Wall clock time and date at job start Mon Mar 30 2020 03:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.39661 * 120.00074 * 275.00304 * 12 2 1 14 14 C 1.38887 * 120.04636 * 359.71817 * 13 12 2 15 15 C 1.38341 * 119.94601 * 179.76648 * 14 13 12 16 16 F 1.35096 * 119.97408 * 180.22721 * 15 14 13 17 17 C 1.38480 * 120.05046 * 0.51688 * 15 14 13 18 18 C 1.38474 * 120.09686 * 359.73485 * 17 15 14 19 19 F 1.35098 * 119.97676 * 179.97438 * 18 17 15 20 20 C 1.38339 * 120.04792 * 0.02562 * 18 17 15 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 26 26 H 1.07990 * 120.02602 * 0.02562 * 14 13 12 27 27 H 1.07995 * 119.95053 * 179.71971 * 17 15 14 28 28 H 1.08005 * 120.02214 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1518 0.0060 2.3992 14 6 1.8272 1.3550 2.4613 15 6 1.9555 2.0419 3.6553 16 9 1.6356 3.3530 3.7174 17 6 2.4173 1.3881 4.7853 18 6 2.7464 0.0444 4.7243 19 9 3.1972 -0.5909 5.8281 20 6 2.6150 -0.6476 3.5337 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 2.2491 -1.6318 1.1525 26 1 1.4710 1.8663 1.5793 27 1 2.5211 1.9270 5.7154 28 1 2.8714 -1.6957 3.4867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871274.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:28 Heat of formation + Delta-G solvation = -73.563369 kcal Electronic energy + Delta-G solvation = -15105.201974 eV Core-core repulsion = 12177.689115 eV Total energy + Delta-G solvation = -2927.512858 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.71950 -48.62209 -38.79994 -35.55821 -32.84421 -30.26455 -29.60557 -27.56326 -25.36126 -22.66504 -22.22100 -20.30739 -18.09221 -17.03742 -16.34987 -15.93080 -15.62785 -15.26578 -14.97560 -14.96427 -14.66008 -13.94365 -13.78382 -12.75648 -12.66241 -12.12499 -11.68594 -11.48787 -11.42451 -11.12215 -11.04377 -10.76008 -10.39821 -10.27949 -9.50273 -9.17070 -8.61174 -8.39409 -6.94573 -6.26195 -4.35275 1.42810 1.71179 3.17383 3.24904 3.27009 3.91275 3.92863 4.24828 4.52479 4.79657 5.06998 5.28001 5.34195 5.52119 5.80398 6.26703 6.33086 6.43508 6.55785 6.60222 6.80977 6.89678 7.09713 7.29685 7.54627 7.69205 7.90995 8.11454 8.46429 8.73631 9.32444 10.79880 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.039275 B = 0.006579 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.758236 B = 4255.182833 C = 4724.858948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.262 3.738 3 H 0.044 0.956 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.708 5.708 13 C 0.288 3.712 14 C -0.248 4.248 15 C 0.174 3.826 16 F -0.138 7.138 17 C -0.278 4.278 18 C 0.172 3.828 19 F -0.141 7.141 20 C -0.264 4.264 21 H 0.015 0.985 22 H 0.031 0.969 23 H 0.092 0.908 24 H 0.266 0.734 25 H 0.396 0.604 26 H 0.145 0.855 27 H 0.134 0.866 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -0.657 9.324 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.160 3.840 3 H 0.062 0.938 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.328 5.328 13 C 0.175 3.825 14 C -0.272 4.272 15 C 0.154 3.846 16 F -0.116 7.116 17 C -0.300 4.300 18 C 0.152 3.848 19 F -0.119 7.119 20 C -0.288 4.288 21 H 0.034 0.966 22 H 0.050 0.950 23 H 0.111 0.889 24 H 0.076 0.924 25 H 0.230 0.770 26 H 0.163 0.837 27 H 0.152 0.848 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.330 -0.422 8.955 9.063 hybrid contribution 0.370 -0.669 -0.666 1.014 sum 1.700 -1.091 8.289 8.531 Atomic orbital electron populations 1.22202 0.98360 0.99831 1.00906 1.18886 0.91010 0.93647 0.80446 0.93802 1.21157 1.32588 1.13444 0.90089 0.91956 1.24869 0.94662 0.94918 0.99131 1.69861 1.35788 1.22378 1.24172 0.86411 0.79241 0.79302 0.81983 1.20481 1.20969 1.19790 1.45756 1.67354 1.12384 1.07270 1.17325 0.88446 0.90302 0.86452 1.20736 1.13655 0.94429 0.98386 1.16924 0.96514 0.77605 0.93550 1.91478 1.90206 1.32903 1.97057 1.20439 1.15301 0.94529 0.99740 1.16827 0.95990 0.89721 0.82245 1.91465 1.86569 1.82113 1.51782 1.20425 1.15307 1.01398 0.91709 0.96595 0.94999 0.88922 0.92402 0.77014 0.83709 0.84800 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.21 37.16 0.34 -3.15 15 2 C 0.26 6.04 2.25 -69.08 -0.16 5.88 15 3 H 0.04 1.11 6.47 -51.93 -0.34 0.77 15 4 C -0.53 -13.45 8.73 -34.44 -0.30 -13.75 15 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.88 -23.52 11.32 55.43 0.63 -22.90 15 8 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 15 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 12 N -0.71 -13.75 5.24 -53.31 -0.28 -14.03 15 13 C 0.29 5.20 6.63 -83.81 -0.56 4.64 15 14 C -0.25 -4.54 8.84 -39.30 -0.35 -4.89 15 15 C 0.17 2.93 7.29 -39.45 -0.29 2.65 15 16 F -0.14 -2.29 17.27 2.25 0.04 -2.25 15 17 C -0.28 -4.28 10.00 -39.41 -0.39 -4.67 15 18 C 0.17 2.69 7.29 -39.46 -0.29 2.40 15 19 F -0.14 -2.10 17.27 2.25 0.04 -2.06 15 20 C -0.26 -4.22 9.87 -39.31 -0.39 -4.61 15 21 H 0.01 0.32 7.74 -51.93 -0.40 -0.08 15 22 H 0.03 0.70 8.14 -51.93 -0.42 0.27 15 23 H 0.09 2.30 6.07 -51.93 -0.32 1.99 15 24 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 25 H 0.40 7.04 8.55 -40.82 -0.35 6.69 15 26 H 0.15 2.83 6.14 -52.49 -0.32 2.51 15 27 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 28 H 0.13 1.86 8.06 -52.48 -0.42 1.44 15 LS Contribution 252.66 15.07 3.81 3.81 Total: -1.00 -25.26 252.66 -5.79 -31.05 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -2.53 Total: 5.29 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.47 Total: -13.86 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.35 Total: -36.93 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.08 Total: -4.32 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -25.26 -5.79 -31.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871274.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.511 kcal (2) G-P(sol) polarization free energy of solvation -25.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds