Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38189 * 119.60966 * 2 1 4 4 C 1.38668 * 119.19664 * 179.75025 * 3 2 1 5 5 C 1.38606 * 118.43092 * 0.47351 * 4 3 2 6 6 C 1.50707 * 120.42367 * 179.78422 * 5 4 3 7 7 H 1.09002 * 109.46993 * 214.72050 * 6 5 4 8 8 O 1.42901 * 109.46725 * 334.71568 * 6 5 4 9 9 C 1.50696 * 109.47007 * 94.71427 * 6 5 4 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 6 5 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 6 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.38350 * 119.15206 * 359.50249 * 5 4 3 18 18 Cl 1.73606 * 119.63309 * 180.25392 * 17 5 4 19 19 N 1.31878 * 119.61255 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.46484 * 270.01462 * 1 2 3 21 21 H 1.08986 * 109.47422 * 30.01939 * 1 2 3 22 22 H 1.09004 * 109.46962 * 150.02894 * 1 2 3 23 23 H 1.08007 * 120.40195 * 359.97438 * 3 2 1 24 24 H 1.07999 * 120.78421 * 180.23258 * 4 3 2 25 25 H 0.96709 * 114.00052 * 60.00302 * 8 6 5 26 26 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.2014 0.0000 4 6 3.5764 1.1914 0.0053 5 6 4.2276 -0.0321 0.0003 6 6 5.7333 -0.0954 0.0008 7 1 6.0612 -0.9520 -0.5881 8 8 6.2605 1.1043 -0.5692 9 6 6.2295 -0.2393 1.4164 10 1 5.5251 -0.2812 2.2340 11 6 7.5830 -0.3174 1.6679 12 7 8.0160 -0.4435 2.9033 13 14 8.8014 -0.2441 0.2539 14 1 9.0666 -1.6183 -0.2428 15 1 8.2355 0.5788 -0.8451 16 1 10.0708 0.3654 0.7255 17 6 3.4775 -1.1947 0.0008 18 17 4.2802 -2.7341 0.0013 19 7 2.1587 -1.1465 0.0005 20 1 -0.3632 0.0003 1.0277 21 1 -0.3633 0.8897 -0.5141 22 1 -0.3633 -0.8903 -0.5134 23 1 1.6499 2.1369 -0.0004 24 1 4.1358 2.1153 0.0092 25 1 6.0085 1.9088 -0.0952 26 1 8.9682 -0.4988 3.0802 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536168049.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = -48.056940 kcal Electronic energy + Delta-G solvation = -13474.431821 eV Core-core repulsion = 10963.988590 eV Total energy + Delta-G solvation = -2510.443231 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.37558 -38.15212 -37.55071 -34.47116 -33.81958 -33.09885 -30.32342 -27.77814 -24.66135 -24.26253 -22.16326 -19.57629 -18.16347 -17.78956 -16.87702 -16.75590 -15.73604 -15.31373 -15.06494 -14.88277 -14.29356 -13.95154 -13.72541 -13.38321 -13.03588 -12.98612 -12.65971 -12.36394 -12.27464 -11.94500 -11.35041 -10.92043 -10.73990 -10.63444 -10.28381 -9.53834 -8.35189 -6.50362 -0.00269 0.24920 0.93555 1.40523 1.45566 1.73116 2.42439 2.65587 3.00722 3.42613 3.82042 3.83863 4.01588 4.11497 4.35497 4.47400 4.76979 4.84200 4.97693 5.11635 5.17505 5.36030 5.44497 5.66815 6.06613 6.59531 6.77966 7.08353 7.28761 8.78749 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.009727 C = 0.008717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.450789 B = 2878.000597 C = 3211.462263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.113 3.887 3 C -0.155 4.155 4 C -0.066 4.066 5 C -0.135 4.135 6 C 0.240 3.760 7 H 0.065 0.935 8 O -0.573 6.573 9 C -0.542 4.542 10 H 0.031 0.969 11 C 0.038 3.962 12 N -0.934 5.934 13 Si 0.926 3.074 14 H -0.286 1.286 15 H -0.200 1.200 16 H -0.293 1.293 17 C 0.157 3.843 18 Cl -0.044 7.044 19 N -0.505 5.505 20 H 0.088 0.912 21 H 0.108 0.892 22 H 0.072 0.928 23 H 0.184 0.816 24 H 0.165 0.835 25 H 0.372 0.628 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.260 4.768 -7.951 15.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C -0.174 4.174 4 C -0.092 4.092 5 C -0.138 4.138 6 C 0.182 3.818 7 H 0.083 0.917 8 O -0.381 6.381 9 C -0.580 4.580 10 H 0.050 0.950 11 C -0.163 4.163 12 N -0.573 5.573 13 Si 0.750 3.250 14 H -0.213 1.213 15 H -0.122 1.122 16 H -0.219 1.219 17 C -0.006 4.006 18 Cl -0.016 7.016 19 N -0.217 5.217 20 H 0.106 0.894 21 H 0.127 0.873 22 H 0.091 0.909 23 H 0.201 0.799 24 H 0.182 0.818 25 H 0.221 0.779 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.274 3.421 -8.274 15.193 hybrid contribution 1.316 0.330 0.566 1.470 sum -10.958 3.751 -7.708 13.913 Atomic orbital electron populations 1.20800 0.85296 1.04827 1.04171 1.21924 0.98774 0.87001 0.94861 1.22415 0.93900 1.00612 1.00501 1.21721 0.95308 0.97388 0.94758 1.21522 0.99350 0.93334 0.99625 1.18482 0.84731 0.85810 0.92805 0.91738 1.86682 1.76300 1.17071 1.58077 1.21320 0.92307 1.52579 0.91752 0.95027 1.25732 1.00426 0.92263 0.97865 1.70058 1.15598 1.49935 1.21698 0.86171 0.77310 0.79153 0.82358 1.21291 1.12211 1.21945 1.21416 0.89887 0.87222 1.02074 1.98363 1.77473 1.29229 1.96487 1.66796 1.07680 1.32284 1.14975 0.89357 0.87305 0.90866 0.79854 0.81776 0.77881 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 10.17 71.24 0.72 -0.96 15 2 C 0.11 3.19 6.78 42.54 0.29 3.47 15 3 C -0.16 -3.89 9.74 22.36 0.22 -3.67 15 4 C -0.07 -2.08 9.41 22.46 0.21 -1.87 15 5 C -0.13 -5.46 5.02 -19.75 -0.10 -5.56 15 6 C 0.24 11.00 2.07 29.10 0.06 11.07 15 7 H 0.07 3.11 6.57 -2.39 -0.02 3.10 15 8 O -0.57 -23.67 9.81 -148.98 -1.46 -25.13 15 9 C -0.54 -29.84 9.33 25.60 0.24 -29.60 15 10 H 0.03 1.96 7.98 -2.91 -0.02 1.94 15 11 C 0.04 2.13 5.47 84.66 0.46 2.60 15 12 N -0.93 -57.21 13.96 21.45 0.30 -56.91 15 13 Si 0.93 43.97 26.99 68.60 1.85 45.82 15 14 H -0.29 -13.64 7.11 99.48 0.71 -12.93 15 15 H -0.20 -8.90 5.30 99.48 0.53 -8.37 15 16 H -0.29 -13.78 7.11 99.48 0.71 -13.08 15 17 C 0.16 6.44 7.27 84.70 0.62 7.06 15 18 Cl -0.04 -1.83 27.57 -2.72 -0.07 -1.91 15 19 N -0.50 -18.56 10.25 -174.85 -1.79 -20.35 15 20 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 21 H 0.11 1.21 8.08 -2.39 -0.02 1.19 15 22 H 0.07 1.37 8.14 -2.38 -0.02 1.35 15 23 H 0.18 2.77 8.06 -2.91 -0.02 2.75 15 24 H 0.16 4.21 6.53 -2.91 -0.02 4.19 15 25 H 0.37 12.78 7.38 -74.05 -0.55 12.23 15 26 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 Total: -1.00 -69.52 242.54 2.03 -67.49 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.48 Total: 8.44 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 2.72 Total: -17.46 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -1.49 Total: -77.26 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.46 Total: -25.13 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.85 Total: 45.82 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.07 Total: -1.91 kcal Total: -69.52 2.03 -67.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536168049.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.438 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds