Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38189 * 119.60966 * 2 1 4 4 C 1.38668 * 119.19664 * 179.75025 * 3 2 1 5 5 C 1.38606 * 118.43092 * 0.47351 * 4 3 2 6 6 C 1.50707 * 120.42367 * 179.78422 * 5 4 3 7 7 H 1.09002 * 109.46993 * 214.72050 * 6 5 4 8 8 O 1.42901 * 109.46725 * 334.71568 * 6 5 4 9 9 C 1.50696 * 109.47007 * 94.71427 * 6 5 4 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 6 5 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 6 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.38350 * 119.15206 * 359.50249 * 5 4 3 18 18 Cl 1.73606 * 119.63309 * 180.25392 * 17 5 4 19 19 N 1.31878 * 119.61255 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.46484 * 270.01462 * 1 2 3 21 21 H 1.08986 * 109.47422 * 30.01939 * 1 2 3 22 22 H 1.09004 * 109.46962 * 150.02894 * 1 2 3 23 23 H 1.08007 * 120.40195 * 359.97438 * 3 2 1 24 24 H 1.07999 * 120.78421 * 180.23258 * 4 3 2 25 25 H 0.96709 * 114.00052 * 60.00302 * 8 6 5 26 26 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.2014 0.0000 4 6 3.5764 1.1914 0.0053 5 6 4.2276 -0.0321 0.0003 6 6 5.7333 -0.0954 0.0008 7 1 6.0612 -0.9520 -0.5881 8 8 6.2605 1.1043 -0.5692 9 6 6.2295 -0.2393 1.4164 10 1 5.5251 -0.2812 2.2340 11 6 7.5830 -0.3174 1.6679 12 7 8.0160 -0.4435 2.9033 13 14 8.8014 -0.2441 0.2539 14 1 9.0666 -1.6183 -0.2428 15 1 8.2355 0.5788 -0.8451 16 1 10.0708 0.3654 0.7255 17 6 3.4775 -1.1947 0.0008 18 17 4.2802 -2.7341 0.0013 19 7 2.1587 -1.1465 0.0005 20 1 -0.3632 0.0003 1.0277 21 1 -0.3633 0.8897 -0.5141 22 1 -0.3633 -0.8903 -0.5134 23 1 1.6499 2.1369 -0.0004 24 1 4.1358 2.1153 0.0092 25 1 6.0085 1.9088 -0.0952 26 1 8.9682 -0.4988 3.0802 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536168049.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = -25.174626 kcal Electronic energy + Delta-G solvation = -13473.439569 eV Core-core repulsion = 10963.988590 eV Total energy + Delta-G solvation = -2509.450979 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01181 -36.46378 -36.02799 -32.46807 -32.35477 -31.79355 -28.79458 -26.16482 -23.20086 -22.75369 -20.62119 -17.63040 -16.70117 -16.26691 -15.35426 -14.85049 -14.42414 -13.86950 -13.45021 -13.14207 -12.77219 -12.67906 -12.36991 -12.02931 -11.69860 -11.14397 -11.00202 -10.70823 -10.66040 -10.27448 -9.46852 -9.36261 -9.11142 -8.75509 -8.55822 -8.06277 -6.19042 -4.31780 1.35045 1.59273 2.40159 3.35174 3.44656 3.68085 3.99828 4.46833 4.64847 4.99010 5.07060 5.27998 5.37335 5.51958 5.62296 5.65796 5.77999 5.82557 6.12595 6.34683 6.43583 6.87503 7.13438 7.39656 8.11072 8.18922 8.68026 8.86906 9.42378 10.90947 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.009727 C = 0.008717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.450789 B = 2878.000597 C = 3211.462263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.115 3.885 3 C -0.170 4.170 4 C -0.064 4.064 5 C -0.101 4.101 6 C 0.227 3.773 7 H 0.078 0.922 8 O -0.574 6.574 9 C -0.552 4.552 10 H 0.074 0.926 11 C 0.090 3.910 12 N -0.886 5.886 13 Si 0.864 3.136 14 H -0.283 1.283 15 H -0.217 1.217 16 H -0.293 1.293 17 C 0.179 3.821 18 Cl -0.026 7.026 19 N -0.483 5.483 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.134 0.866 24 H 0.141 0.859 25 H 0.356 0.644 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.575 2.867 -6.507 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.023 4.023 3 C -0.190 4.190 4 C -0.090 4.090 5 C -0.104 4.104 6 C 0.169 3.831 7 H 0.095 0.905 8 O -0.380 6.380 9 C -0.589 4.589 10 H 0.092 0.908 11 C -0.115 4.115 12 N -0.522 5.522 13 Si 0.690 3.310 14 H -0.210 1.210 15 H -0.140 1.140 16 H -0.220 1.220 17 C 0.015 3.985 18 Cl 0.002 6.998 19 N -0.195 5.195 20 H 0.093 0.907 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.152 0.848 24 H 0.159 0.841 25 H 0.203 0.797 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.575 1.512 -6.822 12.675 hybrid contribution 1.002 0.849 0.080 1.316 sum -9.573 2.361 -6.742 11.944 Atomic orbital electron populations 1.20632 0.88831 1.03054 1.02842 1.20963 0.96498 0.87480 0.97364 1.21896 0.94866 0.98947 1.03292 1.21324 0.93795 0.97953 0.95914 1.21688 1.00834 0.91659 0.96243 1.18929 0.82656 0.85695 0.95788 0.90454 1.86773 1.76130 1.16836 1.58288 1.21181 0.93190 1.54007 0.90509 0.90819 1.24927 0.98468 0.92336 0.95818 1.69932 1.15171 1.47523 1.19561 0.87117 0.79666 0.79235 0.84975 1.20987 1.13952 1.21951 1.21345 0.88973 0.87716 1.00445 1.98385 1.76967 1.28136 1.96288 1.66736 1.08486 1.30378 1.13902 0.90677 0.90894 0.90747 0.84805 0.84136 0.79679 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.17 36.01 0.37 -0.70 15 2 C 0.12 1.81 6.78 -82.59 -0.56 1.25 15 3 C -0.17 -2.50 9.74 -39.44 -0.38 -2.89 15 4 C -0.06 -1.09 9.41 -39.29 -0.37 -1.46 15 5 C -0.10 -2.08 5.02 -104.44 -0.52 -2.60 15 6 C 0.23 5.24 2.07 -29.03 -0.06 5.18 15 7 H 0.08 1.86 6.57 -51.93 -0.34 1.52 15 8 O -0.57 -12.41 9.81 -35.23 -0.35 -12.76 15 9 C -0.55 -14.90 9.33 -34.44 -0.32 -15.22 15 10 H 0.07 2.21 7.98 -52.49 -0.42 1.79 15 11 C 0.09 2.52 5.47 -17.82 -0.10 2.42 15 12 N -0.89 -26.41 13.96 55.43 0.77 -25.64 15 13 Si 0.86 21.15 26.99 -169.99 -4.59 16.56 15 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 15 H -0.22 -5.14 5.30 56.52 0.30 -4.84 15 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 15 17 C 0.18 3.69 7.27 -17.45 -0.13 3.56 15 18 Cl -0.03 -0.53 27.57 -51.86 -1.43 -1.96 15 19 N -0.48 -9.16 10.25 -6.62 -0.07 -9.22 15 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.07 0.62 8.08 -51.94 -0.42 0.20 15 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.13 1.46 8.06 -52.48 -0.42 1.03 15 24 H 0.14 2.06 6.53 -52.49 -0.34 1.71 15 25 H 0.36 6.56 7.38 45.56 0.34 6.89 15 26 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 LS Contribution 242.54 15.07 3.66 3.66 Total: -1.00 -31.23 242.54 -5.77 -37.00 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -1.69 Total: 2.83 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.08 Total: -10.46 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.71 Total: -34.86 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.35 Total: -12.76 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.59 Total: 16.56 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.43 Total: -1.96 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.23 -5.77 -37.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536168049.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.822 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds