Wall clock time and date at job start Mon Mar 30 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46750 * 2 1 4 4 C 1.37298 * 119.99858 * 96.38286 * 3 2 1 5 5 H 1.07998 * 119.99485 * 166.04401 * 4 3 2 6 6 C 1.38132 * 120.00111 * 346.03580 * 4 3 2 7 7 N 1.31981 * 120.00097 * 339.06486 * 6 4 3 8 8 Si 1.86805 * 120.00129 * 159.06125 * 6 4 3 9 9 H 1.48499 * 109.46774 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46839 * 119.99954 * 8 6 4 11 11 H 1.48494 * 109.47263 * 240.00427 * 8 6 4 12 12 C 1.34772 * 120.00050 * 276.36877 * 3 2 1 13 13 O 1.33236 * 120.00430 * 186.25350 * 12 3 2 14 14 C 1.36610 * 119.99735 * 6.26582 * 12 3 2 15 15 C 1.36961 * 132.71570 * 4.39644 * 14 12 3 16 16 N 1.29460 * 130.11902 * 180.02562 * 15 14 12 17 17 N 1.29451 * 108.33071 * 359.97438 * 16 15 14 18 18 S 1.69819 * 110.88373 * 359.97438 * 17 16 15 19 19 H 1.09002 * 109.47176 * 300.00036 * 1 2 3 20 20 H 1.09002 * 109.46894 * 60.00010 * 1 2 3 21 21 H 1.08993 * 109.47234 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47433 * 239.99632 * 2 1 3 23 23 H 1.08998 * 109.46652 * 119.99536 * 2 1 3 24 24 H 0.97001 * 120.00059 * 179.97438 * 7 6 4 25 25 H 0.96999 * 124.55629 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3717 1.9844 1.1817 5 1 2.9364 2.9049 1.1703 6 6 2.0047 1.4141 2.3851 7 7 1.0004 0.5591 2.4311 8 14 2.9302 1.8527 3.9473 9 1 4.0049 2.8268 3.6290 10 1 1.9905 2.4556 4.9265 11 1 3.5304 0.6251 4.5284 12 6 2.1208 2.0598 -1.1600 13 8 2.6802 3.2688 -1.1774 14 6 1.6508 1.5079 -2.3179 15 6 0.9748 0.3474 -2.5865 16 7 0.5511 -0.1295 -3.7130 17 7 0.8715 0.7008 -4.6530 18 16 1.6980 2.0424 -4.0198 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 0.7429 0.1583 3.2761 25 1 0.6670 0.5738 -5.5926 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885806910.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:24 Heat of formation + Delta-G solvation = 92.030638 kcal Electronic energy + Delta-G solvation = -13715.196600 eV Core-core repulsion = 11245.164480 eV Total energy + Delta-G solvation = -2470.032120 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.04977 -39.17647 -36.56909 -34.35034 -32.62093 -31.04098 -28.91751 -27.30288 -24.42753 -23.06700 -20.73003 -19.70881 -18.84529 -18.20306 -17.37748 -16.74092 -15.78030 -15.34438 -14.90538 -14.78998 -14.57607 -14.20750 -13.82386 -13.27618 -12.80515 -12.58324 -12.08356 -11.99657 -11.76286 -11.36555 -10.92688 -10.60575 -10.16686 -9.83507 -9.78951 -9.48192 -7.51105 -6.36945 -1.56261 0.61599 0.95543 1.14702 1.55671 1.76512 1.82094 2.10271 2.12425 2.33107 3.40153 3.66309 4.05793 4.24036 4.68860 4.78665 4.83575 4.93993 5.05731 5.27559 5.43779 5.57237 5.90820 6.04293 6.24491 6.81215 6.94087 7.55250 8.35381 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.049606 B = 0.008907 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.311231 B = 3142.761286 C = 3621.071022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.092 3.908 3 N -0.295 5.295 4 C 0.139 3.861 5 H 0.190 0.810 6 C -0.057 4.057 7 N -0.599 5.599 8 Si 1.054 2.946 9 H -0.241 1.241 10 H -0.237 1.237 11 H -0.233 1.233 12 C 0.326 3.674 13 O -0.759 6.759 14 C -0.093 4.093 15 C -0.359 4.359 16 N -0.277 5.277 17 N -0.637 5.637 18 S -0.059 6.059 19 H 0.077 0.923 20 H 0.031 0.969 21 H 0.075 0.925 22 H 0.095 0.905 23 H 0.122 0.878 24 H 0.360 0.640 25 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 -2.768 19.773 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.027 4.027 3 N 0.020 4.980 4 C -0.036 4.036 5 H 0.207 0.793 6 C -0.286 4.286 7 N -0.226 5.226 8 Si 0.863 3.137 9 H -0.164 1.164 10 H -0.160 1.160 11 H -0.156 1.156 12 C 0.148 3.852 13 O -0.677 6.677 14 C -0.213 4.213 15 C -0.572 4.572 16 N -0.088 5.088 17 N -0.461 5.461 18 S 0.087 5.913 19 H 0.096 0.904 20 H 0.050 0.950 21 H 0.094 0.906 22 H 0.113 0.887 23 H 0.139 0.861 24 H 0.177 0.823 25 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.930 -2.618 17.556 17.854 hybrid contribution -0.124 0.289 -1.071 1.116 sum 1.806 -2.329 16.485 16.746 Atomic orbital electron populations 1.21803 0.92109 1.02890 1.00954 1.22812 0.98690 0.76674 1.04541 1.46309 1.31186 1.13807 1.06692 1.24650 0.95800 0.99980 0.83193 0.79287 1.28434 0.99110 0.96062 1.04967 1.70425 1.11013 1.04691 1.36460 0.84021 0.78351 0.81634 0.69676 1.16378 1.16015 1.15576 1.16499 0.97156 0.89020 0.82511 1.93332 1.65827 1.19113 1.89448 1.21809 1.11871 0.94987 0.92679 1.41383 0.89944 1.06715 1.19109 1.73248 1.22439 1.18595 0.94538 1.52128 1.62968 1.19655 1.11307 1.83951 1.64261 1.22839 1.20256 0.90429 0.94955 0.90606 0.88669 0.86081 0.82294 0.75186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 8.93 71.98 0.64 -3.77 15 2 C 0.09 3.37 4.86 86.38 0.42 3.79 15 3 N -0.29 -12.18 2.64 -636.67 -1.68 -13.86 15 4 C 0.14 4.12 9.40 83.81 0.79 4.90 15 5 H 0.19 5.41 7.25 -2.91 -0.02 5.39 15 6 C -0.06 -1.06 4.92 84.65 0.42 -0.65 15 7 N -0.60 -11.35 8.37 21.54 0.18 -11.17 15 8 Si 1.05 10.24 29.60 68.60 2.03 12.27 15 9 H -0.24 -2.78 7.11 99.48 0.71 -2.07 15 10 H -0.24 -2.13 7.11 99.48 0.71 -1.42 15 11 H -0.23 -1.94 7.11 99.48 0.71 -1.24 15 12 C 0.33 18.28 7.46 83.86 0.63 18.91 15 13 O -0.76 -47.84 17.51 -65.92 -1.15 -49.00 15 14 C -0.09 -5.69 6.39 21.59 0.14 -5.55 15 15 C -0.36 -21.80 9.06 84.77 0.77 -21.03 15 16 N -0.28 -17.15 12.28 9.02 0.11 -17.04 15 17 N -0.64 -37.67 7.54 37.00 0.28 -37.39 15 18 S -0.06 -3.61 23.89 -56.49 -1.35 -4.96 15 19 H 0.08 2.48 5.98 -2.39 -0.01 2.47 15 20 H 0.03 1.54 5.70 -2.39 -0.01 1.52 15 21 H 0.08 2.48 8.14 -2.39 -0.02 2.46 15 22 H 0.10 4.22 5.74 -2.39 -0.01 4.21 15 23 H 0.12 3.27 6.11 -2.39 -0.01 3.25 15 24 H 0.36 4.09 8.32 -92.71 -0.77 3.32 15 25 H 0.40 21.03 8.96 -219.62 -1.97 19.06 15 Total: -1.00 -89.10 230.37 1.50 -87.60 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.72 Total: 36.95 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 3.80 Total: -3.40 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -1.11 Total: -79.46 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -1.15 Total: -49.00 kcal Atomic # 14 Polarization: 10.24 SS G_CDS: 2.03 Total: 12.27 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.35 Total: -4.96 kcal Total: -89.10 1.50 -87.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885806910.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.635 kcal (2) G-P(sol) polarization free energy of solvation -89.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds