Wall clock time and date at job start Mon Mar 30 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99699 * 2 1 4 4 C 1.50700 * 109.47427 * 89.99652 * 3 2 1 5 5 H 1.08005 * 119.99782 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00142 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00286 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99822 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.46937 * 89.99904 * 8 6 4 10 10 H 1.48505 * 109.46879 * 209.99952 * 8 6 4 11 11 H 1.48497 * 109.47235 * 329.99853 * 8 6 4 12 12 C 1.34773 * 120.00119 * 179.97438 * 2 1 3 13 13 O 1.33261 * 119.99611 * 185.56049 * 12 2 1 14 14 C 1.35742 * 120.00095 * 5.55568 * 12 2 1 15 15 C 1.35256 * 129.69488 * 6.52490 * 14 12 2 16 16 N 1.30091 * 131.39895 * 179.97438 * 15 14 12 17 17 S 1.57289 * 99.56864 * 359.97438 * 16 15 14 18 18 N 1.39898 * 129.69021 * 186.19161 * 14 12 2 19 19 H 1.08998 * 109.46965 * 95.37836 * 1 2 3 20 20 H 1.09005 * 109.47007 * 215.37605 * 1 2 3 21 21 H 1.08994 * 109.47167 * 335.37360 * 1 2 3 22 22 H 1.09007 * 109.46832 * 210.00078 * 3 2 1 23 23 H 1.09003 * 109.46748 * 329.99781 * 3 2 1 24 24 H 0.97001 * 120.00322 * 180.02562 * 7 6 4 25 25 H 0.96998 * 125.77694 * 0.03496 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7040 1.4208 5 1 2.0980 1.0960 2.2417 6 6 3.1267 2.8777 1.6727 7 7 3.3463 3.2572 2.9125 8 14 3.7337 3.9289 0.2527 9 1 2.6822 4.9077 -0.1232 10 1 4.9619 4.6552 0.6643 11 1 4.0395 3.0593 -0.9115 12 6 2.1389 -1.1672 0.0005 13 8 3.4668 -1.1697 0.1124 14 6 1.4650 -2.3400 -0.1128 15 6 0.1527 -2.5626 -0.3529 16 7 -0.5256 -3.6667 -0.4680 17 16 0.6314 -4.7088 -0.2459 18 7 1.9364 -3.6539 -0.0197 19 1 -0.3633 -0.0963 -1.0231 20 1 -0.3633 -0.8380 0.5950 21 1 -0.3633 0.9341 0.4282 22 1 3.1499 1.1385 -0.5139 23 1 1.6083 2.0284 -0.5139 24 1 3.8231 4.0831 3.0898 25 1 2.8552 -3.9162 0.1473 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885806724.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:59 Heat of formation + Delta-G solvation = 79.819098 kcal Electronic energy + Delta-G solvation = -13339.019478 eV Core-core repulsion = 10868.457825 eV Total energy + Delta-G solvation = -2470.561652 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.43148 -38.95702 -35.79069 -34.71369 -34.39404 -31.31324 -28.79554 -27.26887 -24.62383 -22.74616 -21.05394 -20.14815 -19.10338 -18.17514 -17.51861 -16.90775 -16.62387 -15.99130 -15.08316 -14.81046 -14.26494 -13.68040 -13.54752 -13.28826 -13.25047 -13.00905 -12.58675 -12.33091 -12.20149 -11.94627 -11.70737 -10.96368 -10.75910 -9.99236 -9.44124 -8.50850 -8.28239 -6.34331 -1.90532 -0.92111 0.83501 1.16840 1.40736 1.44510 1.55363 2.03036 2.21476 2.38113 3.01873 3.06284 3.24641 3.87645 4.62624 4.74946 4.88954 4.95832 5.15984 5.37233 5.46700 5.52625 5.93750 6.22022 6.38110 6.66286 6.81802 7.28698 8.88670 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.058348 B = 0.006759 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.765172 B = 4141.377711 C = 4259.504347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.511 5.511 3 C 0.214 3.786 4 C -0.536 4.536 5 H 0.030 0.970 6 C 0.013 3.987 7 N -0.946 5.946 8 Si 0.948 3.052 9 H -0.247 1.247 10 H -0.285 1.285 11 H -0.251 1.251 12 C 0.522 3.478 13 O -0.654 6.654 14 C 0.189 3.811 15 C -0.269 4.269 16 N -0.342 5.342 17 S 0.562 5.438 18 N -0.610 5.610 19 H 0.098 0.902 20 H 0.103 0.897 21 H 0.074 0.926 22 H 0.033 0.967 23 H 0.071 0.929 24 H 0.269 0.731 25 H 0.448 0.552 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -14.142 -9.312 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.231 5.231 3 C 0.092 3.908 4 C -0.574 4.574 5 H 0.048 0.952 6 C -0.185 4.185 7 N -0.586 5.586 8 Si 0.771 3.229 9 H -0.171 1.171 10 H -0.211 1.211 11 H -0.174 1.174 12 C 0.313 3.687 13 O -0.551 6.551 14 C 0.036 3.964 15 C -0.475 4.475 16 N -0.173 5.173 17 S 0.632 5.368 18 N -0.338 5.338 19 H 0.116 0.884 20 H 0.121 0.879 21 H 0.093 0.907 22 H 0.051 0.949 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -7.341 -16.062 -9.324 19.971 hybrid contribution 2.214 1.122 0.456 2.524 sum -5.127 -14.941 -8.868 18.115 Atomic orbital electron populations 1.22606 0.74508 1.04015 1.05163 1.47503 1.09812 1.04953 1.60860 1.19780 0.93415 0.81254 0.96334 1.21416 1.37216 1.06922 0.91876 0.95174 1.25834 0.95094 0.98874 0.98739 1.70046 1.42656 1.24444 1.21439 0.85703 0.78773 0.79090 0.79381 1.17133 1.21118 1.17431 1.17064 0.88179 0.83726 0.79685 1.93556 1.09121 1.91818 1.60646 1.18290 0.88734 0.85896 1.03435 1.37245 1.05551 1.20032 0.84686 1.78226 1.22249 1.01654 1.15188 1.83039 0.96088 1.15542 1.42085 1.52526 1.19029 1.11875 1.50335 0.88366 0.87929 0.90728 0.94896 0.91096 0.92235 0.70689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 9.06 127.77 1.16 3.60 15 2 N -0.51 -21.21 2.86 -852.93 -2.44 -23.65 15 3 C 0.21 10.19 4.17 85.63 0.36 10.54 15 4 C -0.54 -31.19 9.94 25.60 0.25 -30.93 15 5 H 0.03 1.97 8.06 -2.91 -0.02 1.95 15 6 C 0.01 0.73 5.47 84.65 0.46 1.20 15 7 N -0.95 -59.39 13.96 21.44 0.30 -59.09 15 8 Si 0.95 43.23 27.47 68.60 1.88 45.12 15 9 H -0.25 -10.22 7.11 99.48 0.71 -9.52 15 10 H -0.29 -13.00 7.11 99.48 0.71 -12.30 15 11 H -0.25 -10.86 6.54 99.48 0.65 -10.21 15 12 C 0.52 22.09 7.51 83.66 0.63 22.72 15 13 O -0.65 -33.81 17.53 -66.15 -1.16 -34.97 15 14 C 0.19 6.22 6.75 36.59 0.25 6.47 15 15 C -0.27 -8.09 10.73 84.26 0.90 -7.19 15 16 N -0.34 -8.87 12.13 -12.54 -0.15 -9.02 15 17 S 0.56 10.12 23.92 -56.49 -1.35 8.77 15 18 N -0.61 -14.58 6.87 -55.30 -0.38 -14.96 15 19 H 0.10 2.54 7.95 -2.39 -0.02 2.52 15 20 H 0.10 3.15 5.56 -2.38 -0.01 3.14 15 21 H 0.07 2.29 8.03 -2.39 -0.02 2.27 15 22 H 0.03 1.68 6.53 -2.38 -0.02 1.67 15 23 H 0.07 2.93 7.50 -2.39 -0.02 2.92 15 24 H 0.27 15.65 8.31 -92.71 -0.77 14.88 15 25 H 0.45 8.91 8.96 -92.76 -0.83 8.08 15 Total: -1.00 -77.08 240.02 1.07 -76.01 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.35 Total: 5.39 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 4.01 Total: 6.41 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -2.67 Total: -106.72 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.16 Total: -34.97 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.12 kcal Atomic # 16 Polarization: 10.12 SS G_CDS: -1.35 Total: 8.77 kcal Total: -77.08 1.07 -76.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885806724.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.826 kcal (2) G-P(sol) polarization free energy of solvation -77.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds