Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.40027 * 110.99871 * 275.00137 * 12 2 1 14 14 C 1.38990 * 120.08337 * 299.72356 * 13 12 2 15 15 F 1.35095 * 120.04770 * 0.02562 * 14 13 12 16 16 C 1.38336 * 119.90776 * 179.77196 * 14 13 12 17 17 C 1.38277 * 120.08652 * 0.50136 * 16 14 13 18 18 C 1.38271 * 120.17317 * 359.75672 * 17 16 14 19 19 C 1.38328 * 120.08504 * 359.97438 * 18 17 16 20 20 F 1.35096 * 120.04695 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 26 26 H 1.08002 * 119.95535 * 180.22964 * 16 14 13 27 27 H 1.07999 * 119.91164 * 179.76383 * 17 16 14 28 28 H 1.07997 * 119.96179 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0795 0.1799 2.2932 14 6 2.8871 1.3099 2.2398 15 9 3.6156 1.5688 1.1320 16 6 2.9398 2.1717 3.3205 17 6 2.1984 1.9048 4.4568 18 6 1.3980 0.7789 4.5158 19 6 1.3356 -0.0849 3.4371 20 9 0.5529 -1.1844 3.4954 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7088 1.1611 -3.4845 25 1 2.9173 -1.1204 1.0288 26 1 3.5642 3.0519 3.2784 27 1 2.2446 2.5776 5.3004 28 1 0.8207 0.5735 5.4051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871344.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = -81.354909 kcal Electronic energy + Delta-G solvation = -15684.779476 eV Core-core repulsion = 12756.928751 eV Total energy + Delta-G solvation = -2927.850725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.01058 -49.78170 -39.99521 -37.47349 -34.67456 -31.57096 -31.21438 -28.84192 -27.28992 -23.90536 -23.43962 -21.94106 -19.18685 -18.82321 -18.15461 -17.25376 -17.13932 -16.58736 -16.52740 -16.25970 -15.74667 -15.40519 -15.23007 -14.53663 -13.72051 -13.59348 -13.21007 -13.03607 -12.82055 -12.79585 -12.62093 -12.39284 -12.30611 -12.09409 -11.02798 -10.64980 -9.73700 -9.69448 -9.47630 -8.18580 -6.33449 0.01863 0.06474 1.39824 1.42517 1.50132 2.37076 2.44830 2.97639 3.09824 3.27270 3.54330 3.88570 3.99286 4.26643 4.57454 4.75460 4.94013 4.98069 5.06128 5.09049 5.12141 5.23194 5.35930 5.57830 5.70792 5.86623 6.07965 6.21568 6.66286 6.81740 7.35710 8.87658 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.039412 B = 0.008361 C = 0.007583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.271582 B = 3347.960311 C = 3691.638168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.219 3.781 3 H -0.010 1.010 4 C -0.543 4.543 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.968 3.032 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.270 1.270 12 N -0.646 5.646 13 C 0.009 3.991 14 C 0.060 3.940 15 F -0.147 7.147 16 C -0.155 4.155 17 C -0.056 4.056 18 C -0.150 4.150 19 C 0.117 3.883 20 F -0.137 7.137 21 H 0.027 0.973 22 H 0.012 0.988 23 H 0.064 0.936 24 H 0.265 0.735 25 H 0.346 0.654 26 H 0.163 0.837 27 H 0.192 0.808 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 3.080 14.229 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 H 0.008 0.992 4 C -0.581 4.581 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.792 3.208 9 H -0.206 1.206 10 H -0.196 1.196 11 H -0.195 1.195 12 N -0.278 5.278 13 C -0.089 4.089 14 C 0.038 3.962 15 F -0.125 7.125 16 C -0.174 4.174 17 C -0.073 4.073 18 C -0.169 4.169 19 C 0.096 3.904 20 F -0.115 7.115 21 H 0.047 0.953 22 H 0.031 0.969 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.169 0.831 26 H 0.181 0.819 27 H 0.210 0.790 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.071 2.883 14.175 14.613 hybrid contribution 0.907 -0.166 -1.757 1.984 sum 2.978 2.717 12.418 13.056 Atomic orbital electron populations 1.21541 0.97727 0.98849 0.98874 1.19080 0.92562 0.91776 0.85359 0.99241 1.21462 1.32250 1.12922 0.91436 0.92254 1.25745 0.94977 0.95635 1.02067 1.70013 1.37139 1.23927 1.24462 0.85467 0.78715 0.78620 0.77957 1.20573 1.19554 1.19525 1.58253 1.32518 1.32031 1.05013 1.19381 0.99877 0.94974 0.94685 1.18816 0.94951 0.97450 0.84967 1.91486 1.75306 1.93737 1.52010 1.21551 1.03201 1.00283 0.92368 1.21336 0.92419 0.95899 0.97674 1.21574 1.02411 0.94785 0.98091 1.17756 0.92417 0.85901 0.94318 1.91460 1.71952 1.51550 1.96567 0.95336 0.96859 0.91778 0.92614 0.83131 0.81935 0.79046 0.80625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.00 9.18 71.98 0.66 -5.34 15 2 C 0.22 11.89 2.26 44.17 0.10 11.99 15 3 H -0.01 -0.59 5.85 -2.38 -0.01 -0.61 15 4 C -0.54 -31.20 8.59 25.60 0.22 -30.98 15 5 H 0.06 3.33 7.62 -2.91 -0.02 3.31 15 6 C 0.02 0.87 5.30 84.66 0.45 1.32 15 7 N -0.92 -54.24 11.32 21.45 0.24 -54.00 15 8 Si 0.97 44.60 29.54 68.60 2.03 46.63 15 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 12 N -0.65 -30.46 6.05 -321.24 -1.94 -32.41 15 13 C 0.01 0.36 5.38 38.19 0.21 0.56 15 14 C 0.06 2.21 6.76 22.47 0.15 2.37 15 15 F -0.15 -6.39 15.33 44.97 0.69 -5.70 15 16 C -0.15 -3.94 10.02 22.30 0.22 -3.72 15 17 C -0.06 -1.04 10.04 22.29 0.22 -0.82 15 18 C -0.15 -3.40 10.02 22.30 0.22 -3.18 15 19 C 0.12 3.95 7.31 22.47 0.16 4.12 15 20 F -0.14 -5.06 17.08 44.97 0.77 -4.30 15 21 H 0.03 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.01 0.63 8.03 -2.39 -0.02 0.61 15 23 H 0.06 3.70 6.07 -2.39 -0.01 3.68 15 24 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 25 H 0.35 15.97 8.26 -89.70 -0.74 15.23 15 26 H 0.16 3.19 8.06 -2.91 -0.02 3.17 15 27 H 0.19 1.61 8.06 -2.91 -0.02 1.59 15 28 H 0.18 2.67 8.06 -2.91 -0.02 2.65 15 Total: -1.00 -67.83 251.94 4.85 -62.98 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.45 Total: 10.48 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 2.62 Total: -23.68 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.70 Total: -86.41 kcal Atomic # 9 Polarization: -11.45 SS G_CDS: 1.46 Total: -10.00 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -67.83 4.85 -62.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871344.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.376 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds