Wall clock time and date at job start Mon Mar 30 2020 02:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30292 * 126.33789 * 2 1 4 4 N 1.28527 * 110.07952 * 180.02562 * 3 2 1 5 5 C 1.31283 * 109.85396 * 359.97438 * 4 3 2 6 6 S 1.76198 * 126.48592 * 179.97438 * 5 4 3 7 7 C 1.80999 * 99.99925 * 0.02562 * 6 5 4 8 8 H 1.08997 * 109.47155 * 55.00122 * 7 6 5 9 9 C 1.52999 * 109.47427 * 295.00286 * 7 6 5 10 10 C 1.50701 * 109.47359 * 175.00082 * 7 6 5 11 11 H 1.08001 * 119.99591 * 0.02562 * 10 7 6 12 12 C 1.37874 * 120.00065 * 180.02562 * 10 7 6 13 13 N 1.31513 * 119.99957 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 119.99946 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47068 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47197 * 120.00073 * 14 12 10 17 17 H 1.48493 * 109.47349 * 240.00090 * 14 12 10 18 18 N 1.36535 * 107.03097 * 0.02562 * 5 4 3 19 19 C 1.46501 * 127.14124 * 179.73904 * 18 5 4 20 20 H 1.08993 * 109.47479 * 269.95438 * 1 2 3 21 21 H 1.08998 * 109.47371 * 29.96121 * 1 2 3 22 22 H 1.09011 * 109.46925 * 149.95984 * 1 2 3 23 23 H 1.08998 * 109.47284 * 180.02562 * 9 7 6 24 24 H 1.09005 * 109.47156 * 300.00067 * 9 7 6 25 25 H 1.09002 * 109.47415 * 59.99768 * 9 7 6 26 26 H 0.97002 * 119.99850 * 179.97438 * 13 12 10 27 27 H 1.09004 * 109.47132 * 90.02416 * 19 18 5 28 28 H 1.08999 * 109.47215 * 210.02411 * 19 18 5 29 29 H 1.08999 * 109.47497 * 330.02743 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5129 0.6897 -0.0005 5 6 3.5953 -0.6205 -0.0004 6 16 5.0748 -1.5774 -0.0016 7 6 6.3067 -0.2512 -0.0022 8 1 6.1227 0.4160 0.8399 9 6 6.2062 0.5377 -1.3092 10 6 7.6857 -0.8465 0.1206 11 1 7.8073 -1.9173 0.1914 12 6 8.7921 -0.0241 0.1425 13 7 8.6441 1.2798 0.0557 14 14 10.5015 -0.7620 0.2939 15 1 10.3968 -2.2412 0.3733 16 1 11.3098 -0.3864 -0.8940 17 1 11.1568 -0.2450 1.5220 18 7 2.3175 -1.1015 -0.0002 19 6 1.9010 -2.5061 -0.0054 20 1 -0.3634 -0.0008 1.0276 21 1 -0.3634 0.8903 -0.5132 22 1 -0.3633 -0.8897 -0.5145 23 1 6.9484 1.3360 -1.3098 24 1 6.3902 -0.1295 -2.1514 25 1 5.2088 0.9683 -1.3981 26 1 9.4224 1.8584 0.0715 27 1 1.7990 -2.8586 1.0211 28 1 0.9438 -2.5994 -0.5184 29 1 2.6503 -3.1054 -0.5225 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071137183.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:23 Heat of formation + Delta-G solvation = 48.786329 kcal Electronic energy + Delta-G solvation = -13513.439307 eV Core-core repulsion = 11177.365067 eV Total energy + Delta-G solvation = -2336.074240 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.82309 -36.26822 -35.85253 -33.34526 -32.34359 -28.95841 -28.13531 -27.31328 -23.79715 -23.34121 -21.85344 -19.10230 -18.06619 -17.49479 -17.19176 -16.68571 -15.58740 -15.18812 -14.72637 -14.39759 -14.05052 -13.91020 -13.70704 -13.25166 -13.17813 -12.90898 -12.76259 -12.45565 -12.33456 -12.18914 -11.58437 -11.23422 -11.21429 -10.93972 -10.69289 -10.54097 -8.52380 -8.20968 -6.42241 0.30801 0.67972 1.43461 1.44093 1.49382 1.58840 1.78324 1.82374 2.39759 3.07519 3.51938 3.75849 4.05636 4.30984 4.49577 4.60525 4.65953 4.71628 4.86581 4.89483 4.98766 5.03959 5.10745 5.34532 5.57513 5.79058 5.89858 5.99447 6.62539 7.26496 7.66873 8.84599 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.058877 B = 0.006935 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.454711 B = 4036.540272 C = 4393.273632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.179 3.821 3 N -0.345 5.345 4 N -0.335 5.335 5 C 0.153 3.847 6 S -0.028 6.028 7 C 0.096 3.904 8 H 0.018 0.982 9 C -0.123 4.123 10 C -0.536 4.536 11 H 0.069 0.931 12 C 0.024 3.976 13 N -0.911 5.911 14 Si 0.976 3.024 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.277 1.277 18 N -0.469 5.469 19 C 0.064 3.936 20 H 0.103 0.897 21 H 0.098 0.902 22 H 0.111 0.889 23 H 0.067 0.933 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.268 0.732 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 -9.289 -0.699 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 N -0.185 5.185 4 N -0.178 5.178 5 C -0.223 4.223 6 S 0.202 5.798 7 C -0.033 4.033 8 H 0.036 0.964 9 C -0.182 4.182 10 C -0.576 4.576 11 H 0.087 0.913 12 C -0.178 4.178 13 N -0.548 5.548 14 Si 0.799 3.201 15 H -0.185 1.185 16 H -0.201 1.201 17 H -0.203 1.203 18 N -0.164 5.164 19 C -0.076 4.076 20 H 0.122 0.878 21 H 0.117 0.883 22 H 0.129 0.871 23 H 0.086 0.914 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.238 -8.888 -0.692 16.799 hybrid contribution 0.601 0.246 0.136 0.664 sum -13.637 -8.642 -0.557 16.155 Atomic orbital electron populations 1.20470 0.79243 1.06205 1.05586 1.26117 0.98746 0.81686 1.02625 1.73828 0.96857 1.26713 1.21086 1.74675 1.12631 1.08752 1.21710 1.27164 0.92272 0.95299 1.07571 1.84790 0.90190 1.12691 1.92128 1.20748 0.93042 0.91838 0.97690 0.96406 1.21826 0.99895 1.00466 0.96052 1.20930 0.89310 0.93881 1.53447 0.91252 1.25815 1.03311 0.95058 0.93665 1.70063 1.31681 1.04138 1.48924 0.85238 0.77957 0.78952 0.77911 1.18469 1.20078 1.20283 1.46673 1.03547 1.10531 1.55644 1.22524 1.04227 0.75017 1.05877 0.87826 0.88318 0.87052 0.91422 0.94538 0.94804 0.92242 0.88259 0.85073 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.26 71.24 0.73 -0.14 15 2 C 0.18 5.46 8.07 137.64 1.11 6.57 15 3 N -0.34 -14.58 12.17 -49.53 -0.60 -15.19 15 4 N -0.33 -16.22 9.74 -56.86 -0.55 -16.77 15 5 C 0.15 6.44 7.75 179.55 1.39 7.84 15 6 S -0.03 -1.21 21.18 -56.49 -1.20 -2.41 15 7 C 0.10 5.17 2.28 29.85 0.07 5.24 15 8 H 0.02 1.10 8.14 -2.40 -0.02 1.08 15 9 C -0.12 -6.59 8.79 71.98 0.63 -5.96 15 10 C -0.54 -29.76 8.58 25.60 0.22 -29.54 15 11 H 0.07 3.71 7.71 -2.91 -0.02 3.69 15 12 C 0.02 1.30 5.30 84.65 0.45 1.75 15 13 N -0.91 -53.23 11.32 21.45 0.24 -52.99 15 14 Si 0.98 42.89 29.54 68.60 2.03 44.92 15 15 H -0.26 -10.95 7.11 99.48 0.71 -10.24 15 16 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 17 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 18 N -0.47 -14.45 3.21 -536.44 -1.72 -16.18 15 19 C 0.06 1.12 10.92 127.77 1.39 2.51 15 20 H 0.10 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.10 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.11 0.91 7.26 -2.38 -0.02 0.89 15 23 H 0.07 3.95 6.07 -2.39 -0.01 3.94 15 24 H 0.04 1.84 8.14 -2.38 -0.02 1.82 15 25 H 0.03 1.79 5.91 -2.39 -0.01 1.77 15 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 15 27 H 0.10 1.40 8.14 -2.38 -0.02 1.38 15 28 H 0.13 1.15 7.25 -2.39 -0.02 1.13 15 29 H 0.09 1.67 7.86 -2.39 -0.02 1.65 15 Total: -1.00 -74.27 261.51 5.34 -68.93 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.15 Total: 1.40 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 6.00 Total: -11.72 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -2.64 Total: -101.13 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -1.20 Total: -2.41 kcal Total: -74.27 5.34 -68.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071137183.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.720 kcal (2) G-P(sol) polarization free energy of solvation -74.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds