Wall clock time and date at job start Mon Mar 30 2020 03:11:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47533 * 2 1
4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3
5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1
6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1
7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2
9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4
10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4
11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4
12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3
13 13 C 1.39661 * 120.00074 * 275.00304 * 12 2 1
14 14 C 1.38887 * 120.04636 * 359.71817 * 13 12 2
15 15 C 1.38341 * 119.94601 * 179.76648 * 14 13 12
16 16 F 1.35096 * 119.97408 * 180.22721 * 15 14 13
17 17 C 1.38480 * 120.05046 * 0.51688 * 15 14 13
18 18 C 1.38474 * 120.09686 * 359.73485 * 17 15 14
19 19 F 1.35098 * 119.97676 * 179.97438 * 18 17 15
20 20 C 1.38339 * 120.04792 * 0.02562 * 18 17 15
21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3
22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3
24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4
25 25 H 0.97001 * 119.99547 * 95.00125 * 12 2 1
26 26 H 1.07990 * 120.02602 * 0.02562 * 14 13 12
27 27 H 1.07995 * 119.95053 * 179.71971 * 17 15 14
28 28 H 1.08005 * 120.02214 * 180.02562 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7103 -1.2306
5 1 2.6533 -1.5884 -1.1315
6 6 1.6992 -0.2392 -2.4828
7 7 0.9434 0.8302 -2.6034
8 14 2.3213 -1.1201 -4.0080
9 1 1.3426 -2.1615 -4.4120
10 1 2.4865 -0.1411 -5.1123
11 1 3.6292 -1.7581 -3.7123
12 7 2.0184 -0.6906 1.1961
13 6 2.1518 0.0060 2.3992
14 6 1.8272 1.3550 2.4613
15 6 1.9555 2.0419 3.6553
16 9 1.6356 3.3530 3.7174
17 6 2.4173 1.3881 4.7853
18 6 2.7464 0.0444 4.7243
19 9 3.1972 -0.5909 5.8281
20 6 2.6150 -0.6476 3.5337
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5139 -0.8900
24 1 0.7093 1.1619 -3.4844
25 1 2.2491 -1.6318 1.1525
26 1 1.4710 1.8663 1.5793
27 1 2.5211 1.9270 5.7154
28 1 2.8714 -1.6957 3.4867
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000037871274.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:28
Heat of formation + Delta-G solvation = -86.667595 kcal
Electronic energy + Delta-G solvation = -15105.770216 eV
Core-core repulsion = 12177.689115 eV
Total energy + Delta-G solvation = -2928.081100 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-49.96496 -49.93528 -40.20854 -37.17643 -34.61249 -31.84234 -31.03067 -29.09366
-27.28847 -24.10531 -23.63959 -21.95199 -19.56500 -18.59016 -17.87487 -17.25962
-16.93066 -16.88765 -16.49169 -16.24862 -16.15288 -15.45645 -15.21598 -14.41300
-14.33173 -13.56559 -13.41882 -12.99501 -12.83993 -12.77132 -12.70032 -12.44358
-12.23359 -12.03243 -11.13108 -10.90821 -10.52052 -9.71923 -8.42255 -8.19167
-6.35279 0.09185 0.38235 1.43355 1.45034 1.54292 2.33332 2.57233
2.57696 3.10839 3.14597 3.46852 4.01231 4.07296 4.16772 4.41912
4.71011 4.92066 4.96569 5.03770 5.07335 5.14965 5.21712 5.39030
5.59975 5.78480 5.91096 6.06908 6.41820 6.73270 7.06035 7.36691
8.85499
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.039275 B = 0.006579 C = 0.005925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 712.758236 B = 4255.182833 C = 4724.858948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.271 3.729
3 H 0.016 0.984
4 C -0.548 4.548
5 H 0.066 0.934
6 C 0.021 3.979
7 N -0.913 5.913
8 Si 0.965 3.035
9 H -0.274 1.274
10 H -0.285 1.285
11 H -0.268 1.268
12 N -0.713 5.713
13 C 0.274 3.726
14 C -0.264 4.264
15 C 0.170 3.830
16 F -0.138 7.138
17 C -0.262 4.262
18 C 0.175 3.825
19 F -0.132 7.132
20 C -0.251 4.251
21 H 0.025 0.975
22 H 0.033 0.967
23 H 0.067 0.933
24 H 0.266 0.734
25 H 0.404 0.596
26 H 0.123 0.877
27 H 0.160 0.840
28 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.208 -1.592 10.490 10.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.167 3.833
3 H 0.034 0.966
4 C -0.586 4.586
5 H 0.084 0.916
6 C -0.180 4.180
7 N -0.551 5.551
8 Si 0.790 3.210
9 H -0.200 1.200
10 H -0.211 1.211
11 H -0.192 1.192
12 N -0.335 5.335
13 C 0.163 3.837
14 C -0.289 4.289
15 C 0.150 3.850
16 F -0.117 7.117
17 C -0.284 4.284
18 C 0.155 3.845
19 F -0.110 7.110
20 C -0.275 4.275
21 H 0.044 0.956
22 H 0.052 0.948
23 H 0.086 0.914
24 H 0.075 0.925
25 H 0.239 0.761
26 H 0.141 0.859
27 H 0.178 0.822
28 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges 2.052 -1.361 10.164 10.458
hybrid contribution 0.170 -0.335 -0.891 0.967
sum 2.221 -1.696 9.272 9.684
Atomic orbital electron populations
1.22022 0.98329 0.99582 1.00140 1.18503 0.90960 0.92333 0.81457
0.96638 1.21509 1.32461 1.13563 0.91083 0.91630 1.25645 0.94890
0.95568 1.01903 1.69988 1.36836 1.23625 1.24653 0.85447 0.78836
0.78158 0.78525 1.19998 1.21076 1.19244 1.45368 1.68678 1.12627
1.06813 1.17395 0.89471 0.90207 0.86596 1.20694 1.14745 0.94969
0.98449 1.16939 0.96890 0.77652 0.93531 1.91477 1.90252 1.32905
1.97040 1.20680 1.13139 0.94535 1.00018 1.16799 0.95656 0.89728
0.82298 1.91496 1.86360 1.81942 1.51244 1.20583 1.13660 1.02370
0.90925 0.95574 0.94799 0.91382 0.92479 0.76083 0.85868 0.82230
0.82847
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -6.52 9.21 71.98 0.66 -5.86 15
2 C 0.27 12.69 2.25 44.25 0.10 12.79 15
3 H 0.02 0.83 6.47 -2.39 -0.02 0.81 15
4 C -0.55 -27.68 8.73 25.60 0.22 -27.46 15
5 H 0.07 3.19 7.74 -2.91 -0.02 3.17 15
6 C 0.02 1.05 5.30 84.65 0.45 1.50 15
7 N -0.91 -49.43 11.32 21.45 0.24 -49.18 15
8 Si 0.96 40.86 29.54 68.60 2.03 42.89 15
9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15
10 H -0.29 -12.02 7.11 99.48 0.71 -11.32 15
11 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15
12 N -0.71 -27.41 5.24 -322.56 -1.69 -29.10 15
13 C 0.27 9.65 6.63 38.20 0.25 9.90 15
14 C -0.26 -9.67 8.84 22.45 0.20 -9.47 15
15 C 0.17 5.50 7.29 22.35 0.16 5.66 15
16 F -0.14 -4.46 17.27 44.97 0.78 -3.68 15
17 C -0.26 -7.31 10.00 22.38 0.22 -7.09 15
18 C 0.18 4.92 7.29 22.35 0.16 5.08 15
19 F -0.13 -3.46 17.27 44.97 0.78 -2.68 15
20 C -0.25 -7.41 9.87 22.45 0.22 -7.19 15
21 H 0.03 1.09 7.74 -2.39 -0.02 1.07 15
22 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15
23 H 0.07 3.47 6.07 -2.38 -0.01 3.46 15
24 H 0.27 13.73 8.31 -92.71 -0.77 12.96 15
25 H 0.40 13.98 8.55 -92.71 -0.79 13.19 15
26 H 0.12 5.03 6.14 -2.92 -0.02 5.01 15
27 H 0.16 3.64 8.06 -2.91 -0.02 3.62 15
28 H 0.15 3.84 8.06 -2.91 -0.02 3.81 15
Total: -1.00 -52.80 252.66 5.19 -47.60
By element:
Atomic # 1 Polarization: 15.89 SS G_CDS: 0.40 Total: 16.29 kcal
Atomic # 6 Polarization: -24.79 SS G_CDS: 2.66 Total: -22.13 kcal
Atomic # 7 Polarization: -76.84 SS G_CDS: -1.45 Total: -78.29 kcal
Atomic # 9 Polarization: -7.92 SS G_CDS: 1.55 Total: -6.37 kcal
Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal
Total: -52.80 5.19 -47.60 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037871274.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.064 kcal
(2) G-P(sol) polarization free energy of solvation -52.796 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.860 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.603 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds