Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47490 * 2 1 4 4 H 1.09010 * 109.46942 * 54.52620 * 3 2 1 5 5 C 1.50696 * 109.47737 * 174.53175 * 3 2 1 6 6 H 1.07995 * 120.00703 * 120.00026 * 5 3 2 7 7 C 1.37882 * 119.99575 * 299.99535 * 5 3 2 8 8 N 1.31518 * 119.99827 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00104 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46864 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47027 * 120.00046 * 9 7 5 12 12 H 1.48495 * 109.47388 * 240.00654 * 9 7 5 13 13 S 1.81004 * 109.47081 * 294.53312 * 3 2 1 14 14 C 1.76194 * 100.00227 * 172.58491 * 13 3 2 15 15 N 1.31289 * 126.48492 * 354.93874 * 14 13 3 16 16 N 1.28527 * 109.85717 * 179.97438 * 15 14 13 17 17 C 1.30299 * 110.07942 * 359.71353 * 16 15 14 18 18 N 1.36535 * 126.48642 * 174.91366 * 14 13 3 19 19 C 1.46502 * 127.14332 * 0.02562 * 18 14 13 20 20 H 1.08999 * 109.47066 * 175.28121 * 1 2 3 21 21 H 1.09000 * 109.47138 * 295.27910 * 1 2 3 22 22 H 1.08994 * 109.46971 * 55.28069 * 1 2 3 23 23 H 1.08998 * 109.47324 * 240.00152 * 2 1 3 24 24 H 1.08999 * 109.47471 * 119.99616 * 2 1 3 25 25 H 0.97005 * 119.99337 * 179.97438 * 8 7 5 26 26 H 1.07994 * 126.34574 * 180.31277 * 17 16 15 27 27 H 1.08997 * 109.47056 * 89.99548 * 19 18 14 28 28 H 1.09006 * 109.47149 * 330.00647 * 19 18 14 29 29 H 1.08991 * 109.47564 * 210.00572 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5989 1.9839 0.8370 5 6 3.5409 1.4447 0.1354 6 1 4.1523 1.8871 -0.6372 7 6 4.1337 0.8819 1.2458 8 7 3.3893 0.3427 2.1864 9 14 5.9942 0.8839 1.4134 10 1 6.5972 1.5458 0.2287 11 1 6.3796 1.6230 2.6424 12 1 6.4847 -0.5149 1.5025 13 16 1.5732 2.2475 -1.5525 14 6 2.0675 3.9016 -1.2002 15 7 2.5295 4.3515 -0.0566 16 7 2.7909 5.6061 -0.1546 17 6 2.5197 6.0269 -1.3576 18 7 2.0432 4.9579 -2.0650 19 6 1.6040 4.9469 -3.4626 20 1 -0.3633 -1.0242 -0.0845 21 1 -0.3633 0.4388 0.9292 22 1 -0.3633 0.5853 -0.8447 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8064 -0.0536 2.9674 26 1 2.6454 7.0339 -1.7269 27 1 0.5375 5.1670 -3.5100 28 1 1.7916 3.9639 -3.8947 29 1 2.1560 5.7014 -4.0229 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036679471.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = 70.357352 kcal Electronic energy + Delta-G solvation = -13734.433761 eV Core-core repulsion = 11399.294911 eV Total energy + Delta-G solvation = -2335.138850 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.18797 -34.77590 -34.37842 -31.55595 -30.06210 -27.47387 -27.28343 -23.21112 -22.16091 -21.76607 -20.16641 -17.33632 -16.48121 -15.79087 -15.56800 -14.95309 -14.54777 -13.97420 -13.21871 -12.96643 -12.85169 -12.19872 -12.00840 -11.35475 -11.25185 -10.86849 -10.80106 -10.41400 -10.14945 -9.90955 -9.80981 -9.76920 -9.45288 -9.14715 -8.99470 -8.32657 -6.82682 -5.99156 -4.07773 1.99048 2.24181 3.09346 3.33739 3.41110 3.42365 3.51221 3.54394 4.47460 4.75787 4.94320 5.13940 5.29973 5.40134 5.80289 6.09275 6.12906 6.20625 6.36678 6.53657 6.79845 6.95068 6.98547 7.19266 7.47380 7.70849 7.90537 8.16372 8.87920 9.31309 9.54828 11.03648 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.011334 C = 0.008638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.120110 B = 2469.816584 C = 3240.656689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C 0.105 3.895 4 H 0.064 0.936 5 C -0.498 4.498 6 H 0.060 0.940 7 C 0.071 3.929 8 N -0.889 5.889 9 Si 0.898 3.102 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.284 1.284 13 S -0.084 6.084 14 C 0.190 3.810 15 N -0.262 5.262 16 N -0.295 5.295 17 C 0.128 3.872 18 N -0.483 5.483 19 C 0.080 3.920 20 H 0.039 0.961 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.115 0.885 25 H 0.262 0.738 26 H 0.212 0.788 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 5.487 -10.437 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.022 4.022 4 H 0.082 0.918 5 C -0.537 4.537 6 H 0.078 0.922 7 C -0.132 4.132 8 N -0.528 5.528 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.210 1.210 13 S 0.146 5.854 14 C -0.184 4.184 15 N -0.105 5.105 16 N -0.135 5.135 17 C -0.162 4.162 18 N -0.180 5.180 19 C -0.064 4.064 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.133 0.867 25 H 0.072 0.928 26 H 0.229 0.771 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.864 4.968 -9.804 12.019 hybrid contribution 1.206 0.734 -0.242 1.433 sum -3.658 5.702 -10.047 12.117 Atomic orbital electron populations 1.21932 0.98385 0.99760 1.00992 1.21568 0.92410 0.97252 1.03745 1.21182 0.99957 0.93959 0.87142 0.91789 1.21057 0.89051 1.37864 1.05775 0.92163 1.24850 0.98273 0.94865 0.95217 1.69836 1.34862 1.38700 1.09421 0.86421 0.85339 0.77377 0.78240 1.19933 1.20831 1.21034 1.84754 1.75917 0.91687 1.33019 1.26981 1.05192 0.96487 0.89716 1.75006 1.15831 1.01738 1.17935 1.73998 1.18207 1.05273 1.15994 1.26452 1.04222 0.94817 0.90670 1.46595 1.50592 1.08384 1.12390 1.21967 1.00963 1.04979 0.78484 0.94191 0.93216 0.93581 0.93868 0.86713 0.92781 0.77146 0.90479 0.89095 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.82 37.16 0.36 -2.55 15 2 C -0.11 -2.49 5.24 -26.73 -0.14 -2.63 15 3 C 0.11 2.62 1.67 -27.89 -0.05 2.57 15 4 H 0.06 1.79 8.07 -51.91 -0.42 1.37 15 5 C -0.50 -13.76 7.76 -34.44 -0.27 -14.03 15 6 H 0.06 1.73 7.71 -52.49 -0.40 1.33 15 7 C 0.07 1.98 5.29 -17.82 -0.09 1.88 15 8 N -0.89 -25.17 11.29 55.43 0.63 -24.54 15 9 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 15 10 H -0.27 -6.83 7.11 56.52 0.40 -6.42 15 11 H -0.28 -7.04 7.11 56.52 0.40 -6.63 15 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 13 S -0.08 -1.74 19.92 -107.50 -2.14 -3.88 15 14 C 0.19 4.09 7.82 -88.34 -0.69 3.40 15 15 N -0.26 -6.49 11.07 30.68 0.34 -6.15 15 16 N -0.30 -6.47 12.17 29.90 0.36 -6.11 15 17 C 0.13 2.10 12.80 -88.95 -1.14 0.97 15 18 N -0.48 -8.02 3.21 -125.59 -0.40 -8.42 15 19 C 0.08 0.84 11.09 59.85 0.66 1.51 15 20 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.05 0.96 8.14 -51.93 -0.42 0.53 15 22 H 0.05 0.82 7.01 -51.93 -0.36 0.46 15 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.12 2.91 5.94 -51.93 -0.31 2.61 15 25 H 0.26 7.08 8.31 -40.82 -0.34 6.75 15 26 H 0.21 2.23 8.06 -52.49 -0.42 1.81 15 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 28 H 0.09 0.98 7.86 -51.93 -0.41 0.58 15 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 15 LS Contribution 263.68 15.07 3.97 3.97 Total: -1.00 -32.45 263.68 -7.19 -39.64 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -3.58 Total: -2.77 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.35 Total: -8.88 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.93 Total: -45.23 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.14 Total: -3.88 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.45 -7.19 -39.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679471.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.998 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds