 -2.68 4.87 30.45 0.15 -2.53 15
15 C 0.08 1.14 10.42 -17.23 -0.18 0.96 15
16 C -0.29 -3.34 10.80 -40.01 -0.43 -3.78 15
17 C 0.05 0.55 12.03 -17.36 -0.21 0.34 15
18 N -0.30 -4.27 12.70 30.62 0.39 -3.88 15
19 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15
20 H 0.11 1.69 8.14 -51.92 -0.42 1.27 15
21 H 0.11 1.70 8.14 -51.91 -0.42 1.27 15
22 H 0.43 4.65 8.83 -182.59 -1.61 3.04 15
23 H 0.20 2.99 5.80 -52.48 -0.30 2.69 15
24 H 0.16 1.38 8.06 -52.49 -0.42 0.95 15
25 H 0.19 1.37 8.06 -52.49 -0.42 0.95 15
LS Contribution 244.67 15.07 3.69 3.69
Total: -1.00 -32.34 244.67 -5.08 -37.42
By element:
Atomic # 1 Polarization: 5.27 SS G_CDS: -3.18 Total: 2.09 kcal
Atomic # 6 Polarization: -6.39 SS G_CDS: -0.47 Total: -6.86 kcal
Atomic # 7 Polarization: -39.43 SS G_CDS: 1.52 Total: -37.91 kcal
Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal
Atomic # 14 Polarization: 20.80 SS G_CDS: -4.72 Total: 16.08 kcal
Atomic # 16 Polarization: -2.97 SS G_CDS: -1.99 Total: -4.96 kcal
Total LS contribution 3.69 Total: 3.69 kcal
Total: -32.34 -5.08 -37.42 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000862764967.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.716 kcal
(2) G-P(sol) polarization free energy of solvation -32.339 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.378 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.293 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds