Wall clock time and date at job start Mon Mar 30 2020 02:48:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38189 * 119.60966 * 2 1
4 4 C 1.38668 * 119.19664 * 179.75025 * 3 2 1
5 5 C 1.38606 * 118.43092 * 0.47351 * 4 3 2
6 6 C 1.50707 * 120.42367 * 179.78422 * 5 4 3
7 7 H 1.09002 * 109.46993 * 214.72050 * 6 5 4
8 8 O 1.42901 * 109.46725 * 334.71568 * 6 5 4
9 9 C 1.50696 * 109.47007 * 94.71427 * 6 5 4
10 10 H 1.07999 * 120.00319 * 0.02562 * 9 6 5
11 11 C 1.37885 * 119.99717 * 180.02562 * 9 6 5
12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 6
13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 6
14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9
15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9
16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9
17 17 C 1.38350 * 119.15206 * 359.50249 * 5 4 3
18 18 Cl 1.73606 * 119.63309 * 180.25392 * 17 5 4
19 19 N 1.31878 * 119.61255 * 179.97438 * 2 1 3
20 20 H 1.09002 * 109.46484 * 270.01462 * 1 2 3
21 21 H 1.08986 * 109.47422 * 30.01939 * 1 2 3
22 22 H 1.09004 * 109.46962 * 150.02894 * 1 2 3
23 23 H 1.08007 * 120.40195 * 359.97438 * 3 2 1
24 24 H 1.07999 * 120.78421 * 180.23258 * 4 3 2
25 25 H 0.96709 * 114.00052 * 60.00302 * 8 6 5
26 26 H 0.97001 * 119.99646 * 179.97438 * 12 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1898 1.2014 0.0000
4 6 3.5764 1.1914 0.0053
5 6 4.2276 -0.0321 0.0003
6 6 5.7333 -0.0954 0.0008
7 1 6.0612 -0.9520 -0.5881
8 8 6.2605 1.1043 -0.5692
9 6 6.2295 -0.2393 1.4164
10 1 5.5251 -0.2812 2.2340
11 6 7.5830 -0.3174 1.6679
12 7 8.0160 -0.4435 2.9033
13 14 8.8014 -0.2441 0.2539
14 1 9.0666 -1.6183 -0.2428
15 1 8.2355 0.5788 -0.8451
16 1 10.0708 0.3654 0.7255
17 6 3.4775 -1.1947 0.0008
18 17 4.2802 -2.7341 0.0013
19 7 2.1587 -1.1465 0.0005
20 1 -0.3632 0.0003 1.0277
21 1 -0.3633 0.8897 -0.5141
22 1 -0.3633 -0.8903 -0.5134
23 1 1.6499 2.1369 -0.0004
24 1 4.1358 2.1153 0.0092
25 1 6.0085 1.9088 -0.0952
26 1 8.9682 -0.4988 3.0802
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001536168049.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:48:11
Heat of formation + Delta-G solvation = -25.174626 kcal
Electronic energy + Delta-G solvation = -13473.439569 eV
Core-core repulsion = 10963.988590 eV
Total energy + Delta-G solvation = -2509.450979 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.045 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-40.01181 -36.46378 -36.02799 -32.46807 -32.35477 -31.79355 -28.79458 -26.16482
-23.20086 -22.75369 -20.62119 -17.63040 -16.70117 -16.26691 -15.35426 -14.85049
-14.42414 -13.86950 -13.45021 -13.14207 -12.77219 -12.67906 -12.36991 -12.02931
-11.69860 -11.14397 -11.00202 -10.70823 -10.66040 -10.27448 -9.46852 -9.36261
-9.11142 -8.75509 -8.55822 -8.06277 -6.19042 -4.31780 1.35045 1.59273
2.40159 3.35174 3.44656 3.68085 3.99828 4.46833 4.64847 4.99010
5.07060 5.27998 5.37335 5.51958 5.62296 5.65796 5.77999 5.82557
6.12595 6.34683 6.43583 6.87503 7.13438 7.39656 8.11072 8.18922
8.68026 8.86906 9.42378 10.90947
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.035960 B = 0.009727 C = 0.008717
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 778.450789 B = 2878.000597 C = 3211.462263
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.096 4.096
2 C 0.115 3.885
3 C -0.170 4.170
4 C -0.064 4.064
5 C -0.101 4.101
6 C 0.227 3.773
7 H 0.078 0.922
8 O -0.574 6.574
9 C -0.552 4.552
10 H 0.074 0.926
11 C 0.090 3.910
12 N -0.886 5.886
13 Si 0.864 3.136
14 H -0.283 1.283
15 H -0.217 1.217
16 H -0.293 1.293
17 C 0.179 3.821
18 Cl -0.026 7.026
19 N -0.483 5.483
20 H 0.075 0.925
21 H 0.072 0.928
22 H 0.074 0.926
23 H 0.134 0.866
24 H 0.141 0.859
25 H 0.356 0.644
26 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.575 2.867 -6.507 12.744
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.023 4.023
3 C -0.190 4.190
4 C -0.090 4.090
5 C -0.104 4.104
6 C 0.169 3.831
7 H 0.095 0.905
8 O -0.380 6.380
9 C -0.589 4.589
10 H 0.092 0.908
11 C -0.115 4.115
12 N -0.522 5.522
13 Si 0.690 3.310
14 H -0.210 1.210
15 H -0.140 1.140
16 H -0.220 1.220
17 C 0.015 3.985
18 Cl 0.002 6.998
19 N -0.195 5.195
20 H 0.093 0.907
21 H 0.091 0.909
22 H 0.093 0.907
23 H 0.152 0.848
24 H 0.159 0.841
25 H 0.203 0.797
26 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -10.575 1.512 -6.822 12.675
hybrid contribution 1.002 0.849 0.080 1.316
sum -9.573 2.361 -6.742 11.944
Atomic orbital electron populations
1.20632 0.88831 1.03054 1.02842 1.20963 0.96498 0.87480 0.97364
1.21896 0.94866 0.98947 1.03292 1.21324 0.93795 0.97953 0.95914
1.21688 1.00834 0.91659 0.96243 1.18929 0.82656 0.85695 0.95788
0.90454 1.86773 1.76130 1.16836 1.58288 1.21181 0.93190 1.54007
0.90509 0.90819 1.24927 0.98468 0.92336 0.95818 1.69932 1.15171
1.47523 1.19561 0.87117 0.79666 0.79235 0.84975 1.20987 1.13952
1.21951 1.21345 0.88973 0.87716 1.00445 1.98385 1.76967 1.28136
1.96288 1.66736 1.08486 1.30378 1.13902 0.90677 0.90894 0.90747
0.84805 0.84136 0.79679 0.92358
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.07 10.17 36.01 0.37 -0.70 15
2 C 0.12 1.81 6.78 -82.59 -0.56 1.25 15
3 C -0.17 -2.50 9.74 -39.44 -0.38 -2.89 15
4 C -0.06 -1.09 9.41 -39.29 -0.37 -1.46 15
5 C -0.10 -2.08 5.02 -104.44 -0.52 -2.60 15
6 C 0.23 5.24 2.07 -29.03 -0.06 5.18 15
7 H 0.08 1.86 6.57 -51.93 -0.34 1.52 15
8 O -0.57 -12.41 9.81 -35.23 -0.35 -12.76 15
9 C -0.55 -14.90 9.33 -34.44 -0.32 -15.22 15
10 H 0.07 2.21 7.98 -52.49 -0.42 1.79 15
11 C 0.09 2.52 5.47 -17.82 -0.10 2.42 15
12 N -0.89 -26.41 13.96 55.43 0.77 -25.64 15
13 Si 0.86 21.15 26.99 -169.99 -4.59 16.56 15
14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15
15 H -0.22 -5.14 5.30 56.52 0.30 -4.84 15
16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 15
17 C 0.18 3.69 7.27 -17.45 -0.13 3.56 15
18 Cl -0.03 -0.53 27.57 -51.86 -1.43 -1.96 15
19 N -0.48 -9.16 10.25 -6.62 -0.07 -9.22 15
20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15
21 H 0.07 0.62 8.08 -51.94 -0.42 0.20 15
22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15
23 H 0.13 1.46 8.06 -52.48 -0.42 1.03 15
24 H 0.14 2.06 6.53 -52.49 -0.34 1.71 15
25 H 0.36 6.56 7.38 45.56 0.34 6.89 15
26 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15
LS Contribution 242.54 15.07 3.66 3.66
Total: -1.00 -31.23 242.54 -5.77 -37.00
By element:
Atomic # 1 Polarization: 4.52 SS G_CDS: -1.69 Total: 2.83 kcal
Atomic # 6 Polarization: -8.38 SS G_CDS: -2.08 Total: -10.46 kcal
Atomic # 7 Polarization: -35.57 SS G_CDS: 0.71 Total: -34.86 kcal
Atomic # 8 Polarization: -12.41 SS G_CDS: -0.35 Total: -12.76 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -4.59 Total: 16.56 kcal
Atomic # 17 Polarization: -0.53 SS G_CDS: -1.43 Total: -1.96 kcal
Total LS contribution 3.66 Total: 3.66 kcal
Total: -31.23 -5.77 -37.00 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001536168049.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.822 kcal
(2) G-P(sol) polarization free energy of solvation -31.227 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.404 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.175 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds