Wall clock time and date at job start Mon Mar 30 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00007 * 2 1 4 4 C 1.50698 * 109.47530 * 270.00358 * 3 2 1 5 5 H 1.08002 * 119.99659 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99953 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00450 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99566 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47051 * 60.00182 * 8 6 4 10 10 H 1.48504 * 109.46727 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47402 * 299.99536 * 8 6 4 12 12 C 1.38608 * 119.99990 * 180.02562 * 2 1 3 13 13 N 1.29684 * 124.95023 * 359.97438 * 12 2 1 14 14 C 1.32121 * 116.86800 * 180.02562 * 13 12 2 15 15 C 1.50703 * 122.71131 * 180.02562 * 14 13 12 16 16 N 1.46906 * 109.47109 * 275.02662 * 15 14 13 17 17 C 1.33322 * 114.58039 * 0.26706 * 14 13 12 18 18 S 1.70966 * 124.94834 * 179.97438 * 12 2 1 19 19 H 1.09004 * 109.46915 * 269.99370 * 1 2 3 20 20 H 1.09006 * 109.47607 * 29.99485 * 1 2 3 21 21 H 1.09001 * 109.47806 * 149.99771 * 1 2 3 22 22 H 1.08998 * 109.46956 * 30.00780 * 3 2 1 23 23 H 1.09004 * 109.47195 * 150.00041 * 3 2 1 24 24 H 0.96996 * 120.00353 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.46894 * 155.02397 * 15 14 13 26 26 H 1.09004 * 109.47113 * 35.02548 * 15 14 13 27 27 H 1.00902 * 111.00068 * 56.04268 * 16 15 14 28 28 H 1.00897 * 110.99706 * 179.97438 * 16 15 14 29 29 H 1.07997 * 125.95274 * 179.68995 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5542 3.6176 -0.6730 8 14 3.4374 3.4173 -3.4338 9 1 2.1395 3.5957 -4.1330 10 1 4.1801 4.7033 -3.4337 11 1 4.2392 2.3823 -4.1346 12 6 2.1580 -1.2004 -0.0005 13 7 1.6089 -2.3752 -0.0006 14 6 2.4238 -3.4152 -0.0006 15 6 1.9280 -4.8383 -0.0012 16 7 1.6518 -5.2613 1.3782 17 6 3.7202 -3.1039 0.0051 18 16 3.8613 -1.3479 -0.0012 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3634 0.8901 -0.5138 21 1 -0.3635 -0.8899 -0.5138 22 1 1.6084 2.0283 0.5139 23 1 3.1499 1.1384 0.5138 24 1 4.0316 4.4432 -0.8502 25 1 2.6883 -5.4877 -0.4350 26 1 1.0140 -4.9044 -0.5914 27 1 0.9975 -4.6358 1.8241 28 1 1.3174 -6.2128 1.4046 29 1 4.5408 -3.8060 0.0108 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070628742.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:09 Heat of formation + Delta-G solvation = 47.759098 kcal Electronic energy + Delta-G solvation = -13414.420090 eV Core-core repulsion = 11078.301306 eV Total energy + Delta-G solvation = -2336.118784 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.14736 -36.28520 -33.96373 -32.66593 -29.22584 -27.94911 -25.98827 -25.15317 -23.24533 -20.83407 -18.86412 -17.25514 -16.61886 -15.90762 -15.48363 -14.81532 -14.71276 -14.07423 -13.73399 -13.36000 -12.66971 -12.46921 -12.23917 -11.90788 -11.69927 -11.39224 -10.99853 -10.83748 -10.46793 -10.22931 -9.96425 -9.11095 -8.88503 -8.68172 -8.60250 -8.37165 -6.76859 -6.16787 -4.29182 1.76171 2.00672 2.64032 3.24164 3.28586 3.31527 3.53121 3.80802 4.32490 4.83294 5.06432 5.13127 5.40545 5.64698 5.86547 5.94453 6.06906 6.26424 6.34480 6.61036 6.92048 7.06021 7.12935 7.46379 7.57686 7.78973 7.97963 8.03246 8.62450 8.80792 9.38438 10.85817 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.042190 B = 0.007261 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.508581 B = 3855.042847 C = 4080.396672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.563 5.563 3 C 0.249 3.751 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.891 5.891 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.340 3.660 13 N -0.581 5.581 14 C 0.110 3.890 15 C 0.142 3.858 16 N -0.844 5.844 17 C -0.323 4.323 18 S 0.113 5.887 19 H 0.040 0.960 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.037 0.963 24 H 0.267 0.733 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.346 0.654 28 H 0.338 0.662 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 -11.024 1.697 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.278 5.278 3 C 0.129 3.871 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.199 1.199 12 C -0.031 4.031 13 N -0.311 5.311 14 C -0.023 4.023 15 C 0.009 3.991 16 N -0.374 5.374 17 C -0.467 4.467 18 S 0.363 5.637 19 H 0.059 0.941 20 H 0.089 0.911 21 H 0.083 0.917 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.617 -9.793 1.864 10.099 hybrid contribution -1.085 -0.488 -1.304 1.765 sum -2.701 -10.281 0.561 10.645 Atomic orbital electron populations 1.21481 0.79527 1.02447 1.00276 1.46672 1.05388 1.02032 1.73754 1.19528 0.91820 0.77815 0.97915 1.21437 1.37449 1.07031 0.92021 0.91992 1.24936 0.94994 0.96025 0.97726 1.69906 1.37648 1.14347 1.30997 0.86521 0.78558 0.77964 0.84273 1.20100 1.21027 1.19915 1.23522 0.93493 0.89802 0.96276 1.66239 1.37451 0.96312 1.31055 1.19438 0.88719 0.94085 1.00048 1.20134 0.99327 0.89882 0.89742 1.58706 1.54351 1.06869 1.17520 1.26120 1.00330 0.97880 1.22321 1.84306 1.04591 1.01108 1.73673 0.94127 0.91113 0.91699 0.93722 0.94518 0.92317 0.90035 0.94351 0.84177 0.84941 0.82180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.00 10.56 59.84 0.63 2.63 15 2 N -0.56 -12.37 2.96 -185.31 -0.55 -12.91 15 3 C 0.25 6.13 5.13 -5.20 -0.03 6.11 15 4 C -0.54 -14.45 9.39 -34.44 -0.32 -14.77 15 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 15 6 C 0.07 1.79 5.46 -17.82 -0.10 1.70 15 7 N -0.89 -24.92 13.29 55.43 0.74 -24.19 15 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 15 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 12 C 0.34 7.32 7.74 -87.69 -0.68 6.64 15 13 N -0.58 -11.72 9.80 -11.36 -0.11 -11.84 15 14 C 0.11 1.96 6.25 -84.18 -0.53 1.44 15 15 C 0.14 1.96 7.22 -4.97 -0.04 1.92 15 16 N -0.84 -10.41 9.61 -11.40 -0.11 -10.52 15 17 C -0.32 -5.71 11.08 29.02 0.32 -5.38 15 18 S 0.11 2.27 21.69 -107.50 -2.33 -0.06 15 19 H 0.04 0.68 8.14 -51.93 -0.42 0.25 15 20 H 0.07 1.27 8.07 -51.93 -0.42 0.85 15 21 H 0.06 1.16 7.62 -51.93 -0.40 0.77 15 22 H 0.04 1.13 8.07 -51.93 -0.42 0.71 15 23 H 0.04 0.96 7.05 -51.93 -0.37 0.59 15 24 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 25 H 0.08 0.98 8.10 -51.93 -0.42 0.56 15 26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 15 27 H 0.35 4.46 8.99 -39.29 -0.35 4.11 15 28 H 0.34 3.12 9.08 -39.29 -0.36 2.77 15 29 H 0.16 2.40 8.06 -52.49 -0.42 1.98 15 LS Contribution 268.47 15.07 4.05 4.05 Total: -1.00 -28.97 268.47 -7.62 -36.59 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.54 Total: 2.72 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.73 Total: 0.28 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.03 Total: -59.46 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.33 Total: -0.06 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.97 -7.62 -36.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070628742.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.347 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds