Wall clock time and date at job start Mon Mar 30 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46739 * 2 1 4 4 C 1.50699 * 109.47411 * 239.99385 * 2 1 3 5 5 H 1.07996 * 120.00340 * 239.99684 * 4 2 1 6 6 C 1.37878 * 119.99951 * 60.00109 * 4 2 1 7 7 N 1.31519 * 119.99602 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00231 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46893 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47345 * 119.99804 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99813 * 8 6 4 12 12 N 1.46505 * 109.47115 * 119.99199 * 2 1 3 13 13 C 1.34778 * 119.99879 * 275.00138 * 12 2 1 14 14 O 1.33251 * 120.00245 * 0.02562 * 13 12 2 15 15 C 1.35743 * 119.99540 * 179.97438 * 13 12 2 16 16 C 1.35264 * 129.69435 * 359.96142 * 15 13 12 17 17 N 1.30089 * 131.39828 * 180.02562 * 16 15 13 18 18 S 1.57296 * 99.56866 * 359.97438 * 17 16 15 19 19 N 1.39901 * 129.68974 * 180.02562 * 15 13 12 20 20 H 1.09005 * 109.46438 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47321 * 300.00230 * 1 2 3 22 22 H 1.09000 * 109.47306 * 60.00971 * 1 2 3 23 23 H 0.97002 * 119.99673 * 180.02562 * 7 6 4 24 24 H 0.97000 * 119.99477 * 95.00115 * 12 2 1 25 25 H 0.97000 * 125.77415 * 0.22496 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9428 0.8294 -2.6034 8 14 2.3215 -1.1207 -4.0078 9 1 3.1466 -2.2873 -3.6035 10 1 1.1663 -1.5871 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 7 2.0184 -0.6905 1.1963 13 6 2.1471 -0.0179 2.3572 14 8 1.8296 1.2748 2.4170 15 6 2.5990 -0.6579 3.4657 16 6 2.9714 -1.9482 3.6269 17 7 3.4071 -2.5942 4.6686 18 16 3.3841 -1.4302 5.7264 19 7 2.8078 -0.1660 4.7586 20 1 -0.3632 -1.0278 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8901 23 1 0.7082 1.1605 -3.4845 24 1 2.2491 -1.6316 1.1528 25 1 2.6465 0.7445 5.0519 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885806837.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:17 Heat of formation + Delta-G solvation = 63.273983 kcal Electronic energy + Delta-G solvation = -13149.765522 eV Core-core repulsion = 10678.486420 eV Total energy + Delta-G solvation = -2471.279102 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.26771 -38.90982 -36.06910 -34.75511 -33.98972 -31.59539 -28.62051 -27.26631 -24.19747 -22.49476 -21.01406 -20.76266 -19.34163 -17.90310 -17.32427 -16.89466 -16.75005 -15.80272 -15.02412 -14.74308 -14.32978 -13.59075 -13.55677 -13.18448 -12.90650 -12.77345 -12.65403 -12.28520 -12.18808 -12.03401 -11.07476 -11.03303 -10.54589 -10.12072 -9.73090 -8.70423 -8.12305 -6.28835 -1.91871 -0.93338 0.80588 1.15031 1.52311 1.54198 1.66602 2.17906 2.23786 2.52946 3.01962 3.19447 3.33226 3.99953 4.80023 4.94647 4.95522 5.09162 5.28079 5.50304 5.69637 5.83677 5.96696 6.09988 6.62584 6.74634 7.08797 7.42805 8.94418 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.051438 B = 0.006253 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.213419 B = 4477.096048 C = 4844.922020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.261 3.739 3 H 0.016 0.984 4 C -0.547 4.547 5 H 0.080 0.920 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.609 5.609 13 C 0.536 3.464 14 O -0.653 6.653 15 C 0.197 3.803 16 C -0.295 4.295 17 N -0.345 5.345 18 S 0.570 5.430 19 N -0.605 5.605 20 H 0.046 0.954 21 H 0.017 0.983 22 H 0.073 0.927 23 H 0.266 0.734 24 H 0.427 0.573 25 H 0.450 0.550 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -4.603 14.580 15.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.158 3.842 3 H 0.034 0.966 4 C -0.585 4.585 5 H 0.098 0.902 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.182 1.182 10 H -0.205 1.205 11 H -0.211 1.211 12 N -0.251 5.251 13 C 0.324 3.676 14 O -0.551 6.551 15 C 0.044 3.956 16 C -0.500 4.500 17 N -0.177 5.177 18 S 0.640 5.360 19 N -0.333 5.333 20 H 0.065 0.935 21 H 0.036 0.964 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.267 0.733 25 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 4.514 -4.676 16.419 17.659 hybrid contribution -0.322 1.163 -1.328 1.794 sum 4.192 -3.514 15.091 16.051 Atomic orbital electron populations 1.21912 0.97149 1.00142 1.00218 1.18774 0.91984 0.92669 0.80740 0.96576 1.21571 1.32799 1.13812 0.90321 0.90201 1.25738 0.94799 0.95530 1.02158 1.70051 1.36900 1.23880 1.24624 0.85276 0.78064 0.78576 0.78324 1.18234 1.20521 1.21148 1.45964 1.56330 1.14811 1.08013 1.17022 0.79525 0.87689 0.83348 1.93557 1.60424 1.11235 1.89900 1.18241 1.02510 0.88304 0.86565 1.37161 0.83619 1.07090 1.22122 1.77957 1.15786 1.21507 1.02408 1.82972 1.36502 0.97658 1.18865 1.52432 1.46824 1.19897 1.14182 0.93499 0.96363 0.90842 0.92500 0.73276 0.70407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 9.26 71.98 0.67 -6.01 15 2 C 0.26 13.27 2.56 44.24 0.11 13.38 15 3 H 0.02 0.97 7.55 -2.39 -0.02 0.95 15 4 C -0.55 -28.32 8.73 25.60 0.22 -28.10 15 5 H 0.08 3.88 7.74 -2.91 -0.02 3.86 15 6 C 0.02 0.95 5.30 84.65 0.45 1.40 15 7 N -0.92 -51.31 11.32 21.45 0.24 -51.07 15 8 Si 0.97 41.41 29.54 68.60 2.03 43.44 15 9 H -0.26 -10.45 7.11 99.48 0.71 -9.75 15 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 11 H -0.29 -12.15 7.11 99.48 0.71 -11.45 15 12 N -0.61 -25.72 5.04 -446.76 -2.25 -27.98 15 13 C 0.54 21.87 7.59 83.66 0.64 22.50 15 14 O -0.65 -31.84 17.56 -66.05 -1.16 -33.00 15 15 C 0.20 6.41 6.91 36.59 0.25 6.66 15 16 C -0.29 -9.50 14.26 84.26 1.20 -8.30 15 17 N -0.35 -9.62 12.13 -12.53 -0.15 -9.77 15 18 S 0.57 10.37 23.92 -56.49 -1.35 9.02 15 19 N -0.61 -13.88 6.87 -55.30 -0.38 -14.26 15 20 H 0.05 2.11 8.14 -2.38 -0.02 2.10 15 21 H 0.02 0.85 8.14 -2.39 -0.02 0.83 15 22 H 0.07 3.95 6.07 -2.39 -0.01 3.94 15 23 H 0.27 14.06 8.31 -92.71 -0.77 13.29 15 24 H 0.43 16.00 7.79 -92.71 -0.72 15.28 15 25 H 0.45 8.10 8.96 -92.76 -0.83 7.27 15 Total: -1.00 -66.97 245.02 0.22 -66.75 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -0.30 Total: 15.34 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 3.54 Total: 1.53 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -2.54 Total: -103.07 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.16 Total: -33.00 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 10.37 SS G_CDS: -1.35 Total: 9.02 kcal Total: -66.97 0.22 -66.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885806837.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.027 kcal (2) G-P(sol) polarization free energy of solvation -66.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds