Wall clock time and date at job start Mon Mar 30 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99773 * 2 1 4 4 H 1.48500 * 109.47356 * 269.99866 * 3 2 1 5 5 H 1.48497 * 109.47342 * 30.00467 * 3 2 1 6 6 H 1.48505 * 109.46847 * 150.00121 * 3 2 1 7 7 C 1.38803 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99773 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 N 1.40105 * 119.99775 * 180.27576 * 13 11 10 15 15 C 1.34940 * 126.03945 * 359.44006 * 14 13 11 16 16 C 1.35317 * 107.74965 * 179.84031 * 15 14 13 17 17 C 1.39870 * 107.91444 * 0.42239 * 16 15 14 18 18 N 1.30838 * 108.20372 * 359.73508 * 17 16 15 19 19 H 0.97000 * 120.00636 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 21 21 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 22 22 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 23 23 H 1.08011 * 126.12693 * 359.97438 * 15 14 13 24 24 H 1.07995 * 126.04083 * 180.15951 * 16 15 14 25 25 H 1.07998 * 125.90151 * 179.70902 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5731 -3.2325 -0.0002 12 8 6.3440 -2.2962 -0.0006 13 7 6.0457 -4.4947 -0.0010 14 7 7.4277 -4.7251 0.0048 15 6 8.3903 -3.7795 0.0006 16 6 9.5877 -4.4097 0.0123 17 6 9.3486 -5.7878 0.0142 18 7 8.0541 -5.9781 0.0098 19 1 -0.4851 0.8400 0.0004 20 1 3.6440 -3.4314 -0.8903 21 1 3.6433 -3.4318 0.8896 22 1 5.4291 -5.2434 -0.0011 23 1 8.2332 -2.7109 -0.0081 24 1 10.5567 -3.9329 0.0150 25 1 10.1022 -6.5613 0.0183 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862764967.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:52 Heat of formation + Delta-G solvation = 86.292946 kcal Electronic energy + Delta-G solvation = -12771.123458 eV Core-core repulsion = 10300.842533 eV Total energy + Delta-G solvation = -2470.280925 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.41651 -39.33690 -34.96060 -32.56069 -31.14951 -30.09002 -28.36210 -25.74530 -22.62110 -21.68781 -20.31589 -18.34648 -17.83665 -16.64580 -16.00197 -15.34542 -15.07473 -14.59970 -14.27804 -13.97450 -13.48001 -12.91300 -12.79370 -12.58295 -11.40939 -11.11272 -11.04736 -10.99223 -10.82394 -10.04468 -9.88890 -9.29499 -9.12077 -8.70819 -8.37066 -7.09843 -6.40149 -4.15198 1.03748 1.75773 2.50281 2.69358 2.73768 3.24215 3.38025 3.40184 3.88414 4.21105 4.34725 4.69858 4.89024 4.98607 5.17781 5.44728 5.53672 5.67461 5.75213 5.94342 6.43009 6.78987 7.06372 7.59257 7.82315 8.01715 8.30251 9.04690 10.68785 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.078135 B = 0.005623 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.267204 B = 4978.443381 C = 5321.557851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.098 3.902 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.235 1.235 7 C -0.527 4.527 8 H 0.091 0.909 9 S -0.127 6.127 10 C -0.112 4.112 11 C 0.536 3.464 12 O -0.501 6.501 13 N -0.502 5.502 14 N -0.179 5.179 15 C 0.079 3.921 16 C -0.285 4.285 17 C 0.049 3.951 18 N -0.303 5.303 19 H 0.273 0.727 20 H 0.109 0.891 21 H 0.110 0.890 22 H 0.435 0.565 23 H 0.200 0.800 24 H 0.156 0.844 25 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.925 -8.660 0.086 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.159 1.159 7 C -0.674 4.674 8 H 0.109 0.891 9 S 0.099 5.901 10 C -0.264 4.264 11 C 0.323 3.677 12 O -0.372 6.372 13 N -0.253 5.253 14 N -0.043 5.043 15 C -0.069 4.069 16 C -0.316 4.316 17 C -0.136 4.136 18 N -0.128 5.128 19 H 0.083 0.917 20 H 0.127 0.873 21 H 0.128 0.872 22 H 0.277 0.723 23 H 0.217 0.783 24 H 0.174 0.826 25 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 13.906 -7.834 0.086 15.962 hybrid contribution -0.459 -0.174 -0.031 0.491 sum 13.448 -8.008 0.055 15.652 Atomic orbital electron populations 1.69923 1.05896 1.27975 1.47349 1.24698 0.94470 0.98989 0.93024 0.86751 0.81842 0.83315 0.80027 1.19084 1.19733 1.15932 1.22269 0.87781 0.97763 1.59608 0.89060 1.84880 1.09899 0.97824 1.97508 1.23233 0.90030 1.06045 1.07096 1.20987 0.91570 0.79988 0.75168 1.90645 1.57462 1.41714 1.47391 1.45324 0.91749 1.10200 1.78058 1.47520 0.95446 1.05351 1.56005 1.23462 0.86271 0.97373 0.99823 1.21491 0.98292 0.93330 1.18494 1.23875 0.92720 0.97269 0.99776 1.77451 1.08179 0.99360 1.27775 0.91740 0.87263 0.87218 0.72270 0.78313 0.82600 0.79075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.97 55.49 0.78 -24.73 15 2 C 0.10 2.74 5.50 -17.43 -0.10 2.64 15 3 Si 0.86 20.80 27.74 -169.99 -4.72 16.08 15 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.27 -6.41 7.11 56.52 0.40 -6.00 15 6 H -0.24 -5.66 6.74 56.52 0.38 -5.28 15 7 C -0.53 -14.35 10.04 30.94 0.31 -14.04 15 8 H 0.09 2.58 8.03 -52.49 -0.42 2.16 15 9 S -0.13 -2.97 18.55 -107.50 -1.99 -4.96 15 10 C -0.11 -1.92 6.16 36.01 0.22 -1.70 15 11 C 0.54 8.79 7.92 -10.98 -0.09 8.71 15 12 O -0.50 -9.61 12.99 5.55 0.07 -9.54 15 13 N -0.50 -6.97 6.67 31.22 0.21 -6.77 15 14 N -0.18 -2.68 4.87 30.45 0.15 -2.53 15 15 C 0.08 1.14 10.42 -17.23 -0.18 0.96 15 16 C -0.29 -3.34 10.80 -40.01 -0.43 -3.78 15 17 C 0.05 0.55 12.03 -17.36 -0.21 0.34 15 18 N -0.30 -4.27 12.70 30.62 0.39 -3.88 15 19 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 20 H 0.11 1.69 8.14 -51.92 -0.42 1.27 15 21 H 0.11 1.70 8.14 -51.91 -0.42 1.27 15 22 H 0.43 4.65 8.83 -182.59 -1.61 3.04 15 23 H 0.20 2.99 5.80 -52.48 -0.30 2.69 15 24 H 0.16 1.38 8.06 -52.49 -0.42 0.95 15 25 H 0.19 1.37 8.06 -52.49 -0.42 0.95 15 LS Contribution 244.67 15.07 3.69 3.69 Total: -1.00 -32.34 244.67 -5.08 -37.42 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.18 Total: 2.09 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -0.47 Total: -6.86 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 1.52 Total: -37.91 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.72 Total: 16.08 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -1.99 Total: -4.96 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.34 -5.08 -37.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862764967.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.716 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds