Wall clock time and date at job start Mon Mar 30 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 119.99889 * 2 1 4 4 H 1.48501 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47106 * 299.99515 * 3 2 1 6 6 H 1.48497 * 109.47535 * 60.00095 * 3 2 1 7 7 C 1.37877 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99311 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00211 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46730 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99694 * 270.27699 * 10 9 7 12 12 O 1.21277 * 120.00169 * 4.80417 * 11 10 9 13 13 C 1.50703 * 120.00113 * 184.80575 * 11 10 9 14 14 C 1.50697 * 109.47488 * 185.55145 * 13 11 10 15 15 O 1.20830 * 119.99965 * 0.02562 * 14 13 11 16 16 O 1.34229 * 120.00194 * 179.97438 * 14 13 11 17 17 C 1.46495 * 120.00174 * 90.00688 * 10 9 7 18 18 C 1.52997 * 117.49983 * 2.84156 * 17 10 9 19 19 C 1.53001 * 60.00192 * 252.51237 * 18 17 10 20 20 H 0.96999 * 119.99957 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.46755 * 60.01041 * 9 7 2 22 22 H 1.08994 * 109.47619 * 300.00151 * 9 7 2 23 23 H 1.09006 * 109.46598 * 305.55254 * 13 11 10 24 24 H 1.08997 * 109.46934 * 65.54642 * 13 11 10 25 25 H 0.96699 * 117.00014 * 179.97438 * 16 14 13 26 26 H 1.08996 * 115.55221 * 148.55833 * 17 10 9 27 27 H 1.09001 * 117.49631 * 0.02562 * 18 17 10 28 28 H 1.09002 * 117.49913 * 145.01993 * 18 17 10 29 29 H 1.09001 * 117.49890 * 252.50875 * 19 18 17 30 30 H 1.08999 * 117.51256 * 107.47757 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.6452 -4.1222 -1.1641 12 8 2.3239 -3.6042 -2.2125 13 6 3.5389 -5.3357 -1.1659 14 6 3.9989 -5.6187 -2.5728 15 8 3.6385 -4.9076 -3.4808 16 8 4.8099 -6.6600 -2.8171 17 6 2.6789 -4.1684 1.2719 18 6 2.0944 -3.5874 2.5609 19 6 3.5358 -3.2653 2.1614 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8881 22 1 0.6246 -2.5564 0.8919 23 1 4.4051 -5.1498 -0.5308 24 1 2.9863 -6.1943 -0.7846 25 1 5.0780 -6.8017 -3.7353 26 1 2.9140 -5.2326 1.2604 27 1 1.3554 -2.7919 2.4646 28 1 1.9445 -4.2695 3.3978 29 1 4.3342 -3.7356 2.7354 30 1 3.7456 -2.2579 1.8020 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050917709.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:15 Heat of formation + Delta-G solvation = -91.909600 kcal Electronic energy + Delta-G solvation = -15929.587221 eV Core-core repulsion = 13112.366326 eV Total energy + Delta-G solvation = -2817.220895 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.24643 -38.85008 -36.76726 -35.69954 -33.18279 -32.08794 -30.70795 -27.19776 -23.46936 -22.25841 -21.92400 -21.21401 -18.20560 -17.97082 -16.67076 -16.46349 -16.11763 -15.91008 -15.01830 -14.50874 -14.04793 -13.84724 -13.39247 -12.78904 -12.53591 -11.90551 -11.76667 -11.38966 -11.26224 -11.02262 -10.93789 -10.53362 -10.43311 -10.36772 -10.04410 -10.00212 -9.45681 -8.83761 -8.42575 -7.54897 -6.04323 -4.08209 2.45980 2.96822 3.30053 3.31311 3.38600 3.42581 3.91797 4.35235 4.45165 4.77028 5.22138 5.26970 5.29829 5.31763 5.37406 5.50154 5.57251 6.07585 6.10649 6.58322 6.64913 6.74801 7.05214 7.41894 7.52172 7.92334 8.12002 8.22265 8.35986 8.89827 9.06231 9.56483 11.03754 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.008582 C = 0.007315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.421521 B = 3261.801612 C = 3826.616041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.244 3.756 10 N -0.571 5.571 11 C 0.505 3.495 12 O -0.496 6.496 13 C -0.136 4.136 14 C 0.472 3.528 15 O -0.465 6.465 16 O -0.527 6.527 17 C 0.063 3.937 18 C -0.178 4.178 19 C -0.193 4.193 20 H 0.262 0.738 21 H 0.043 0.957 22 H 0.040 0.960 23 H 0.126 0.874 24 H 0.126 0.874 25 H 0.407 0.593 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 -12.468 3.544 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.126 3.874 10 N -0.303 5.303 11 C 0.289 3.711 12 O -0.370 6.370 13 C -0.176 4.176 14 C 0.311 3.689 15 O -0.348 6.348 16 O -0.340 6.340 17 C -0.043 4.043 18 C -0.215 4.215 19 C -0.231 4.231 20 H 0.072 0.928 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.144 0.856 24 H 0.143 0.857 25 H 0.266 0.734 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.130 -11.760 3.082 14.093 hybrid contribution 0.694 0.827 -0.415 1.157 sum 7.824 -10.932 2.667 13.706 Atomic orbital electron populations 1.69937 1.05958 1.26893 1.50632 1.24926 0.94865 0.99184 0.95141 0.86467 0.80039 0.83524 0.77559 1.19820 1.20914 1.20993 1.21445 0.93327 0.90495 1.50682 0.92340 1.19372 0.87378 0.82071 0.98605 1.47693 1.44937 1.35141 1.02545 1.19527 0.82184 0.84741 0.84609 1.90849 1.55902 1.60051 1.30152 1.21297 1.02703 1.00953 0.92683 1.22838 0.76172 0.77828 0.92065 1.90891 1.51737 1.46127 1.46078 1.84497 1.63038 1.49384 1.37106 1.21581 1.04263 0.95331 0.83094 1.23272 0.98083 1.04063 0.96132 1.23441 0.93573 1.02764 1.03370 0.92784 0.93896 0.94246 0.85644 0.85656 0.73447 0.86715 0.86704 0.89027 0.89381 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.54 8.70 -34.44 -0.30 -14.84 16 8 H 0.06 1.65 7.21 -52.48 -0.38 1.27 16 9 C 0.24 6.27 4.66 -5.19 -0.02 6.25 16 10 N -0.57 -11.83 2.79 -167.48 -0.47 -12.30 16 11 C 0.51 10.54 7.64 -10.98 -0.08 10.45 16 12 O -0.50 -13.12 13.84 -18.92 -0.26 -13.38 16 13 C -0.14 -1.91 4.82 -29.03 -0.14 -2.05 16 14 C 0.47 7.30 8.32 36.00 0.30 7.60 16 15 O -0.47 -9.64 14.96 -26.85 -0.40 -10.04 16 16 O -0.53 -5.79 13.42 -39.26 -0.53 -6.32 16 17 C 0.06 0.98 5.77 -67.93 -0.39 0.59 16 18 C -0.18 -2.73 9.74 -26.73 -0.26 -2.99 16 19 C -0.19 -2.94 10.28 -26.73 -0.27 -3.21 16 20 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 21 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 22 H 0.04 1.01 5.99 -51.93 -0.31 0.70 16 23 H 0.13 1.43 7.85 -51.93 -0.41 1.02 16 24 H 0.13 1.32 7.98 -51.93 -0.41 0.91 16 25 H 0.41 2.81 9.10 45.56 0.41 3.22 16 26 H 0.12 1.31 7.14 -51.93 -0.37 0.94 16 27 H 0.11 2.15 6.11 -51.93 -0.32 1.84 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.11 2.04 6.93 -51.93 -0.36 1.68 16 LS Contribution 264.96 15.07 3.99 3.99 Total: -1.00 -36.10 264.96 -5.74 -41.84 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -2.51 Total: 1.55 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.27 Total: 3.42 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.27 Total: -38.05 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -1.19 Total: -29.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -36.10 -5.74 -41.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050917709.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.069 kcal (2) G-P(sol) polarization free energy of solvation -36.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds