Wall clock time and date at job start Mon Mar 30 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30296 * 126.33941 * 95.02043 * 4 2 1 6 6 N 1.28536 * 110.07203 * 179.97438 * 5 4 2 7 7 C 1.31283 * 109.85598 * 0.02562 * 6 5 4 8 8 S 1.76202 * 126.47817 * 179.97438 * 7 6 5 9 9 C 1.80997 * 100.00444 * 0.02562 * 8 7 6 10 10 C 1.50695 * 109.47413 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99532 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00277 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99680 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99986 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.46900 * 59.99837 * 14 12 10 16 16 H 1.48498 * 109.46944 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.46939 * 299.99569 * 14 12 10 18 18 N 1.36533 * 107.03201 * 359.77564 * 7 6 5 19 19 H 0.97001 * 127.13860 * 180.22534 * 18 7 6 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09008 * 109.46893 * 300.00173 * 9 8 7 28 28 H 1.09004 * 109.47014 * 59.99841 * 9 8 7 29 29 H 0.97000 * 119.99975 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 2.3763 -1.9646 1.3115 6 7 2.7585 -2.2409 2.5073 7 6 2.6776 -1.1684 3.2602 8 16 3.0918 -1.0545 4.9690 9 6 3.6128 -2.7597 5.2806 10 6 4.0239 -2.9037 6.7232 11 1 3.9761 -2.0523 7.3859 12 6 4.4618 -4.1223 7.1969 13 7 4.5204 -5.1590 6.3898 14 14 4.9720 -4.3006 8.9851 15 1 3.8223 -3.9664 9.8634 16 1 5.3994 -5.6996 9.2407 17 1 6.0993 -3.3778 9.2725 18 7 2.2161 -0.1571 2.4675 19 1 2.0512 0.7626 2.7280 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 2.7850 -3.4368 5.0696 28 1 4.4566 -3.0053 4.6357 29 1 4.8282 -6.0163 6.7231 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006782159.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:41 Heat of formation + Delta-G solvation = 27.521412 kcal Electronic energy + Delta-G solvation = -13059.275245 eV Core-core repulsion = 10722.278889 eV Total energy + Delta-G solvation = -2336.996356 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.96562 -36.78847 -35.33914 -34.51300 -31.29887 -30.55570 -28.10770 -25.61458 -24.60526 -23.48789 -21.73383 -19.74031 -18.48585 -17.58484 -17.12773 -16.71161 -16.06620 -15.26837 -14.97377 -14.54348 -14.38335 -14.00692 -13.18088 -13.07521 -12.79812 -12.71047 -12.66647 -12.31505 -12.24765 -12.01779 -11.94320 -11.70566 -11.65602 -11.11964 -10.99227 -10.67706 -8.60041 -8.32465 -6.50979 0.18565 0.59218 1.40602 1.43771 1.46786 1.56345 1.69605 2.01029 2.37413 3.01976 3.30402 3.78471 4.08147 4.11692 4.33066 4.41482 4.71742 4.83123 4.88807 4.89263 4.90835 5.01780 5.09347 5.27595 5.31273 5.52223 5.78536 6.07702 6.58046 7.18832 7.55984 8.79517 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.073123 B = 0.005344 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.824065 B = 5238.282541 C = 5459.031920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.005 4.005 3 C -0.148 4.148 4 C 0.202 3.798 5 N -0.336 5.336 6 N -0.339 5.339 7 C 0.160 3.840 8 S -0.006 6.006 9 C 0.079 3.921 10 C -0.547 4.547 11 H 0.077 0.923 12 C 0.015 3.985 13 N -0.923 5.923 14 Si 0.984 3.016 15 H -0.261 1.261 16 H -0.280 1.280 17 H -0.261 1.261 18 N -0.557 5.557 19 H 0.445 0.555 20 H 0.101 0.899 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.110 0.890 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 15.508 -9.709 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 C -0.206 4.206 4 C -0.070 4.070 5 N -0.175 5.175 6 N -0.182 5.182 7 C -0.217 4.217 8 S 0.222 5.778 9 C -0.069 4.069 10 C -0.586 4.586 11 H 0.095 0.905 12 C -0.187 4.187 13 N -0.561 5.561 14 Si 0.806 3.194 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.186 1.186 18 N -0.176 5.176 19 H 0.289 0.711 20 H 0.119 0.881 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.128 0.872 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.466 14.648 -9.456 18.595 hybrid contribution 0.147 -0.160 0.400 0.455 sum -6.319 14.488 -9.057 18.217 Atomic orbital electron populations 1.21858 0.91700 1.02326 1.04026 1.19945 0.97255 0.96185 0.89168 1.21924 1.01347 0.92701 1.04604 1.25963 1.01164 0.90982 0.88923 1.73852 1.17411 1.13737 1.12473 1.74749 1.21473 1.23528 0.98479 1.27215 1.04650 0.88205 1.01678 1.84886 1.80697 1.20691 0.91480 1.20898 0.98237 0.87607 1.00181 1.20948 1.46815 0.97339 0.93542 0.90470 1.26030 0.94452 0.94593 1.03602 1.70125 1.46034 1.01818 1.38095 0.85225 0.79282 0.77577 0.77338 1.18580 1.20522 1.18571 1.44055 1.51935 1.13225 1.08336 0.71124 0.88060 0.92261 0.93636 0.87189 0.91615 0.92733 0.88090 0.96310 0.96303 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.18 71.98 0.66 -1.41 15 2 C 0.00 -0.08 3.39 -11.54 -0.04 -0.12 15 3 C -0.15 -1.71 8.96 71.98 0.65 -1.07 15 4 C 0.20 6.08 7.02 137.64 0.97 7.04 15 5 N -0.34 -13.94 12.18 -49.52 -0.60 -14.54 15 6 N -0.34 -16.24 11.60 -56.85 -0.66 -16.90 15 7 C 0.16 6.56 8.37 179.55 1.50 8.07 15 8 S -0.01 -0.26 22.23 -56.49 -1.26 -1.52 15 9 C 0.08 4.39 4.99 71.23 0.36 4.75 15 10 C -0.55 -30.85 9.13 25.60 0.23 -30.62 15 11 H 0.08 4.09 7.71 -2.91 -0.02 4.06 15 12 C 0.02 0.85 5.46 84.66 0.46 1.31 15 13 N -0.92 -56.11 13.29 21.45 0.28 -55.82 15 14 Si 0.98 43.06 29.54 68.60 2.03 45.08 15 15 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 16 H -0.28 -11.98 7.11 99.48 0.71 -11.28 15 17 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 18 N -0.56 -16.42 6.07 -185.33 -1.12 -17.54 15 19 H 0.44 9.08 8.32 -92.71 -0.77 8.31 15 20 H 0.10 0.87 8.14 -2.39 -0.02 0.85 15 21 H 0.06 0.84 8.14 -2.39 -0.02 0.82 15 22 H 0.04 0.86 8.14 -2.38 -0.02 0.84 15 23 H 0.11 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.06 0.63 7.54 -2.39 -0.02 0.61 15 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 15 26 H 0.10 0.66 8.14 -2.39 -0.02 0.64 15 27 H 0.02 1.13 8.14 -2.39 -0.02 1.11 15 28 H 0.02 1.14 8.14 -2.39 -0.02 1.12 15 29 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 Total: -1.00 -73.14 269.72 3.84 -69.30 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 0.38 Total: 4.00 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 4.79 Total: -12.05 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -2.10 Total: -104.81 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -1.26 Total: -1.52 kcal Total: -73.14 3.84 -69.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006782159.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.821 kcal (2) G-P(sol) polarization free energy of solvation -73.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds