Wall clock time and date at job start Mon Mar 30 2020 03:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.39661 * 120.00074 * 275.00304 * 12 2 1 14 14 C 1.38887 * 120.04636 * 359.71817 * 13 12 2 15 15 C 1.38341 * 119.94601 * 179.76648 * 14 13 12 16 16 F 1.35096 * 119.97408 * 180.22721 * 15 14 13 17 17 C 1.38480 * 120.05046 * 0.51688 * 15 14 13 18 18 C 1.38474 * 120.09686 * 359.73485 * 17 15 14 19 19 F 1.35098 * 119.97676 * 179.97438 * 18 17 15 20 20 C 1.38339 * 120.04792 * 0.02562 * 18 17 15 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 26 26 H 1.07990 * 120.02602 * 0.02562 * 14 13 12 27 27 H 1.07995 * 119.95053 * 179.71971 * 17 15 14 28 28 H 1.08005 * 120.02214 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1518 0.0060 2.3992 14 6 1.8272 1.3550 2.4613 15 6 1.9555 2.0419 3.6553 16 9 1.6356 3.3530 3.7174 17 6 2.4173 1.3881 4.7853 18 6 2.7464 0.0444 4.7243 19 9 3.1972 -0.5909 5.8281 20 6 2.6150 -0.6476 3.5337 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 2.2491 -1.6318 1.1525 26 1 1.4710 1.8663 1.5793 27 1 2.5211 1.9270 5.7154 28 1 2.8714 -1.6957 3.4867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871274.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:28 Heat of formation + Delta-G solvation = -86.667595 kcal Electronic energy + Delta-G solvation = -15105.770216 eV Core-core repulsion = 12177.689115 eV Total energy + Delta-G solvation = -2928.081100 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.96496 -49.93528 -40.20854 -37.17643 -34.61249 -31.84234 -31.03067 -29.09366 -27.28847 -24.10531 -23.63959 -21.95199 -19.56500 -18.59016 -17.87487 -17.25962 -16.93066 -16.88765 -16.49169 -16.24862 -16.15288 -15.45645 -15.21598 -14.41300 -14.33173 -13.56559 -13.41882 -12.99501 -12.83993 -12.77132 -12.70032 -12.44358 -12.23359 -12.03243 -11.13108 -10.90821 -10.52052 -9.71923 -8.42255 -8.19167 -6.35279 0.09185 0.38235 1.43355 1.45034 1.54292 2.33332 2.57233 2.57696 3.10839 3.14597 3.46852 4.01231 4.07296 4.16772 4.41912 4.71011 4.92066 4.96569 5.03770 5.07335 5.14965 5.21712 5.39030 5.59975 5.78480 5.91096 6.06908 6.41820 6.73270 7.06035 7.36691 8.85499 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.039275 B = 0.006579 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.758236 B = 4255.182833 C = 4724.858948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.271 3.729 3 H 0.016 0.984 4 C -0.548 4.548 5 H 0.066 0.934 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.965 3.035 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.713 5.713 13 C 0.274 3.726 14 C -0.264 4.264 15 C 0.170 3.830 16 F -0.138 7.138 17 C -0.262 4.262 18 C 0.175 3.825 19 F -0.132 7.132 20 C -0.251 4.251 21 H 0.025 0.975 22 H 0.033 0.967 23 H 0.067 0.933 24 H 0.266 0.734 25 H 0.404 0.596 26 H 0.123 0.877 27 H 0.160 0.840 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -1.592 10.490 10.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.167 3.833 3 H 0.034 0.966 4 C -0.586 4.586 5 H 0.084 0.916 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.790 3.210 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.192 1.192 12 N -0.335 5.335 13 C 0.163 3.837 14 C -0.289 4.289 15 C 0.150 3.850 16 F -0.117 7.117 17 C -0.284 4.284 18 C 0.155 3.845 19 F -0.110 7.110 20 C -0.275 4.275 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.239 0.761 26 H 0.141 0.859 27 H 0.178 0.822 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.052 -1.361 10.164 10.458 hybrid contribution 0.170 -0.335 -0.891 0.967 sum 2.221 -1.696 9.272 9.684 Atomic orbital electron populations 1.22022 0.98329 0.99582 1.00140 1.18503 0.90960 0.92333 0.81457 0.96638 1.21509 1.32461 1.13563 0.91083 0.91630 1.25645 0.94890 0.95568 1.01903 1.69988 1.36836 1.23625 1.24653 0.85447 0.78836 0.78158 0.78525 1.19998 1.21076 1.19244 1.45368 1.68678 1.12627 1.06813 1.17395 0.89471 0.90207 0.86596 1.20694 1.14745 0.94969 0.98449 1.16939 0.96890 0.77652 0.93531 1.91477 1.90252 1.32905 1.97040 1.20680 1.13139 0.94535 1.00018 1.16799 0.95656 0.89728 0.82298 1.91496 1.86360 1.81942 1.51244 1.20583 1.13660 1.02370 0.90925 0.95574 0.94799 0.91382 0.92479 0.76083 0.85868 0.82230 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.52 9.21 71.98 0.66 -5.86 15 2 C 0.27 12.69 2.25 44.25 0.10 12.79 15 3 H 0.02 0.83 6.47 -2.39 -0.02 0.81 15 4 C -0.55 -27.68 8.73 25.60 0.22 -27.46 15 5 H 0.07 3.19 7.74 -2.91 -0.02 3.17 15 6 C 0.02 1.05 5.30 84.65 0.45 1.50 15 7 N -0.91 -49.43 11.32 21.45 0.24 -49.18 15 8 Si 0.96 40.86 29.54 68.60 2.03 42.89 15 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 10 H -0.29 -12.02 7.11 99.48 0.71 -11.32 15 11 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 12 N -0.71 -27.41 5.24 -322.56 -1.69 -29.10 15 13 C 0.27 9.65 6.63 38.20 0.25 9.90 15 14 C -0.26 -9.67 8.84 22.45 0.20 -9.47 15 15 C 0.17 5.50 7.29 22.35 0.16 5.66 15 16 F -0.14 -4.46 17.27 44.97 0.78 -3.68 15 17 C -0.26 -7.31 10.00 22.38 0.22 -7.09 15 18 C 0.18 4.92 7.29 22.35 0.16 5.08 15 19 F -0.13 -3.46 17.27 44.97 0.78 -2.68 15 20 C -0.25 -7.41 9.87 22.45 0.22 -7.19 15 21 H 0.03 1.09 7.74 -2.39 -0.02 1.07 15 22 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.07 3.47 6.07 -2.38 -0.01 3.46 15 24 H 0.27 13.73 8.31 -92.71 -0.77 12.96 15 25 H 0.40 13.98 8.55 -92.71 -0.79 13.19 15 26 H 0.12 5.03 6.14 -2.92 -0.02 5.01 15 27 H 0.16 3.64 8.06 -2.91 -0.02 3.62 15 28 H 0.15 3.84 8.06 -2.91 -0.02 3.81 15 Total: -1.00 -52.80 252.66 5.19 -47.60 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.40 Total: 16.29 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 2.66 Total: -22.13 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.45 Total: -78.29 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 1.55 Total: -6.37 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -52.80 5.19 -47.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871274.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.064 kcal (2) G-P(sol) polarization free energy of solvation -52.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds