Wall clock time and date at job start Mon Mar 30 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46739 * 2 1 4 4 C 1.50699 * 109.47411 * 239.99385 * 2 1 3 5 5 H 1.07996 * 120.00340 * 239.99684 * 4 2 1 6 6 C 1.37878 * 119.99951 * 60.00109 * 4 2 1 7 7 N 1.31519 * 119.99602 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00231 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46893 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47345 * 119.99804 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99813 * 8 6 4 12 12 N 1.46505 * 109.47115 * 119.99199 * 2 1 3 13 13 C 1.34778 * 119.99879 * 275.00138 * 12 2 1 14 14 O 1.33251 * 120.00245 * 0.02562 * 13 12 2 15 15 C 1.35743 * 119.99540 * 179.97438 * 13 12 2 16 16 C 1.35264 * 129.69435 * 359.96142 * 15 13 12 17 17 N 1.30089 * 131.39828 * 180.02562 * 16 15 13 18 18 S 1.57296 * 99.56866 * 359.97438 * 17 16 15 19 19 N 1.39901 * 129.68974 * 180.02562 * 15 13 12 20 20 H 1.09005 * 109.46438 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47321 * 300.00230 * 1 2 3 22 22 H 1.09000 * 109.47306 * 60.00971 * 1 2 3 23 23 H 0.97002 * 119.99673 * 180.02562 * 7 6 4 24 24 H 0.97000 * 119.99477 * 95.00115 * 12 2 1 25 25 H 0.97000 * 125.77415 * 0.22496 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9428 0.8294 -2.6034 8 14 2.3215 -1.1207 -4.0078 9 1 3.1466 -2.2873 -3.6035 10 1 1.1663 -1.5871 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 7 2.0184 -0.6905 1.1963 13 6 2.1471 -0.0179 2.3572 14 8 1.8296 1.2748 2.4170 15 6 2.5990 -0.6579 3.4657 16 6 2.9714 -1.9482 3.6269 17 7 3.4071 -2.5942 4.6686 18 16 3.3841 -1.4302 5.7264 19 7 2.8078 -0.1660 4.7586 20 1 -0.3632 -1.0278 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8901 23 1 0.7082 1.1605 -3.4845 24 1 2.2491 -1.6316 1.1528 25 1 2.6465 0.7445 5.0519 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885806837.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:17 Heat of formation + Delta-G solvation = 86.630949 kcal Electronic energy + Delta-G solvation = -13148.752688 eV Core-core repulsion = 10678.486420 eV Total energy + Delta-G solvation = -2470.266268 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02115 -37.33672 -34.40164 -33.36703 -32.21730 -29.85975 -27.15264 -25.27510 -22.74362 -20.80176 -19.85737 -19.31120 -17.88398 -16.38091 -15.71163 -15.55211 -15.08189 -14.12899 -13.41374 -13.08086 -12.48926 -12.34309 -12.06677 -11.69685 -11.20148 -11.07788 -10.89821 -10.71626 -10.30189 -10.23544 -9.37727 -9.09057 -8.85518 -8.58044 -8.05266 -7.60583 -6.14562 -4.24017 -0.70412 0.11763 2.20620 2.33183 3.27008 3.35024 3.38798 3.55266 3.66992 4.20652 4.36856 4.61588 5.18815 5.31563 6.01436 6.75831 6.78641 7.03569 7.05852 7.17697 7.41540 7.65781 7.81738 8.06081 8.31841 8.54611 8.84575 9.42841 10.91589 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.051438 B = 0.006253 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.213419 B = 4477.096048 C = 4844.922020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.253 3.747 3 H 0.061 0.939 4 C -0.536 4.536 5 H 0.070 0.930 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.604 5.604 13 C 0.517 3.483 14 O -0.606 6.606 15 C 0.246 3.754 16 C -0.256 4.256 17 N -0.320 5.320 18 S 0.413 5.587 19 N -0.612 5.612 20 H 0.033 0.967 21 H 0.019 0.981 22 H 0.095 0.905 23 H 0.265 0.735 24 H 0.417 0.583 25 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 -3.077 12.668 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.152 3.848 3 H 0.079 0.921 4 C -0.575 4.575 5 H 0.088 0.912 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.246 5.246 13 C 0.304 3.696 14 O -0.501 6.501 15 C 0.090 3.910 16 C -0.469 4.469 17 N -0.143 5.143 18 S 0.485 5.515 19 N -0.336 5.336 20 H 0.052 0.948 21 H 0.038 0.962 22 H 0.114 0.886 23 H 0.075 0.925 24 H 0.255 0.745 25 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.440 -3.142 14.553 15.280 hybrid contribution -0.108 0.716 -1.193 1.395 sum 3.332 -2.426 13.360 13.981 Atomic orbital electron populations 1.22083 0.97273 0.99779 1.01457 1.19199 0.91833 0.94613 0.79161 0.92089 1.21254 1.32812 1.13607 0.89807 0.91198 1.24875 0.94674 0.94907 0.99134 1.69912 1.35744 1.22450 1.23967 0.86327 0.78624 0.79597 0.82221 1.19401 1.20868 1.20958 1.46317 1.55235 1.14488 1.08572 1.16933 0.81275 0.88654 0.82773 1.93597 1.58103 1.09066 1.89291 1.19321 0.97437 0.88089 0.86199 1.37354 0.84144 1.06040 1.19375 1.78368 1.14432 1.19936 1.01592 1.83564 1.43473 1.01204 1.23269 1.52320 1.47969 1.18575 1.14746 0.94830 0.96232 0.88611 0.92531 0.74515 0.71750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.26 37.16 0.34 -3.16 15 2 C 0.25 6.19 2.56 -69.08 -0.18 6.01 15 3 H 0.06 1.70 7.55 -51.93 -0.39 1.31 15 4 C -0.54 -13.68 8.73 -34.44 -0.30 -13.98 15 5 H 0.07 1.70 7.74 -52.49 -0.41 1.30 15 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 15 7 N -0.88 -24.08 11.32 55.43 0.63 -23.45 15 8 Si 0.91 20.15 29.54 -169.99 -5.02 15.13 15 9 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 12 N -0.60 -12.38 5.04 -56.89 -0.29 -12.67 15 13 C 0.52 10.28 7.59 -17.15 -0.13 10.15 15 14 O -0.61 -14.20 17.56 -12.06 -0.21 -14.41 15 15 C 0.25 4.08 6.91 -86.13 -0.60 3.48 15 16 C -0.26 -4.30 14.26 -19.35 -0.28 -4.58 15 17 N -0.32 -4.94 12.13 44.69 0.54 -4.40 15 18 S 0.41 4.68 23.92 -107.50 -2.57 2.11 15 19 N -0.61 -7.76 6.87 31.17 0.21 -7.55 15 20 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 22 H 0.10 2.48 6.07 -51.93 -0.32 2.16 15 23 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 24 H 0.42 7.65 7.79 -40.82 -0.32 7.34 15 25 H 0.44 4.48 8.96 -40.73 -0.37 4.11 15 LS Contribution 245.02 15.07 3.69 3.69 Total: -1.00 -30.19 245.02 -6.02 -36.21 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -1.78 Total: 5.75 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.23 Total: -0.41 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 1.10 Total: -48.06 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.21 Total: -14.41 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -2.57 Total: 2.11 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.19 -6.02 -36.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885806837.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.840 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds