Wall clock time and date at job start Mon Mar 30 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00007 * 2 1 4 4 C 1.50698 * 109.47530 * 270.00358 * 3 2 1 5 5 H 1.08002 * 119.99659 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99953 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00450 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99566 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47051 * 60.00182 * 8 6 4 10 10 H 1.48504 * 109.46727 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47402 * 299.99536 * 8 6 4 12 12 C 1.38608 * 119.99990 * 180.02562 * 2 1 3 13 13 N 1.29684 * 124.95023 * 359.97438 * 12 2 1 14 14 C 1.32121 * 116.86800 * 180.02562 * 13 12 2 15 15 C 1.50703 * 122.71131 * 180.02562 * 14 13 12 16 16 N 1.46906 * 109.47109 * 275.02662 * 15 14 13 17 17 C 1.33322 * 114.58039 * 0.26706 * 14 13 12 18 18 S 1.70966 * 124.94834 * 179.97438 * 12 2 1 19 19 H 1.09004 * 109.46915 * 269.99370 * 1 2 3 20 20 H 1.09006 * 109.47607 * 29.99485 * 1 2 3 21 21 H 1.09001 * 109.47806 * 149.99771 * 1 2 3 22 22 H 1.08998 * 109.46956 * 30.00780 * 3 2 1 23 23 H 1.09004 * 109.47195 * 150.00041 * 3 2 1 24 24 H 0.96996 * 120.00353 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.46894 * 155.02397 * 15 14 13 26 26 H 1.09004 * 109.47113 * 35.02548 * 15 14 13 27 27 H 1.00902 * 111.00068 * 56.04268 * 16 15 14 28 28 H 1.00897 * 110.99706 * 179.97438 * 16 15 14 29 29 H 1.07997 * 125.95274 * 179.68995 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5542 3.6176 -0.6730 8 14 3.4374 3.4173 -3.4338 9 1 2.1395 3.5957 -4.1330 10 1 4.1801 4.7033 -3.4337 11 1 4.2392 2.3823 -4.1346 12 6 2.1580 -1.2004 -0.0005 13 7 1.6089 -2.3752 -0.0006 14 6 2.4238 -3.4152 -0.0006 15 6 1.9280 -4.8383 -0.0012 16 7 1.6518 -5.2613 1.3782 17 6 3.7202 -3.1039 0.0051 18 16 3.8613 -1.3479 -0.0012 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3634 0.8901 -0.5138 21 1 -0.3635 -0.8899 -0.5138 22 1 1.6084 2.0283 0.5139 23 1 3.1499 1.1384 0.5138 24 1 4.0316 4.4432 -0.8502 25 1 2.6883 -5.4877 -0.4350 26 1 1.0140 -4.9044 -0.5914 27 1 0.9975 -4.6358 1.8241 28 1 1.3174 -6.2128 1.4046 29 1 4.5408 -3.8060 0.0108 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070628742.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:09 Heat of formation + Delta-G solvation = 27.901167 kcal Electronic energy + Delta-G solvation = -13415.281194 eV Core-core repulsion = 11078.301306 eV Total energy + Delta-G solvation = -2336.979888 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.64093 -37.90877 -35.24338 -34.54524 -30.72412 -29.71775 -27.62542 -26.43957 -25.03884 -22.41824 -20.33959 -18.87611 -18.59675 -17.24559 -16.79033 -16.67120 -16.08990 -15.57656 -15.30201 -14.64981 -14.32257 -13.92078 -13.87930 -13.54522 -13.16353 -13.03248 -12.76572 -12.62988 -12.17575 -11.95810 -11.84961 -10.74446 -10.67737 -10.43331 -10.03017 -9.59754 -8.49828 -8.09794 -6.41539 0.24129 0.45307 1.15404 1.40011 1.41274 1.49412 2.05441 2.15937 2.40271 3.04453 3.61369 3.93824 4.27247 4.36990 4.53053 4.62935 4.69575 4.80297 4.87802 5.01983 5.05681 5.38142 5.58662 5.93044 5.99023 6.13990 6.39047 6.61638 6.67320 7.12114 7.30973 8.80216 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.042190 B = 0.007261 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.508581 B = 3855.042847 C = 4080.396672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.576 5.576 3 C 0.265 3.735 4 C -0.550 4.550 5 H 0.052 0.948 6 C 0.022 3.978 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.272 1.272 12 C 0.318 3.682 13 N -0.581 5.581 14 C 0.095 3.905 15 C 0.147 3.853 16 N -0.847 5.847 17 C -0.307 4.307 18 S 0.077 5.923 19 H 0.057 0.943 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.019 0.981 24 H 0.270 0.730 25 H 0.105 0.895 26 H 0.042 0.958 27 H 0.342 0.658 28 H 0.357 0.643 29 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -12.525 1.054 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.293 5.293 3 C 0.144 3.856 4 C -0.588 4.588 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.198 1.198 12 C -0.052 4.052 13 N -0.310 5.310 14 C -0.036 4.036 15 C 0.014 3.986 16 N -0.378 5.378 17 C -0.449 4.449 18 S 0.326 5.674 19 H 0.075 0.925 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.050 0.950 23 H 0.037 0.963 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.060 0.940 27 H 0.154 0.846 28 H 0.172 0.828 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.716 -11.352 1.227 11.547 hybrid contribution -1.054 -0.139 -1.058 1.499 sum -2.770 -11.491 0.169 11.821 Atomic orbital electron populations 1.21566 0.77780 1.02641 1.01400 1.46542 1.06396 1.01429 1.74947 1.19102 0.91086 0.78851 0.96589 1.21602 1.37479 1.07115 0.92642 0.93007 1.25695 0.94683 0.96037 1.01487 1.69999 1.38247 1.14762 1.32867 0.85573 0.78621 0.77664 0.79668 1.19395 1.20271 1.19754 1.23702 0.93819 0.90113 0.97601 1.66289 1.38081 0.96350 1.30308 1.20120 0.88716 0.95339 0.99459 1.20198 1.00137 0.87579 0.90667 1.58672 1.54571 1.08035 1.16553 1.26441 1.01294 0.96227 1.20943 1.84398 1.04877 1.04115 1.73961 0.92496 0.91078 0.91237 0.95013 0.96332 0.92078 0.87727 0.93990 0.84615 0.82777 0.79195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.04 10.56 127.77 1.35 5.39 15 2 N -0.58 -25.52 2.96 -740.20 -2.19 -27.71 15 3 C 0.26 13.35 5.13 85.63 0.44 13.79 15 4 C -0.55 -29.72 9.39 25.60 0.24 -29.48 15 5 H 0.05 2.85 7.81 -2.91 -0.02 2.83 15 6 C 0.02 1.17 5.46 84.66 0.46 1.63 15 7 N -0.92 -51.91 13.29 21.45 0.28 -51.63 15 8 Si 0.96 42.67 29.54 68.60 2.03 44.69 15 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 12 C 0.32 13.65 7.74 179.32 1.39 15.04 15 13 N -0.58 -22.77 9.80 -189.87 -1.86 -24.63 15 14 C 0.10 3.20 6.25 41.40 0.26 3.46 15 15 C 0.15 3.60 7.22 85.56 0.62 4.21 15 16 N -0.85 -18.45 9.61 -189.99 -1.83 -20.28 15 17 C -0.31 -10.19 11.08 66.71 0.74 -9.45 15 18 S 0.08 3.09 21.69 -56.49 -1.23 1.86 15 19 H 0.06 1.86 8.14 -2.38 -0.02 1.84 15 20 H 0.07 2.54 8.07 -2.38 -0.02 2.52 15 21 H 0.07 2.44 7.62 -2.39 -0.02 2.42 15 22 H 0.03 1.66 8.07 -2.39 -0.02 1.64 15 23 H 0.02 1.01 7.05 -2.39 -0.02 0.99 15 24 H 0.27 14.38 8.31 -92.71 -0.77 13.61 15 25 H 0.10 2.09 8.10 -2.39 -0.02 2.07 15 26 H 0.04 1.01 8.14 -2.38 -0.02 0.99 15 27 H 0.34 8.06 8.99 -89.69 -0.81 7.26 15 28 H 0.36 5.48 9.08 -89.70 -0.81 4.66 15 29 H 0.19 5.06 8.06 -2.91 -0.02 5.04 15 Total: -1.00 -60.85 268.47 0.25 -60.60 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.45 Total: 12.50 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.49 Total: 4.60 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.59 Total: -124.25 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.23 Total: 1.86 kcal Total: -60.85 0.25 -60.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070628742.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.498 kcal (2) G-P(sol) polarization free energy of solvation -60.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds