Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.40027 * 110.99871 * 275.00137 * 12 2 1 14 14 C 1.38990 * 120.08337 * 299.72356 * 13 12 2 15 15 F 1.35095 * 120.04770 * 0.02562 * 14 13 12 16 16 C 1.38336 * 119.90776 * 179.77196 * 14 13 12 17 17 C 1.38277 * 120.08652 * 0.50136 * 16 14 13 18 18 C 1.38271 * 120.17317 * 359.75672 * 17 16 14 19 19 C 1.38328 * 120.08504 * 359.97438 * 18 17 16 20 20 F 1.35096 * 120.04695 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 26 26 H 1.08002 * 119.95535 * 180.22964 * 16 14 13 27 27 H 1.07999 * 119.91164 * 179.76383 * 17 16 14 28 28 H 1.07997 * 119.96179 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0795 0.1799 2.2932 14 6 2.8871 1.3099 2.2398 15 9 3.6156 1.5688 1.1320 16 6 2.9398 2.1717 3.3205 17 6 2.1984 1.9048 4.4568 18 6 1.3980 0.7789 4.5158 19 6 1.3356 -0.0849 3.4371 20 9 0.5529 -1.1844 3.4954 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7088 1.1611 -3.4845 25 1 2.9173 -1.1204 1.0288 26 1 3.5642 3.0519 3.2784 27 1 2.2446 2.5776 5.3004 28 1 0.8207 0.5735 5.4051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871344.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = -62.463483 kcal Electronic energy + Delta-G solvation = -15683.960282 eV Core-core repulsion = 12756.928751 eV Total energy + Delta-G solvation = -2927.031531 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.53413 -48.41329 -38.67246 -35.76127 -32.72747 -30.01963 -29.79172 -27.18968 -25.15349 -22.57264 -22.08557 -20.05492 -17.77064 -17.00190 -16.78001 -15.79743 -15.42239 -15.18070 -14.83135 -14.73292 -14.22952 -13.97185 -13.61154 -12.59933 -12.41196 -11.90887 -11.72643 -11.46495 -11.39937 -10.94466 -10.81864 -10.48972 -10.27374 -10.11396 -8.92593 -8.55307 -8.47228 -8.35167 -7.68386 -6.05350 -4.12304 1.24755 1.29947 3.31108 3.35025 3.37876 3.63112 4.23418 4.37869 4.74672 4.84896 4.91109 5.18181 5.28086 5.32011 5.90957 6.09545 6.23954 6.28734 6.37397 6.78358 6.96400 7.09267 7.18415 7.44596 7.73662 7.79027 8.09612 8.23666 8.53101 8.92651 9.52747 11.01259 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.039412 B = 0.008361 C = 0.007583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.271582 B = 3347.960311 C = 3691.638168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.018 0.982 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.644 5.644 13 C 0.051 3.949 14 C 0.093 3.907 15 F -0.121 7.121 16 C -0.165 4.165 17 C -0.082 4.082 18 C -0.169 4.169 19 C 0.138 3.862 20 F -0.123 7.123 21 H 0.034 0.966 22 H 0.002 0.998 23 H 0.085 0.915 24 H 0.263 0.737 25 H 0.350 0.650 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 2.324 12.281 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.106 3.894 3 H 0.036 0.964 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.728 3.272 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.201 1.201 12 N -0.277 5.277 13 C -0.048 4.048 14 C 0.070 3.930 15 F -0.100 7.100 16 C -0.185 4.185 17 C -0.100 4.100 18 C -0.188 4.188 19 C 0.118 3.882 20 F -0.101 7.101 21 H 0.053 0.947 22 H 0.021 0.979 23 H 0.103 0.897 24 H 0.073 0.927 25 H 0.174 0.826 26 H 0.153 0.847 27 H 0.154 0.846 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.796 2.127 12.199 12.512 hybrid contribution 0.988 -0.007 -1.320 1.649 sum 2.784 2.120 10.878 11.427 Atomic orbital electron populations 1.21733 0.97490 0.99634 0.99523 1.19368 0.92839 0.93138 0.84051 0.96420 1.21124 1.31916 1.12685 0.90171 0.92090 1.24894 0.94920 0.94957 0.99038 1.69887 1.36321 1.22746 1.23725 0.86522 0.79109 0.79725 0.81832 1.21234 1.20237 1.20129 1.58455 1.32606 1.31312 1.05368 1.19197 0.97093 0.93935 0.94548 1.18467 0.94031 0.96299 0.84172 1.91560 1.74576 1.93503 1.50317 1.21129 1.03342 1.00657 0.93381 1.20676 0.95444 0.96448 0.97425 1.21079 1.03153 0.96013 0.98600 1.17390 0.92150 0.85146 0.93556 1.91500 1.71530 1.50617 1.96469 0.94684 0.97863 0.89675 0.92744 0.82596 0.84749 0.84591 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.18 37.16 0.34 -2.93 15 2 C 0.21 5.52 2.26 -68.87 -0.16 5.36 15 3 H 0.02 0.51 5.85 -51.92 -0.30 0.21 15 4 C -0.52 -14.51 8.59 -34.44 -0.30 -14.81 15 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 15 6 C 0.06 1.79 5.30 -17.82 -0.09 1.70 15 7 N -0.89 -25.69 11.32 55.43 0.63 -25.06 15 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 15 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 15 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 12 N -0.64 -14.59 6.05 -52.89 -0.32 -14.91 15 13 C 0.05 1.01 5.38 -83.55 -0.45 0.56 15 14 C 0.09 1.71 6.76 -39.27 -0.27 1.45 15 15 F -0.12 -2.54 15.33 2.25 0.03 -2.50 15 16 C -0.17 -2.36 10.02 -39.53 -0.40 -2.75 15 17 C -0.08 -0.98 10.04 -39.55 -0.40 -1.38 15 18 C -0.17 -2.27 10.02 -39.54 -0.40 -2.67 15 19 C 0.14 2.42 7.31 -39.27 -0.29 2.13 15 20 F -0.12 -2.29 17.08 2.25 0.04 -2.26 15 21 H 0.03 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.00 0.06 8.03 -51.93 -0.42 -0.36 15 23 H 0.08 2.37 6.07 -51.93 -0.32 2.06 15 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 25 H 0.35 7.64 8.26 -39.29 -0.32 7.32 15 26 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 27 H 0.14 1.12 8.06 -52.49 -0.42 0.70 15 28 H 0.14 1.44 8.06 -52.49 -0.42 1.01 15 LS Contribution 251.94 15.07 3.80 3.80 Total: -1.00 -29.87 251.94 -5.83 -35.70 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -2.59 Total: 2.11 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.40 Total: -13.33 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.31 Total: -39.97 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.07 Total: -4.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.87 -5.83 -35.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871344.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.766 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds