Wall clock time and date at job start Mon Mar 30 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46750 * 2 1 4 4 C 1.37298 * 119.99858 * 96.38286 * 3 2 1 5 5 H 1.07998 * 119.99485 * 166.04401 * 4 3 2 6 6 C 1.38132 * 120.00111 * 346.03580 * 4 3 2 7 7 N 1.31981 * 120.00097 * 339.06486 * 6 4 3 8 8 Si 1.86805 * 120.00129 * 159.06125 * 6 4 3 9 9 H 1.48499 * 109.46774 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46839 * 119.99954 * 8 6 4 11 11 H 1.48494 * 109.47263 * 240.00427 * 8 6 4 12 12 C 1.34772 * 120.00050 * 276.36877 * 3 2 1 13 13 O 1.33236 * 120.00430 * 186.25350 * 12 3 2 14 14 C 1.36610 * 119.99735 * 6.26582 * 12 3 2 15 15 C 1.36961 * 132.71570 * 4.39644 * 14 12 3 16 16 N 1.29460 * 130.11902 * 180.02562 * 15 14 12 17 17 N 1.29451 * 108.33071 * 359.97438 * 16 15 14 18 18 S 1.69819 * 110.88373 * 359.97438 * 17 16 15 19 19 H 1.09002 * 109.47176 * 300.00036 * 1 2 3 20 20 H 1.09002 * 109.46894 * 60.00010 * 1 2 3 21 21 H 1.08993 * 109.47234 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47433 * 239.99632 * 2 1 3 23 23 H 1.08998 * 109.46652 * 119.99536 * 2 1 3 24 24 H 0.97001 * 120.00059 * 179.97438 * 7 6 4 25 25 H 0.96999 * 124.55629 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3717 1.9844 1.1817 5 1 2.9364 2.9049 1.1703 6 6 2.0047 1.4141 2.3851 7 7 1.0004 0.5591 2.4311 8 14 2.9302 1.8527 3.9473 9 1 4.0049 2.8268 3.6290 10 1 1.9905 2.4556 4.9265 11 1 3.5304 0.6251 4.5284 12 6 2.1208 2.0598 -1.1600 13 8 2.6802 3.2688 -1.1774 14 6 1.6508 1.5079 -2.3179 15 6 0.9748 0.3474 -2.5865 16 7 0.5511 -0.1295 -3.7130 17 7 0.8715 0.7008 -4.6530 18 16 1.6980 2.0424 -4.0198 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 0.7429 0.1583 3.2761 25 1 0.6670 0.5738 -5.5926 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885806910.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:24 Heat of formation + Delta-G solvation = 116.657435 kcal Electronic energy + Delta-G solvation = -13714.128702 eV Core-core repulsion = 11245.164480 eV Total energy + Delta-G solvation = -2468.964222 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.94567 -38.00320 -34.40718 -32.26191 -30.81842 -29.29494 -27.22870 -25.49227 -22.49183 -21.33578 -19.09487 -17.74789 -17.35253 -16.58265 -15.46569 -14.97020 -14.08521 -13.90554 -13.40451 -12.98289 -12.85957 -12.29255 -11.85482 -11.63111 -11.12919 -10.95624 -10.86943 -10.39876 -10.21046 -9.62110 -9.44942 -8.54628 -8.22857 -8.07994 -7.96795 -7.71692 -6.07966 -4.38240 0.04670 1.68110 2.51874 2.59995 2.74519 2.88362 3.25658 3.31219 4.00899 4.39608 4.84549 5.65530 6.01915 6.06062 6.31627 6.54547 6.66406 6.84393 7.04684 7.15143 7.20305 7.42795 7.76428 7.89350 8.01298 8.36255 8.97946 9.35296 9.61263 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.049606 B = 0.008907 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.311231 B = 3142.761286 C = 3621.071022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.098 3.902 3 N -0.290 5.290 4 C -0.104 4.104 5 H 0.152 0.848 6 C 0.001 3.999 7 N -0.709 5.709 8 Si 0.963 3.037 9 H -0.247 1.247 10 H -0.261 1.261 11 H -0.260 1.260 12 C 0.363 3.637 13 O -0.697 6.697 14 C 0.044 3.956 15 C -0.349 4.349 16 N -0.177 5.177 17 N -0.580 5.580 18 S 0.106 5.894 19 H 0.068 0.932 20 H 0.063 0.937 21 H 0.048 0.952 22 H 0.104 0.896 23 H 0.083 0.917 24 H 0.305 0.695 25 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 -2.409 4.825 5.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.023 4.023 3 N 0.011 4.989 4 C -0.258 4.258 5 H 0.170 0.830 6 C -0.221 4.221 7 N -0.340 5.340 8 Si 0.782 3.218 9 H -0.170 1.170 10 H -0.186 1.186 11 H -0.184 1.184 12 C 0.172 3.828 13 O -0.607 6.607 14 C -0.088 4.088 15 C -0.556 4.556 16 N 0.003 4.997 17 N -0.400 5.400 18 S 0.257 5.743 19 H 0.087 0.913 20 H 0.082 0.918 21 H 0.067 0.933 22 H 0.121 0.879 23 H 0.101 0.899 24 H 0.117 0.883 25 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.529 -2.056 2.839 3.545 hybrid contribution 0.025 0.063 0.087 0.110 sum 0.555 -1.993 2.927 3.584 Atomic orbital electron populations 1.21907 0.93429 1.01319 1.02203 1.22388 0.97784 0.79128 1.03006 1.45050 1.35685 1.12081 1.06123 1.21859 1.16443 1.05256 0.82257 0.83046 1.26515 0.96551 0.96138 1.02857 1.70539 1.15912 1.16608 1.30951 0.85225 0.79751 0.80317 0.76463 1.16981 1.18582 1.18444 1.16586 0.95034 0.89220 0.81957 1.93426 1.60833 1.16875 1.89535 1.22685 1.00833 0.91355 0.93960 1.40694 0.91039 1.06741 1.17139 1.73787 1.15750 1.16302 0.93886 1.54417 1.53845 1.18745 1.12973 1.84877 1.53696 1.16342 1.19418 0.91296 0.91813 0.93306 0.87852 0.89940 0.88257 0.74783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 8.93 37.16 0.33 -2.35 15 2 C 0.10 2.05 4.86 -4.04 -0.02 2.03 15 3 N -0.29 -6.78 2.64 -116.92 -0.31 -7.09 15 4 C -0.10 -2.20 9.40 -15.14 -0.14 -2.34 15 5 H 0.15 3.29 7.25 -52.49 -0.38 2.91 15 6 C 0.00 0.02 4.92 -17.53 -0.09 -0.07 15 7 N -0.71 -12.56 8.37 55.46 0.46 -12.10 15 8 Si 0.96 13.24 29.60 -169.99 -5.03 8.21 15 9 H -0.25 -3.51 7.11 56.52 0.40 -3.11 15 10 H -0.26 -3.57 7.11 56.52 0.40 -3.16 15 11 H -0.26 -3.48 7.11 56.52 0.40 -3.08 15 12 C 0.36 9.74 7.46 -16.85 -0.13 9.61 15 13 O -0.70 -21.13 17.51 -12.02 -0.21 -21.34 15 14 C 0.04 1.16 6.39 -40.63 -0.26 0.90 15 15 C -0.35 -8.85 9.06 -19.11 -0.17 -9.02 15 16 N -0.18 -4.33 12.28 51.50 0.63 -3.70 15 17 N -0.58 -12.76 7.54 60.34 0.46 -12.31 15 18 S 0.11 2.48 23.89 -107.50 -2.57 -0.08 15 19 H 0.07 1.41 5.98 -51.93 -0.31 1.10 15 20 H 0.06 1.48 5.70 -51.93 -0.30 1.18 15 21 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.10 2.27 5.74 -51.93 -0.30 1.97 15 23 H 0.08 1.58 6.11 -51.93 -0.32 1.27 15 24 H 0.31 4.62 8.32 -40.82 -0.34 4.28 15 25 H 0.41 7.36 8.96 -189.64 -1.70 5.66 15 LS Contribution 230.37 15.07 3.47 3.47 Total: -1.00 -30.26 230.37 -6.43 -36.69 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -2.86 Total: 9.49 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.47 Total: -1.24 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 1.24 Total: -35.19 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.21 Total: -21.34 kcal Atomic # 14 Polarization: 13.24 SS G_CDS: -5.03 Total: 8.21 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.57 Total: -0.08 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.26 -6.43 -36.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885806910.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.343 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds