Wall clock time and date at job start Mon Mar 30 2020 03:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00040 * 2 1 4 4 C 1.46899 * 111.00103 * 123.95822 * 2 1 3 5 5 C 1.52997 * 109.47254 * 169.99667 * 4 2 1 6 6 C 1.50697 * 109.47466 * 179.97438 * 5 4 2 7 7 N 1.30556 * 127.32940 * 89.70862 * 6 5 4 8 8 C 1.33110 * 113.76408 * 179.81242 * 7 6 5 9 9 C 1.41272 * 121.71403 * 180.20437 * 8 7 6 10 10 H 1.08008 * 120.00189 * 0.29413 * 9 8 7 11 11 C 1.39907 * 120.00199 * 180.29002 * 9 8 7 12 12 N 1.30833 * 119.99751 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00237 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46969 * 60.00296 * 13 11 9 15 15 H 1.48496 * 109.47107 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47141 * 300.00308 * 13 11 9 17 17 N 1.31658 * 116.57275 * 0.50826 * 8 7 6 18 18 S 1.56536 * 108.16240 * 359.72163 * 17 8 7 19 19 H 1.09007 * 109.46694 * 296.04358 * 1 2 3 20 20 H 1.08996 * 109.47015 * 56.04076 * 1 2 3 21 21 H 1.08997 * 109.47268 * 176.04963 * 1 2 3 22 22 H 1.09005 * 109.46528 * 183.95480 * 3 2 1 23 23 H 1.09000 * 109.46785 * 303.95569 * 3 2 1 24 24 H 1.08997 * 109.47044 * 63.96124 * 3 2 1 25 25 H 1.09002 * 109.47043 * 289.99738 * 4 2 1 26 26 H 1.09001 * 109.47354 * 49.99799 * 4 2 1 27 27 H 1.09002 * 109.47153 * 300.00004 * 5 4 2 28 28 H 1.08998 * 109.47533 * 59.99633 * 5 4 2 29 29 H 0.97003 * 119.99815 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5044 -0.9555 0.9702 6 6 4.0447 -1.7408 2.1374 7 7 4.1553 -3.0379 2.2356 8 6 4.6749 -3.4460 3.3912 9 6 4.8734 -4.8159 3.6736 10 1 4.6057 -5.5628 2.9407 11 6 5.4169 -5.2053 4.9026 12 7 5.7408 -4.3006 5.7906 13 14 5.6801 -7.0166 5.2757 14 1 6.6077 -7.5989 4.2728 15 1 6.2633 -7.1627 6.6335 16 1 4.3780 -7.7283 5.2177 17 7 4.9886 -2.5078 4.2599 18 16 4.6396 -1.1196 3.6262 19 1 -0.3633 0.4512 0.9234 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0708 22 1 3.0828 1.3431 -0.0709 23 1 1.5898 1.9163 -0.8524 24 1 1.7045 1.8723 0.9233 25 1 1.7976 -0.2249 2.0628 26 1 1.5090 -1.7407 1.1755 27 1 3.7023 -1.4967 0.0450 28 1 3.9910 0.0191 0.9321 29 1 6.1179 -4.5705 6.6425 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074241395.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:40 Heat of formation + Delta-G solvation = 49.435235 kcal Electronic energy + Delta-G solvation = -13244.174070 eV Core-core repulsion = 10908.127969 eV Total energy + Delta-G solvation = -2336.046101 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.72578 -37.49173 -33.64824 -32.15138 -29.37126 -27.58309 -27.26242 -25.09830 -22.15548 -20.85403 -19.06577 -17.43196 -16.97306 -15.50428 -15.28807 -14.83511 -14.78194 -13.58339 -13.47806 -13.35995 -12.68483 -12.37231 -11.79774 -11.68971 -11.52519 -11.33460 -11.18992 -11.15001 -10.75915 -10.41585 -9.96697 -9.32017 -9.13057 -8.90381 -8.34508 -8.32602 -7.56070 -6.53434 -4.56004 2.20389 2.87583 3.07491 3.11441 3.14800 3.94437 3.96268 4.11144 4.19958 5.09977 5.14070 5.22227 5.36951 5.39192 5.44523 5.59034 5.66626 5.74944 5.83782 5.92335 6.21214 6.35008 6.73217 7.03436 7.06179 7.20011 7.59180 8.09215 8.57098 8.72875 9.53741 10.37073 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.053092 B = 0.006160 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.256573 B = 4544.525998 C = 4874.468944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.019 3.981 4 C 0.063 3.937 5 C -0.020 4.020 6 C -0.004 4.004 7 N -0.497 5.497 8 C 0.339 3.661 9 C -0.407 4.407 10 H 0.090 0.910 11 C 0.065 3.935 12 N -0.743 5.743 13 Si 0.921 3.079 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.265 1.265 17 N -0.548 5.548 18 S 0.174 5.826 19 H 0.024 0.976 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.026 0.974 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 7.488 -6.876 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.129 4.129 4 C -0.066 4.066 5 C -0.062 4.062 6 C -0.296 4.296 7 N -0.220 5.220 8 C 0.079 3.921 9 C -0.453 4.453 10 H 0.108 0.892 11 C -0.158 4.158 12 N -0.371 5.371 13 Si 0.746 3.254 14 H -0.189 1.189 15 H -0.204 1.204 16 H -0.190 1.190 17 N -0.386 5.386 18 S 0.309 5.691 19 H 0.043 0.957 20 H 0.085 0.915 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.441 7.759 -6.095 11.267 hybrid contribution -0.318 -1.240 0.443 1.355 sum -5.759 6.519 -5.652 10.373 Atomic orbital electron populations 1.22362 0.87404 1.02320 1.00205 1.61967 1.07766 1.13815 1.43624 1.22464 1.01342 0.88846 1.00262 1.22109 0.95000 0.98580 0.90911 1.19837 0.93883 0.98069 0.94366 1.28924 1.03137 0.94592 1.02953 1.68730 1.19299 1.11408 1.22595 1.20244 0.93026 0.96356 0.82426 1.18700 1.37441 0.88335 1.00830 0.89162 1.25894 0.94332 0.99938 0.95627 1.69973 1.27535 1.34456 1.05112 0.86161 0.79516 0.81744 0.78029 1.18938 1.20367 1.18968 1.74845 1.38371 0.97694 1.27711 1.81008 1.57647 1.22990 1.07412 0.95734 0.91534 0.91297 0.90867 0.91652 0.95553 0.94374 0.90171 0.89373 0.90485 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.07 0.57 0.85 15 2 N -0.55 -7.01 5.02 -251.26 -1.26 -8.27 15 3 C 0.02 0.20 9.32 60.07 0.56 0.76 15 4 C 0.06 0.96 4.94 -3.83 -0.02 0.94 15 5 C -0.02 -0.34 5.77 -27.89 -0.16 -0.50 15 6 C 0.00 -0.09 7.00 -12.82 -0.09 -0.18 15 7 N -0.50 -13.07 10.83 -22.21 -0.24 -13.31 15 8 C 0.34 9.84 7.21 -160.29 -1.16 8.69 15 9 C -0.41 -11.64 9.43 -37.80 -0.36 -12.00 15 10 H 0.09 2.45 7.85 -52.48 -0.41 2.04 15 11 C 0.07 1.75 5.49 -17.35 -0.10 1.66 15 12 N -0.74 -21.02 11.62 55.54 0.65 -20.37 15 13 Si 0.92 19.65 29.56 -169.99 -5.02 14.63 15 14 H -0.26 -5.53 7.11 56.52 0.40 -5.13 15 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 17 N -0.55 -15.87 9.19 20.46 0.19 -15.68 15 18 S 0.17 4.07 23.29 -107.50 -2.50 1.57 15 19 H 0.02 0.25 8.14 -51.92 -0.42 -0.17 15 20 H 0.07 0.60 8.12 -51.93 -0.42 0.18 15 21 H 0.07 0.73 8.12 -51.93 -0.42 0.31 15 22 H 0.07 0.76 6.47 -51.93 -0.34 0.43 15 23 H 0.06 0.59 8.12 -51.93 -0.42 0.17 15 24 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 15 25 H 0.04 0.58 8.12 -51.93 -0.42 0.16 15 26 H 0.08 1.31 8.06 -51.93 -0.42 0.90 15 27 H 0.09 1.47 8.14 -51.93 -0.42 1.05 15 28 H 0.08 1.11 6.55 -51.93 -0.34 0.77 15 29 H 0.27 7.06 8.30 -40.82 -0.34 6.73 15 LS Contribution 263.70 15.07 3.97 3.97 Total: -1.00 -31.91 263.70 -8.56 -40.47 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -3.60 Total: -3.22 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -0.74 Total: 0.22 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.67 Total: -57.63 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.50 Total: 1.57 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.91 -8.56 -40.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074241395.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.902 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds