Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47230 * 2 1 4 4 N 1.30305 * 126.34163 * 90.02928 * 3 2 1 5 5 N 1.28524 * 110.07735 * 179.97438 * 4 3 2 6 6 C 1.31279 * 109.86182 * 0.02562 * 5 4 3 7 7 S 1.76192 * 126.48644 * 180.02562 * 6 5 4 8 8 C 1.81001 * 100.00087 * 359.97375 * 7 6 5 9 9 C 1.50696 * 109.47158 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00051 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00192 * 180.02562 * 9 8 7 12 12 N 1.31523 * 119.99445 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00259 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47467 * 59.99659 * 13 11 9 15 15 H 1.48503 * 109.47228 * 179.97438 * 13 11 9 16 16 H 1.48510 * 109.47124 * 299.99351 * 13 11 9 17 17 N 1.36542 * 107.03065 * 359.97438 * 6 5 4 18 18 C 1.46500 * 127.14594 * 179.97438 * 17 6 5 19 19 H 1.09002 * 109.46655 * 300.00203 * 1 2 3 20 20 H 1.08997 * 109.47152 * 59.99231 * 1 2 3 21 21 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46851 * 240.00311 * 2 1 3 23 23 H 1.08998 * 109.47354 * 120.00015 * 2 1 3 24 24 H 1.09000 * 109.46608 * 299.99574 * 8 7 6 25 25 H 1.08995 * 109.46795 * 60.00035 * 8 7 6 26 26 H 0.97002 * 119.99299 * 180.02562 * 12 11 9 27 27 H 1.09005 * 109.47199 * 90.02409 * 18 17 6 28 28 H 1.09000 * 109.47403 * 210.02576 * 18 17 6 29 29 H 1.08999 * 109.46802 * 330.03239 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2903 2.1486 1.0496 5 7 2.7019 3.3118 0.6896 6 6 2.7286 3.3897 -0.6206 7 16 3.2224 4.7844 -1.5773 8 6 3.6343 5.9454 -0.2512 9 6 4.0954 7.2491 -0.8501 10 1 4.1364 7.3659 -1.9230 11 6 4.4658 8.2925 -0.0284 12 7 4.4162 8.1500 1.2781 13 14 5.0380 9.9082 -0.7708 14 1 3.9536 10.4794 -1.6091 15 1 5.3758 10.8608 0.3172 16 1 6.2393 9.6692 -1.6106 17 7 2.3023 2.1850 -1.1016 18 6 2.1620 1.7928 -2.5061 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.7524 6.1208 0.3649 25 1 4.4302 5.5263 0.3644 26 1 4.6765 8.8842 1.8562 27 1 3.0961 1.3527 -2.8555 28 1 1.3584 1.0625 -2.6010 29 1 1.9275 2.6715 -3.1070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075321719.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = 58.763496 kcal Electronic energy + Delta-G solvation = -13188.089142 eV Core-core repulsion = 10852.447545 eV Total energy + Delta-G solvation = -2335.641597 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.44013 -34.95246 -33.80628 -33.17652 -29.45572 -28.48073 -27.42695 -24.20973 -23.08544 -22.18513 -20.34543 -17.48393 -16.32136 -16.11183 -15.84890 -14.86484 -14.58848 -14.18286 -13.42723 -13.10689 -13.00257 -12.67384 -12.40530 -12.24545 -11.83011 -11.38852 -11.18664 -10.89281 -10.84432 -10.49872 -10.01464 -9.91902 -9.67358 -9.35474 -9.22046 -8.59552 -6.86186 -6.18934 -4.27649 1.85880 2.02733 2.93155 3.25065 3.26971 3.30970 3.32064 3.49119 4.33276 4.40986 4.63508 4.81665 5.03718 5.12301 5.17021 5.31498 5.34183 5.49743 5.62990 5.86576 6.00360 6.13844 6.37601 7.04379 7.13301 7.24244 7.68020 7.93704 8.72825 9.11435 9.35709 10.91382 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.061936 B = 0.005888 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.970418 B = 4754.607875 C = 5093.917558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.029 4.029 3 C 0.159 3.841 4 N -0.287 5.287 5 N -0.291 5.291 6 C 0.177 3.823 7 S -0.060 6.060 8 C 0.081 3.919 9 C -0.528 4.528 10 H 0.067 0.933 11 C 0.071 3.929 12 N -0.881 5.881 13 Si 0.908 3.092 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.273 1.273 17 N -0.474 5.474 18 C 0.077 3.923 19 H 0.064 0.936 20 H 0.052 0.948 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.268 0.732 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 -14.413 -7.573 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C -0.111 4.111 4 N -0.127 5.127 5 N -0.135 5.135 6 C -0.197 4.197 7 S 0.169 5.831 8 C -0.067 4.067 9 C -0.568 4.568 10 H 0.085 0.915 11 C -0.135 4.135 12 N -0.517 5.517 13 Si 0.735 3.265 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.199 1.199 17 N -0.170 5.170 18 C -0.066 4.066 19 H 0.083 0.917 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.096 0.904 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.521 -13.775 -7.115 16.458 hybrid contribution 0.133 0.321 -0.353 0.495 sum -5.388 -13.454 -7.469 16.304 Atomic orbital electron populations 1.21755 0.93913 1.02133 1.02754 1.19885 0.96325 0.86597 1.04060 1.24912 1.05773 0.97587 0.82832 1.73917 1.15294 0.99279 1.24244 1.74823 1.19550 1.12034 1.07062 1.27411 1.04144 0.92567 0.95557 1.85361 1.80298 1.02215 1.15231 1.21317 1.01300 0.92635 0.91422 1.20551 1.47040 0.95738 0.93478 0.91533 1.24946 0.94942 0.98847 0.94733 1.69984 1.46143 1.32897 1.02722 0.86396 0.79310 0.82106 0.78708 1.19866 1.20930 1.19860 1.46328 1.51317 1.11063 1.08283 1.22018 1.03357 1.02856 0.78382 0.91695 0.92855 0.91532 0.90384 0.88511 0.92914 0.92896 0.92205 0.90215 0.89448 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.90 37.16 0.37 -0.97 15 2 C -0.03 -0.30 6.14 -27.88 -0.17 -0.47 15 3 C 0.16 2.60 7.32 -153.99 -1.13 1.47 15 4 N -0.29 -6.06 12.18 33.00 0.40 -5.66 15 5 N -0.29 -6.94 11.60 30.68 0.36 -6.58 15 6 C 0.18 3.73 8.07 -88.34 -0.71 3.02 15 7 S -0.06 -1.29 21.73 -107.50 -2.34 -3.62 15 8 C 0.08 2.16 4.99 36.00 0.18 2.34 15 9 C -0.53 -14.71 9.13 -34.44 -0.31 -15.02 15 10 H 0.07 1.78 7.71 -52.48 -0.40 1.38 15 11 C 0.07 1.99 5.46 -17.82 -0.10 1.89 15 12 N -0.88 -26.07 13.29 55.43 0.74 -25.33 15 13 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 15 14 H -0.27 -6.22 7.11 56.52 0.40 -5.81 15 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 16 H -0.27 -6.22 7.11 56.52 0.40 -5.81 15 17 N -0.47 -7.79 3.21 -120.90 -0.39 -8.18 15 18 C 0.08 0.82 10.78 59.85 0.65 1.47 15 19 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15 20 H 0.05 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.07 0.44 8.14 -51.93 -0.42 0.01 15 22 H 0.08 0.61 7.93 -51.93 -0.41 0.20 15 23 H 0.10 0.96 8.14 -51.93 -0.42 0.53 15 24 H 0.05 1.52 8.14 -51.92 -0.42 1.10 15 25 H 0.05 1.53 8.14 -51.92 -0.42 1.11 15 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 28 H 0.09 0.65 7.88 -51.93 -0.41 0.24 15 29 H 0.09 0.99 7.86 -51.93 -0.41 0.58 15 LS Contribution 271.33 15.07 4.09 4.09 Total: -1.00 -33.21 271.33 -7.12 -40.33 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -3.73 Total: -4.85 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.23 Total: -6.28 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 1.11 Total: -45.76 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.34 Total: -3.62 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.21 -7.12 -40.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321719.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.092 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds