Wall clock time and date at job start Mon Mar 30 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 119.99889 * 2 1 4 4 H 1.48501 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47106 * 299.99515 * 3 2 1 6 6 H 1.48497 * 109.47535 * 60.00095 * 3 2 1 7 7 C 1.37877 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99311 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00211 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46730 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99694 * 270.27699 * 10 9 7 12 12 O 1.21277 * 120.00169 * 4.80417 * 11 10 9 13 13 C 1.50703 * 120.00113 * 184.80575 * 11 10 9 14 14 C 1.50697 * 109.47488 * 185.55145 * 13 11 10 15 15 O 1.20830 * 119.99965 * 0.02562 * 14 13 11 16 16 O 1.34229 * 120.00194 * 179.97438 * 14 13 11 17 17 C 1.46495 * 120.00174 * 90.00688 * 10 9 7 18 18 C 1.52997 * 117.49983 * 2.84156 * 17 10 9 19 19 C 1.53001 * 60.00192 * 252.51237 * 18 17 10 20 20 H 0.96999 * 119.99957 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.46755 * 60.01041 * 9 7 2 22 22 H 1.08994 * 109.47619 * 300.00151 * 9 7 2 23 23 H 1.09006 * 109.46598 * 305.55254 * 13 11 10 24 24 H 1.08997 * 109.46934 * 65.54642 * 13 11 10 25 25 H 0.96699 * 117.00014 * 179.97438 * 16 14 13 26 26 H 1.08996 * 115.55221 * 148.55833 * 17 10 9 27 27 H 1.09001 * 117.49631 * 0.02562 * 18 17 10 28 28 H 1.09002 * 117.49913 * 145.01993 * 18 17 10 29 29 H 1.09001 * 117.49890 * 252.50875 * 19 18 17 30 30 H 1.08999 * 117.51256 * 107.47757 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.6452 -4.1222 -1.1641 12 8 2.3239 -3.6042 -2.2125 13 6 3.5389 -5.3357 -1.1659 14 6 3.9989 -5.6187 -2.5728 15 8 3.6385 -4.9076 -3.4808 16 8 4.8099 -6.6600 -2.8171 17 6 2.6789 -4.1684 1.2719 18 6 2.0944 -3.5874 2.5609 19 6 3.5358 -3.2653 2.1614 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8881 22 1 0.6246 -2.5564 0.8919 23 1 4.4051 -5.1498 -0.5308 24 1 2.9863 -6.1943 -0.7846 25 1 5.0780 -6.8017 -3.7353 26 1 2.9140 -5.2326 1.2604 27 1 1.3554 -2.7919 2.4646 28 1 1.9445 -4.2695 3.3978 29 1 4.3342 -3.7356 2.7354 30 1 3.7456 -2.2579 1.8020 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050917709.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:14 Heat of formation + Delta-G solvation = -119.060318 kcal Electronic energy + Delta-G solvation = -15930.764565 eV Core-core repulsion = 13112.366326 eV Total energy + Delta-G solvation = -2818.398239 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.56014 -40.28286 -38.18839 -36.87385 -35.19032 -33.79702 -32.13305 -29.14039 -25.36213 -23.65232 -23.13068 -22.56410 -19.69171 -19.15570 -18.68387 -17.88236 -17.48491 -17.19581 -16.73077 -16.09870 -15.66427 -15.24468 -14.85646 -14.42012 -13.98128 -13.45434 -13.35154 -13.19064 -12.82777 -12.72143 -12.42754 -12.20036 -12.08375 -11.92950 -11.61407 -11.41470 -11.19378 -10.63507 -10.48599 -9.23380 -8.22559 -6.35399 1.31136 1.32363 1.35581 1.46198 1.71047 1.87149 2.34827 2.56789 3.06424 3.11888 3.46068 4.04410 4.16672 4.26429 4.31848 4.36340 4.52801 4.88666 5.00511 5.11630 5.21916 5.31233 5.53814 5.57576 5.70819 5.84681 6.06519 6.70291 6.78675 7.09321 7.29410 7.49665 8.84337 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.008582 C = 0.007315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.421521 B = 3261.801612 C = 3826.616041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.260 3.740 10 N -0.578 5.578 11 C 0.492 3.508 12 O -0.568 6.568 13 C -0.120 4.120 14 C 0.479 3.521 15 O -0.531 6.531 16 O -0.504 6.504 17 C 0.056 3.944 18 C -0.181 4.181 19 C -0.187 4.187 20 H 0.266 0.734 21 H -0.009 1.009 22 H 0.035 0.965 23 H 0.167 0.833 24 H 0.175 0.825 25 H 0.427 0.573 26 H 0.176 0.824 27 H 0.069 0.931 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.005 -14.548 5.404 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.069 0.931 9 C 0.139 3.861 10 N -0.309 5.309 11 C 0.279 3.721 12 O -0.446 6.446 13 C -0.159 4.159 14 C 0.321 3.679 15 O -0.419 6.419 16 O -0.319 6.319 17 C -0.047 4.047 18 C -0.219 4.219 19 C -0.225 4.225 20 H 0.075 0.925 21 H 0.009 0.991 22 H 0.053 0.947 23 H 0.184 0.816 24 H 0.193 0.807 25 H 0.289 0.711 26 H 0.193 0.807 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.451 -13.901 4.993 17.535 hybrid contribution 0.005 1.397 -0.979 1.706 sum 9.456 -12.504 4.014 16.183 Atomic orbital electron populations 1.70050 1.07416 1.27902 1.51572 1.25805 0.95766 1.02853 0.94825 0.85459 0.78828 0.79209 0.77897 1.19279 1.21113 1.19231 1.21670 0.92993 0.91842 1.50189 0.93122 1.18780 0.87924 0.83675 0.95752 1.47680 1.44046 1.33941 1.05215 1.20726 0.81979 0.86092 0.83272 1.90821 1.58527 1.62602 1.32623 1.21276 1.03031 0.98717 0.92869 1.23074 0.75402 0.77475 0.91950 1.90898 1.54339 1.48619 1.48013 1.84436 1.61413 1.47076 1.38934 1.22241 1.04117 0.97954 0.80426 1.23268 0.97147 1.03741 0.97700 1.23429 0.94734 1.00929 1.03438 0.92532 0.99129 0.94682 0.81573 0.80746 0.71115 0.80695 0.91282 0.84713 0.84677 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.96 46.19 29.54 68.60 2.03 48.22 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.53 -30.74 8.70 25.60 0.22 -30.51 16 8 H 0.05 2.95 7.21 -2.91 -0.02 2.93 16 9 C 0.26 14.05 4.66 85.63 0.40 14.45 16 10 N -0.58 -23.87 2.79 -802.17 -2.23 -26.11 16 11 C 0.49 20.37 7.64 87.66 0.67 21.04 16 12 O -0.57 -31.43 13.84 20.39 0.28 -31.15 16 13 C -0.12 -2.91 4.82 29.10 0.14 -2.77 16 14 C 0.48 13.72 8.32 71.24 0.59 14.31 16 15 O -0.53 -22.25 14.96 29.69 0.44 -21.81 16 16 O -0.50 -9.15 13.42 -51.41 -0.69 -9.84 16 17 C 0.06 1.55 5.77 44.99 0.26 1.81 16 18 C -0.18 -5.15 9.74 30.59 0.30 -4.85 16 19 C -0.19 -5.14 10.28 30.60 0.31 -4.82 16 20 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 21 H -0.01 -0.60 7.50 -2.39 -0.02 -0.62 16 22 H 0.04 1.91 5.99 -2.39 -0.01 1.89 16 23 H 0.17 2.77 7.85 -2.38 -0.02 2.75 16 24 H 0.18 2.58 7.98 -2.39 -0.02 2.57 16 25 H 0.43 4.53 9.10 -74.06 -0.67 3.85 16 26 H 0.18 2.77 7.14 -2.39 -0.02 2.76 16 27 H 0.07 2.64 6.11 -2.39 -0.01 2.62 16 28 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 2.44 6.93 -2.39 -0.02 2.43 16 Total: -1.00 -87.43 264.96 3.97 -83.46 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.50 Total: 4.62 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 3.36 Total: 9.47 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -1.95 Total: -82.97 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: 0.04 Total: -62.80 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -87.43 3.97 -83.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050917709.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.601 kcal (2) G-P(sol) polarization free energy of solvation -87.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds