Wall clock time and date at job start Mon Mar 30 2020 02:56:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46502 * 109.46750 * 2 1
4 4 C 1.37298 * 119.99858 * 96.38286 * 3 2 1
5 5 H 1.07998 * 119.99485 * 166.04401 * 4 3 2
6 6 C 1.38132 * 120.00111 * 346.03580 * 4 3 2
7 7 N 1.31981 * 120.00097 * 339.06486 * 6 4 3
8 8 Si 1.86805 * 120.00129 * 159.06125 * 6 4 3
9 9 H 1.48499 * 109.46774 * 0.02562 * 8 6 4
10 10 H 1.48504 * 109.46839 * 119.99954 * 8 6 4
11 11 H 1.48494 * 109.47263 * 240.00427 * 8 6 4
12 12 C 1.34772 * 120.00050 * 276.36877 * 3 2 1
13 13 O 1.33236 * 120.00430 * 186.25350 * 12 3 2
14 14 C 1.36610 * 119.99735 * 6.26582 * 12 3 2
15 15 C 1.36961 * 132.71570 * 4.39644 * 14 12 3
16 16 N 1.29460 * 130.11902 * 180.02562 * 15 14 12
17 17 N 1.29451 * 108.33071 * 359.97438 * 16 15 14
18 18 S 1.69819 * 110.88373 * 359.97438 * 17 16 15
19 19 H 1.09002 * 109.47176 * 300.00036 * 1 2 3
20 20 H 1.09002 * 109.46894 * 60.00010 * 1 2 3
21 21 H 1.08993 * 109.47234 * 180.02562 * 1 2 3
22 22 H 1.08996 * 109.47433 * 239.99632 * 2 1 3
23 23 H 1.08998 * 109.46652 * 119.99536 * 2 1 3
24 24 H 0.97001 * 120.00059 * 179.97438 * 7 6 4
25 25 H 0.96999 * 124.55629 * 179.97438 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.3717 1.9844 1.1817
5 1 2.9364 2.9049 1.1703
6 6 2.0047 1.4141 2.3851
7 7 1.0004 0.5591 2.4311
8 14 2.9302 1.8527 3.9473
9 1 4.0049 2.8268 3.6290
10 1 1.9905 2.4556 4.9265
11 1 3.5304 0.6251 4.5284
12 6 2.1208 2.0598 -1.1600
13 8 2.6802 3.2688 -1.1774
14 6 1.6508 1.5079 -2.3179
15 6 0.9748 0.3474 -2.5865
16 7 0.5511 -0.1295 -3.7130
17 7 0.8715 0.7008 -4.6530
18 16 1.6980 2.0424 -4.0198
19 1 -0.3633 0.5138 0.8900
20 1 -0.3633 0.5138 -0.8900
21 1 -0.3633 -1.0276 0.0005
22 1 1.8934 -0.5139 -0.8899
23 1 1.8933 -0.5138 0.8900
24 1 0.7429 0.1583 3.2761
25 1 0.6670 0.5738 -5.5926
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885806910.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:24
Heat of formation + Delta-G solvation = 92.030638 kcal
Electronic energy + Delta-G solvation = -13715.196600 eV
Core-core repulsion = 11245.164480 eV
Total energy + Delta-G solvation = -2470.032120 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.047 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.04977 -39.17647 -36.56909 -34.35034 -32.62093 -31.04098 -28.91751 -27.30288
-24.42753 -23.06700 -20.73003 -19.70881 -18.84529 -18.20306 -17.37748 -16.74092
-15.78030 -15.34438 -14.90538 -14.78998 -14.57607 -14.20750 -13.82386 -13.27618
-12.80515 -12.58324 -12.08356 -11.99657 -11.76286 -11.36555 -10.92688 -10.60575
-10.16686 -9.83507 -9.78951 -9.48192 -7.51105 -6.36945 -1.56261 0.61599
0.95543 1.14702 1.55671 1.76512 1.82094 2.10271 2.12425 2.33107
3.40153 3.66309 4.05793 4.24036 4.68860 4.78665 4.83575 4.93993
5.05731 5.27559 5.43779 5.57237 5.90820 6.04293 6.24491 6.81215
6.94087 7.55250 8.35381
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.049606 B = 0.008907 C = 0.007731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 564.311231 B = 3142.761286 C = 3621.071022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.092 3.908
3 N -0.295 5.295
4 C 0.139 3.861
5 H 0.190 0.810
6 C -0.057 4.057
7 N -0.599 5.599
8 Si 1.054 2.946
9 H -0.241 1.241
10 H -0.237 1.237
11 H -0.233 1.233
12 C 0.326 3.674
13 O -0.759 6.759
14 C -0.093 4.093
15 C -0.359 4.359
16 N -0.277 5.277
17 N -0.637 5.637
18 S -0.059 6.059
19 H 0.077 0.923
20 H 0.031 0.969
21 H 0.075 0.925
22 H 0.095 0.905
23 H 0.122 0.878
24 H 0.360 0.640
25 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.275 -2.768 19.773 20.095
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.027 4.027
3 N 0.020 4.980
4 C -0.036 4.036
5 H 0.207 0.793
6 C -0.286 4.286
7 N -0.226 5.226
8 Si 0.863 3.137
9 H -0.164 1.164
10 H -0.160 1.160
11 H -0.156 1.156
12 C 0.148 3.852
13 O -0.677 6.677
14 C -0.213 4.213
15 C -0.572 4.572
16 N -0.088 5.088
17 N -0.461 5.461
18 S 0.087 5.913
19 H 0.096 0.904
20 H 0.050 0.950
21 H 0.094 0.906
22 H 0.113 0.887
23 H 0.139 0.861
24 H 0.177 0.823
25 H 0.248 0.752
Dipole moment (debyes) X Y Z Total
from point charges 1.930 -2.618 17.556 17.854
hybrid contribution -0.124 0.289 -1.071 1.116
sum 1.806 -2.329 16.485 16.746
Atomic orbital electron populations
1.21803 0.92109 1.02890 1.00954 1.22812 0.98690 0.76674 1.04541
1.46309 1.31186 1.13807 1.06692 1.24650 0.95800 0.99980 0.83193
0.79287 1.28434 0.99110 0.96062 1.04967 1.70425 1.11013 1.04691
1.36460 0.84021 0.78351 0.81634 0.69676 1.16378 1.16015 1.15576
1.16499 0.97156 0.89020 0.82511 1.93332 1.65827 1.19113 1.89448
1.21809 1.11871 0.94987 0.92679 1.41383 0.89944 1.06715 1.19109
1.73248 1.22439 1.18595 0.94538 1.52128 1.62968 1.19655 1.11307
1.83951 1.64261 1.22839 1.20256 0.90429 0.94955 0.90606 0.88669
0.86081 0.82294 0.75186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 24.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.42 8.93 71.98 0.64 -3.77 15
2 C 0.09 3.37 4.86 86.38 0.42 3.79 15
3 N -0.29 -12.18 2.64 -636.67 -1.68 -13.86 15
4 C 0.14 4.12 9.40 83.81 0.79 4.90 15
5 H 0.19 5.41 7.25 -2.91 -0.02 5.39 15
6 C -0.06 -1.06 4.92 84.65 0.42 -0.65 15
7 N -0.60 -11.35 8.37 21.54 0.18 -11.17 15
8 Si 1.05 10.24 29.60 68.60 2.03 12.27 15
9 H -0.24 -2.78 7.11 99.48 0.71 -2.07 15
10 H -0.24 -2.13 7.11 99.48 0.71 -1.42 15
11 H -0.23 -1.94 7.11 99.48 0.71 -1.24 15
12 C 0.33 18.28 7.46 83.86 0.63 18.91 15
13 O -0.76 -47.84 17.51 -65.92 -1.15 -49.00 15
14 C -0.09 -5.69 6.39 21.59 0.14 -5.55 15
15 C -0.36 -21.80 9.06 84.77 0.77 -21.03 15
16 N -0.28 -17.15 12.28 9.02 0.11 -17.04 15
17 N -0.64 -37.67 7.54 37.00 0.28 -37.39 15
18 S -0.06 -3.61 23.89 -56.49 -1.35 -4.96 15
19 H 0.08 2.48 5.98 -2.39 -0.01 2.47 15
20 H 0.03 1.54 5.70 -2.39 -0.01 1.52 15
21 H 0.08 2.48 8.14 -2.39 -0.02 2.46 15
22 H 0.10 4.22 5.74 -2.39 -0.01 4.21 15
23 H 0.12 3.27 6.11 -2.39 -0.01 3.25 15
24 H 0.36 4.09 8.32 -92.71 -0.77 3.32 15
25 H 0.40 21.03 8.96 -219.62 -1.97 19.06 15
Total: -1.00 -89.10 230.37 1.50 -87.60
By element:
Atomic # 1 Polarization: 37.66 SS G_CDS: -0.72 Total: 36.95 kcal
Atomic # 6 Polarization: -7.20 SS G_CDS: 3.80 Total: -3.40 kcal
Atomic # 7 Polarization: -78.35 SS G_CDS: -1.11 Total: -79.46 kcal
Atomic # 8 Polarization: -47.84 SS G_CDS: -1.15 Total: -49.00 kcal
Atomic # 14 Polarization: 10.24 SS G_CDS: 2.03 Total: 12.27 kcal
Atomic # 16 Polarization: -3.61 SS G_CDS: -1.35 Total: -4.96 kcal
Total: -89.10 1.50 -87.60 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885806910.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 179.635 kcal
(2) G-P(sol) polarization free energy of solvation -89.100 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.535 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.604 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds