Wall clock time and date at job start Mon Mar 30 2020 02:57:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.46506 * 119.99699 * 2 1
4 4 C 1.50700 * 109.47427 * 89.99652 * 3 2 1
5 5 H 1.08005 * 119.99782 * 0.02562 * 4 3 2
6 6 C 1.37872 * 120.00142 * 179.97438 * 4 3 2
7 7 N 1.31511 * 120.00286 * 180.02562 * 6 4 3
8 8 Si 1.86806 * 119.99822 * 0.02562 * 6 4 3
9 9 H 1.48496 * 109.46937 * 89.99904 * 8 6 4
10 10 H 1.48505 * 109.46879 * 209.99952 * 8 6 4
11 11 H 1.48497 * 109.47235 * 329.99853 * 8 6 4
12 12 C 1.34773 * 120.00119 * 179.97438 * 2 1 3
13 13 O 1.33261 * 119.99611 * 185.56049 * 12 2 1
14 14 C 1.35742 * 120.00095 * 5.55568 * 12 2 1
15 15 C 1.35256 * 129.69488 * 6.52490 * 14 12 2
16 16 N 1.30091 * 131.39895 * 179.97438 * 15 14 12
17 17 S 1.57289 * 99.56864 * 359.97438 * 16 15 14
18 18 N 1.39898 * 129.69021 * 186.19161 * 14 12 2
19 19 H 1.08998 * 109.46965 * 95.37836 * 1 2 3
20 20 H 1.09005 * 109.47007 * 215.37605 * 1 2 3
21 21 H 1.08994 * 109.47167 * 335.37360 * 1 2 3
22 22 H 1.09007 * 109.46832 * 210.00078 * 3 2 1
23 23 H 1.09003 * 109.46748 * 329.99781 * 3 2 1
24 24 H 0.97001 * 120.00322 * 180.02562 * 7 6 4
25 25 H 0.96998 * 125.77694 * 0.03496 * 18 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4486 1.7040 1.4208
5 1 2.0980 1.0960 2.2417
6 6 3.1267 2.8777 1.6727
7 7 3.3463 3.2572 2.9125
8 14 3.7337 3.9289 0.2527
9 1 2.6822 4.9077 -0.1232
10 1 4.9619 4.6552 0.6643
11 1 4.0395 3.0593 -0.9115
12 6 2.1389 -1.1672 0.0005
13 8 3.4668 -1.1697 0.1124
14 6 1.4650 -2.3400 -0.1128
15 6 0.1527 -2.5626 -0.3529
16 7 -0.5256 -3.6667 -0.4680
17 16 0.6314 -4.7088 -0.2459
18 7 1.9364 -3.6539 -0.0197
19 1 -0.3633 -0.0963 -1.0231
20 1 -0.3633 -0.8380 0.5950
21 1 -0.3633 0.9341 0.4282
22 1 3.1499 1.1385 -0.5139
23 1 1.6083 2.0284 -0.5139
24 1 3.8231 4.0831 3.0898
25 1 2.8552 -3.9162 0.1473
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000885806724.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:57:59
Heat of formation + Delta-G solvation = 106.821052 kcal
Electronic energy + Delta-G solvation = -13337.848585 eV
Core-core repulsion = 10868.457825 eV
Total energy + Delta-G solvation = -2469.390760 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.047 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.19465 -37.48994 -34.30879 -33.12007 -32.54658 -29.59097 -27.29774 -25.77293
-22.90566 -21.28993 -19.92334 -18.86002 -16.99578 -16.84249 -16.11962 -15.61502
-14.98774 -14.28158 -13.51639 -13.12007 -12.39010 -12.34769 -12.25943 -11.90861
-11.74864 -11.42104 -11.01968 -10.90436 -10.54345 -10.10834 -9.57767 -9.27553
-8.82134 -8.60657 -7.79784 -7.42642 -6.09970 -4.09922 -0.70359 0.12082
2.20272 2.32442 3.27960 3.34437 3.39705 3.42938 3.59566 4.17987
4.38855 4.48850 5.06184 5.23876 6.00506 6.01149 6.29738 6.54006
6.67332 6.86232 6.97370 7.17407 7.53029 7.90836 8.25005 8.49842
8.92744 9.47919 11.03098
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.058348 B = 0.006759 C = 0.006572
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 479.765172 B = 4141.377711 C = 4259.504347
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.499 5.499
3 C 0.207 3.793
4 C -0.529 4.529
5 H 0.078 0.922
6 C 0.075 3.925
7 N -0.895 5.895
8 Si 0.874 3.126
9 H -0.273 1.273
10 H -0.284 1.284
11 H -0.263 1.263
12 C 0.514 3.486
13 O -0.592 6.592
14 C 0.243 3.757
15 C -0.248 4.248
16 N -0.322 5.322
17 S 0.412 5.588
18 N -0.611 5.611
19 H 0.071 0.929
20 H 0.098 0.902
21 H 0.074 0.926
22 H 0.050 0.950
23 H 0.040 0.960
24 H 0.266 0.734
25 H 0.439 0.561
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.746 -12.545 -7.348 15.633
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.221 5.221
3 C 0.086 3.914
4 C -0.567 4.567
5 H 0.096 0.904
6 C -0.128 4.128
7 N -0.533 5.533
8 Si 0.701 3.299
9 H -0.199 1.199
10 H -0.209 1.209
11 H -0.187 1.187
12 C 0.303 3.697
13 O -0.485 6.485
14 C 0.087 3.913
15 C -0.462 4.462
16 N -0.146 5.146
17 S 0.484 5.516
18 N -0.335 5.335
19 H 0.089 0.911
20 H 0.116 0.884
21 H 0.093 0.907
22 H 0.068 0.932
23 H 0.058 0.942
24 H 0.076 0.924
25 H 0.283 0.717
Dipole moment (debyes) X Y Z Total
from point charges -6.100 -14.517 -7.353 17.379
hybrid contribution 1.959 1.102 -0.224 2.259
sum -4.141 -13.415 -7.577 15.954
Atomic orbital electron populations
1.22401 0.77121 1.03811 1.03362 1.47461 1.08298 1.05814 1.60556
1.20062 0.92988 0.79005 0.99320 1.21197 1.37503 1.07391 0.90630
0.90424 1.24817 0.95058 0.97265 0.95652 1.69881 1.41217 1.23488
1.18698 0.86871 0.79006 0.80877 0.83181 1.19862 1.20935 1.18704
1.16814 0.89015 0.82440 0.81446 1.93611 1.06496 1.91188 1.57203
1.19232 0.88395 0.86076 0.97566 1.37427 1.05216 1.17894 0.85677
1.78534 1.21095 1.01189 1.13771 1.83575 0.99166 1.19438 1.49394
1.52322 1.17648 1.12205 1.51365 0.91070 0.88403 0.90749 0.93210
0.94175 0.92444 0.71696
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.20 9.06 59.85 0.54 1.75 15
2 N -0.50 -10.19 2.86 -185.28 -0.53 -10.72 15
3 C 0.21 4.86 4.17 -5.19 -0.02 4.84 15
4 C -0.53 -14.81 9.94 -34.44 -0.34 -15.15 15
5 H 0.08 2.39 8.06 -52.48 -0.42 1.97 15
6 C 0.07 2.13 5.47 -17.82 -0.10 2.04 15
7 N -0.89 -27.12 13.96 55.43 0.77 -26.35 15
8 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 15
9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15
10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15
11 H -0.26 -6.07 6.54 56.52 0.37 -5.70 15
12 C 0.51 10.57 7.51 -17.15 -0.13 10.44 15
13 O -0.59 -14.62 17.53 -12.08 -0.21 -14.84 15
14 C 0.24 4.07 6.75 -86.13 -0.58 3.49 15
15 C -0.25 -3.96 10.73 -19.35 -0.21 -4.17 15
16 N -0.32 -4.72 12.13 44.68 0.54 -4.18 15
17 S 0.41 4.60 23.92 -107.50 -2.57 2.03 15
18 N -0.61 -7.91 6.87 31.17 0.21 -7.70 15
19 H 0.07 0.98 7.95 -51.93 -0.41 0.57 15
20 H 0.10 1.52 5.56 -51.93 -0.29 1.23 15
21 H 0.07 1.15 8.03 -51.93 -0.42 0.74 15
22 H 0.05 1.25 6.53 -51.93 -0.34 0.91 15
23 H 0.04 0.86 7.50 -51.93 -0.39 0.47 15
24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15
25 H 0.44 4.72 8.96 -40.73 -0.37 4.35 15
LS Contribution 240.02 15.07 3.62 3.62
Total: -1.00 -33.74 240.02 -5.47 -39.22
By element:
Atomic # 1 Polarization: 1.30 SS G_CDS: -1.80 Total: -0.51 kcal
Atomic # 6 Polarization: 4.07 SS G_CDS: -0.84 Total: 3.24 kcal
Atomic # 7 Polarization: -49.95 SS G_CDS: 1.00 Total: -48.95 kcal
Atomic # 8 Polarization: -14.62 SS G_CDS: -0.21 Total: -14.84 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal
Atomic # 16 Polarization: 4.60 SS G_CDS: -2.57 Total: 2.03 kcal
Total LS contribution 3.62 Total: 3.62 kcal
Total: -33.74 -5.47 -39.22 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885806724.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.040 kcal
(2) G-P(sol) polarization free energy of solvation -33.745 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.295 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal
(6) G-S(sol) free energy of system = (1) + (5) 106.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds