Wall clock time and date at job start Mon Mar 30 2020 03:16:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.46498 * 120.00007 * 2 1
4 4 C 1.50698 * 109.47530 * 270.00358 * 3 2 1
5 5 H 1.08002 * 119.99659 * 0.02562 * 4 3 2
6 6 C 1.37877 * 119.99953 * 180.02562 * 4 3 2
7 7 N 1.31512 * 120.00450 * 359.97438 * 6 4 3
8 8 Si 1.86804 * 119.99566 * 180.02562 * 6 4 3
9 9 H 1.48504 * 109.47051 * 60.00182 * 8 6 4
10 10 H 1.48504 * 109.46727 * 179.97438 * 8 6 4
11 11 H 1.48497 * 109.47402 * 299.99536 * 8 6 4
12 12 C 1.38608 * 119.99990 * 180.02562 * 2 1 3
13 13 N 1.29684 * 124.95023 * 359.97438 * 12 2 1
14 14 C 1.32121 * 116.86800 * 180.02562 * 13 12 2
15 15 C 1.50703 * 122.71131 * 180.02562 * 14 13 12
16 16 N 1.46906 * 109.47109 * 275.02662 * 15 14 13
17 17 C 1.33322 * 114.58039 * 0.26706 * 14 13 12
18 18 S 1.70966 * 124.94834 * 179.97438 * 12 2 1
19 19 H 1.09004 * 109.46915 * 269.99370 * 1 2 3
20 20 H 1.09006 * 109.47607 * 29.99485 * 1 2 3
21 21 H 1.09001 * 109.47806 * 149.99771 * 1 2 3
22 22 H 1.08998 * 109.46956 * 30.00780 * 3 2 1
23 23 H 1.09004 * 109.47195 * 150.00041 * 3 2 1
24 24 H 0.96996 * 120.00353 * 179.97438 * 7 6 4
25 25 H 1.08992 * 109.46894 * 155.02397 * 15 14 13
26 26 H 1.09004 * 109.47113 * 35.02548 * 15 14 13
27 27 H 1.00902 * 111.00068 * 56.04268 * 16 15 14
28 28 H 1.00897 * 110.99706 * 179.97438 * 16 15 14
29 29 H 1.07997 * 125.95274 * 179.68995 * 17 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2687 0.0000
4 6 2.4486 1.7039 -1.4208
5 1 2.0973 1.0963 -2.2417
6 6 3.1268 2.8776 -1.6726
7 7 3.5542 3.6176 -0.6730
8 14 3.4374 3.4173 -3.4338
9 1 2.1395 3.5957 -4.1330
10 1 4.1801 4.7033 -3.4337
11 1 4.2392 2.3823 -4.1346
12 6 2.1580 -1.2004 -0.0005
13 7 1.6089 -2.3752 -0.0006
14 6 2.4238 -3.4152 -0.0006
15 6 1.9280 -4.8383 -0.0012
16 7 1.6518 -5.2613 1.3782
17 6 3.7202 -3.1039 0.0051
18 16 3.8613 -1.3479 -0.0012
19 1 -0.3633 -0.0001 1.0277
20 1 -0.3634 0.8901 -0.5138
21 1 -0.3635 -0.8899 -0.5138
22 1 1.6084 2.0283 0.5139
23 1 3.1499 1.1384 0.5138
24 1 4.0316 4.4432 -0.8502
25 1 2.6883 -5.4877 -0.4350
26 1 1.0140 -4.9044 -0.5914
27 1 0.9975 -4.6358 1.8241
28 1 1.3174 -6.2128 1.4046
29 1 4.5408 -3.8060 0.0108
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000070628742.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:16:09
Heat of formation + Delta-G solvation = 47.759098 kcal
Electronic energy + Delta-G solvation = -13414.420090 eV
Core-core repulsion = 11078.301306 eV
Total energy + Delta-G solvation = -2336.118784 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 227.079 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-39.14736 -36.28520 -33.96373 -32.66593 -29.22584 -27.94911 -25.98827 -25.15317
-23.24533 -20.83407 -18.86412 -17.25514 -16.61886 -15.90762 -15.48363 -14.81532
-14.71276 -14.07423 -13.73399 -13.36000 -12.66971 -12.46921 -12.23917 -11.90788
-11.69927 -11.39224 -10.99853 -10.83748 -10.46793 -10.22931 -9.96425 -9.11095
-8.88503 -8.68172 -8.60250 -8.37165 -6.76859 -6.16787 -4.29182 1.76171
2.00672 2.64032 3.24164 3.28586 3.31527 3.53121 3.80802 4.32490
4.83294 5.06432 5.13127 5.40545 5.64698 5.86547 5.94453 6.06906
6.26424 6.34480 6.61036 6.92048 7.06021 7.12935 7.46379 7.57686
7.78973 7.97963 8.03246 8.62450 8.80792 9.38438 10.85817
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.042190 B = 0.007261 C = 0.006860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 663.508581 B = 3855.042847 C = 4080.396672
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.108 3.892
2 N -0.563 5.563
3 C 0.249 3.751
4 C -0.540 4.540
5 H 0.062 0.938
6 C 0.067 3.933
7 N -0.891 5.891
8 Si 0.900 3.100
9 H -0.276 1.276
10 H -0.285 1.285
11 H -0.274 1.274
12 C 0.340 3.660
13 N -0.581 5.581
14 C 0.110 3.890
15 C 0.142 3.858
16 N -0.844 5.844
17 C -0.323 4.323
18 S 0.113 5.887
19 H 0.040 0.960
20 H 0.070 0.930
21 H 0.064 0.936
22 H 0.045 0.955
23 H 0.037 0.963
24 H 0.267 0.733
25 H 0.081 0.919
26 H 0.038 0.962
27 H 0.346 0.654
28 H 0.338 0.662
29 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.670 -11.024 1.697 11.469
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.037 4.037
2 N -0.278 5.278
3 C 0.129 3.871
4 C -0.579 4.579
5 H 0.080 0.920
6 C -0.137 4.137
7 N -0.529 5.529
8 Si 0.727 3.273
9 H -0.201 1.201
10 H -0.210 1.210
11 H -0.199 1.199
12 C -0.031 4.031
13 N -0.311 5.311
14 C -0.023 4.023
15 C 0.009 3.991
16 N -0.374 5.374
17 C -0.467 4.467
18 S 0.363 5.637
19 H 0.059 0.941
20 H 0.089 0.911
21 H 0.083 0.917
22 H 0.063 0.937
23 H 0.055 0.945
24 H 0.077 0.923
25 H 0.100 0.900
26 H 0.056 0.944
27 H 0.158 0.842
28 H 0.151 0.849
29 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -1.617 -9.793 1.864 10.099
hybrid contribution -1.085 -0.488 -1.304 1.765
sum -2.701 -10.281 0.561 10.645
Atomic orbital electron populations
1.21481 0.79527 1.02447 1.00276 1.46672 1.05388 1.02032 1.73754
1.19528 0.91820 0.77815 0.97915 1.21437 1.37449 1.07031 0.92021
0.91992 1.24936 0.94994 0.96025 0.97726 1.69906 1.37648 1.14347
1.30997 0.86521 0.78558 0.77964 0.84273 1.20100 1.21027 1.19915
1.23522 0.93493 0.89802 0.96276 1.66239 1.37451 0.96312 1.31055
1.19438 0.88719 0.94085 1.00048 1.20134 0.99327 0.89882 0.89742
1.58706 1.54351 1.06869 1.17520 1.26120 1.00330 0.97880 1.22321
1.84306 1.04591 1.01108 1.73673 0.94127 0.91113 0.91699 0.93722
0.94518 0.92317 0.90035 0.94351 0.84177 0.84941 0.82180
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 2.00 10.56 59.84 0.63 2.63 15
2 N -0.56 -12.37 2.96 -185.31 -0.55 -12.91 15
3 C 0.25 6.13 5.13 -5.20 -0.03 6.11 15
4 C -0.54 -14.45 9.39 -34.44 -0.32 -14.77 15
5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 15
6 C 0.07 1.79 5.46 -17.82 -0.10 1.70 15
7 N -0.89 -24.92 13.29 55.43 0.74 -24.19 15
8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 15
9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15
10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15
11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15
12 C 0.34 7.32 7.74 -87.69 -0.68 6.64 15
13 N -0.58 -11.72 9.80 -11.36 -0.11 -11.84 15
14 C 0.11 1.96 6.25 -84.18 -0.53 1.44 15
15 C 0.14 1.96 7.22 -4.97 -0.04 1.92 15
16 N -0.84 -10.41 9.61 -11.40 -0.11 -10.52 15
17 C -0.32 -5.71 11.08 29.02 0.32 -5.38 15
18 S 0.11 2.27 21.69 -107.50 -2.33 -0.06 15
19 H 0.04 0.68 8.14 -51.93 -0.42 0.25 15
20 H 0.07 1.27 8.07 -51.93 -0.42 0.85 15
21 H 0.06 1.16 7.62 -51.93 -0.40 0.77 15
22 H 0.04 1.13 8.07 -51.93 -0.42 0.71 15
23 H 0.04 0.96 7.05 -51.93 -0.37 0.59 15
24 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15
25 H 0.08 0.98 8.10 -51.93 -0.42 0.56 15
26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 15
27 H 0.35 4.46 8.99 -39.29 -0.35 4.11 15
28 H 0.34 3.12 9.08 -39.29 -0.36 2.77 15
29 H 0.16 2.40 8.06 -52.49 -0.42 1.98 15
LS Contribution 268.47 15.07 4.05 4.05
Total: -1.00 -28.97 268.47 -7.62 -36.59
By element:
Atomic # 1 Polarization: 6.26 SS G_CDS: -3.54 Total: 2.72 kcal
Atomic # 6 Polarization: 1.01 SS G_CDS: -0.73 Total: 0.28 kcal
Atomic # 7 Polarization: -59.42 SS G_CDS: -0.03 Total: -59.46 kcal
Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal
Atomic # 16 Polarization: 2.27 SS G_CDS: -2.33 Total: -0.06 kcal
Total LS contribution 4.05 Total: 4.05 kcal
Total: -28.97 -7.62 -36.59 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070628742.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.347 kcal
(2) G-P(sol) polarization free energy of solvation -28.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.376 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.759 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds