Wall clock time and date at job start Mon Mar 30 2020 02:59:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50700 * 109.47230 * 2 1
4 4 N 1.30305 * 126.34163 * 90.02928 * 3 2 1
5 5 N 1.28524 * 110.07735 * 179.97438 * 4 3 2
6 6 C 1.31279 * 109.86182 * 0.02562 * 5 4 3
7 7 S 1.76192 * 126.48644 * 180.02562 * 6 5 4
8 8 C 1.81001 * 100.00087 * 359.97375 * 7 6 5
9 9 C 1.50696 * 109.47158 * 180.02562 * 8 7 6
10 10 H 1.08007 * 120.00051 * 359.97438 * 9 8 7
11 11 C 1.37879 * 120.00192 * 180.02562 * 9 8 7
12 12 N 1.31523 * 119.99445 * 359.97438 * 11 9 8
13 13 Si 1.86792 * 120.00259 * 179.97438 * 11 9 8
14 14 H 1.48496 * 109.47467 * 59.99659 * 13 11 9
15 15 H 1.48503 * 109.47228 * 179.97438 * 13 11 9
16 16 H 1.48510 * 109.47124 * 299.99351 * 13 11 9
17 17 N 1.36542 * 107.03065 * 359.97438 * 6 5 4
18 18 C 1.46500 * 127.14594 * 179.97438 * 17 6 5
19 19 H 1.09002 * 109.46655 * 300.00203 * 1 2 3
20 20 H 1.08997 * 109.47152 * 59.99231 * 1 2 3
21 21 H 1.08997 * 109.47066 * 179.97438 * 1 2 3
22 22 H 1.09001 * 109.46851 * 240.00311 * 2 1 3
23 23 H 1.08998 * 109.47354 * 120.00015 * 2 1 3
24 24 H 1.09000 * 109.46608 * 299.99574 * 8 7 6
25 25 H 1.08995 * 109.46795 * 60.00035 * 8 7 6
26 26 H 0.97002 * 119.99299 * 180.02562 * 12 11 9
27 27 H 1.09005 * 109.47199 * 90.02409 * 18 17 6
28 28 H 1.09000 * 109.47403 * 210.02576 * 18 17 6
29 29 H 1.08999 * 109.46802 * 330.03239 * 18 17 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2903 2.1486 1.0496
5 7 2.7019 3.3118 0.6896
6 6 2.7286 3.3897 -0.6206
7 16 3.2224 4.7844 -1.5773
8 6 3.6343 5.9454 -0.2512
9 6 4.0954 7.2491 -0.8501
10 1 4.1364 7.3659 -1.9230
11 6 4.4658 8.2925 -0.0284
12 7 4.4162 8.1500 1.2781
13 14 5.0380 9.9082 -0.7708
14 1 3.9536 10.4794 -1.6091
15 1 5.3758 10.8608 0.3172
16 1 6.2393 9.6692 -1.6106
17 7 2.3023 2.1850 -1.1016
18 6 2.1620 1.7928 -2.5061
19 1 -0.3633 0.5139 0.8900
20 1 -0.3633 0.5139 -0.8899
21 1 -0.3633 -1.0276 -0.0005
22 1 1.8933 -0.5138 -0.8900
23 1 1.8934 -0.5138 0.8900
24 1 2.7524 6.1208 0.3649
25 1 4.4302 5.5263 0.3644
26 1 4.6765 8.8842 1.8562
27 1 3.0961 1.3527 -2.8555
28 1 1.3584 1.0625 -2.6010
29 1 1.9275 2.6715 -3.1070
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000075321719.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:38
Heat of formation + Delta-G solvation = 58.763496 kcal
Electronic energy + Delta-G solvation = -13188.089142 eV
Core-core repulsion = 10852.447545 eV
Total energy + Delta-G solvation = -2335.641597 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 227.079 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-42.44013 -34.95246 -33.80628 -33.17652 -29.45572 -28.48073 -27.42695 -24.20973
-23.08544 -22.18513 -20.34543 -17.48393 -16.32136 -16.11183 -15.84890 -14.86484
-14.58848 -14.18286 -13.42723 -13.10689 -13.00257 -12.67384 -12.40530 -12.24545
-11.83011 -11.38852 -11.18664 -10.89281 -10.84432 -10.49872 -10.01464 -9.91902
-9.67358 -9.35474 -9.22046 -8.59552 -6.86186 -6.18934 -4.27649 1.85880
2.02733 2.93155 3.25065 3.26971 3.30970 3.32064 3.49119 4.33276
4.40986 4.63508 4.81665 5.03718 5.12301 5.17021 5.31498 5.34183
5.49743 5.62990 5.86576 6.00360 6.13844 6.37601 7.04379 7.13301
7.24244 7.68020 7.93704 8.72825 9.11435 9.35709 10.91382
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.061936 B = 0.005888 C = 0.005495
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 451.970418 B = 4754.607875 C = 5093.917558
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.029 4.029
3 C 0.159 3.841
4 N -0.287 5.287
5 N -0.291 5.291
6 C 0.177 3.823
7 S -0.060 6.060
8 C 0.081 3.919
9 C -0.528 4.528
10 H 0.067 0.933
11 C 0.071 3.929
12 N -0.881 5.881
13 Si 0.908 3.092
14 H -0.273 1.273
15 H -0.284 1.284
16 H -0.273 1.273
17 N -0.474 5.474
18 C 0.077 3.923
19 H 0.064 0.936
20 H 0.052 0.948
21 H 0.066 0.934
22 H 0.078 0.922
23 H 0.096 0.904
24 H 0.053 0.947
25 H 0.053 0.947
26 H 0.268 0.732
27 H 0.079 0.921
28 H 0.087 0.913
29 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.753 -14.413 -7.573 17.268
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.069 4.069
3 C -0.111 4.111
4 N -0.127 5.127
5 N -0.135 5.135
6 C -0.197 4.197
7 S 0.169 5.831
8 C -0.067 4.067
9 C -0.568 4.568
10 H 0.085 0.915
11 C -0.135 4.135
12 N -0.517 5.517
13 Si 0.735 3.265
14 H -0.199 1.199
15 H -0.209 1.209
16 H -0.199 1.199
17 N -0.170 5.170
18 C -0.066 4.066
19 H 0.083 0.917
20 H 0.071 0.929
21 H 0.085 0.915
22 H 0.096 0.904
23 H 0.115 0.885
24 H 0.071 0.929
25 H 0.071 0.929
26 H 0.078 0.922
27 H 0.098 0.902
28 H 0.106 0.894
29 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -5.521 -13.775 -7.115 16.458
hybrid contribution 0.133 0.321 -0.353 0.495
sum -5.388 -13.454 -7.469 16.304
Atomic orbital electron populations
1.21755 0.93913 1.02133 1.02754 1.19885 0.96325 0.86597 1.04060
1.24912 1.05773 0.97587 0.82832 1.73917 1.15294 0.99279 1.24244
1.74823 1.19550 1.12034 1.07062 1.27411 1.04144 0.92567 0.95557
1.85361 1.80298 1.02215 1.15231 1.21317 1.01300 0.92635 0.91422
1.20551 1.47040 0.95738 0.93478 0.91533 1.24946 0.94942 0.98847
0.94733 1.69984 1.46143 1.32897 1.02722 0.86396 0.79310 0.82106
0.78708 1.19866 1.20930 1.19860 1.46328 1.51317 1.11063 1.08283
1.22018 1.03357 1.02856 0.78382 0.91695 0.92855 0.91532 0.90384
0.88511 0.92914 0.92896 0.92205 0.90215 0.89448 0.88823
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.34 9.90 37.16 0.37 -0.97 15
2 C -0.03 -0.30 6.14 -27.88 -0.17 -0.47 15
3 C 0.16 2.60 7.32 -153.99 -1.13 1.47 15
4 N -0.29 -6.06 12.18 33.00 0.40 -5.66 15
5 N -0.29 -6.94 11.60 30.68 0.36 -6.58 15
6 C 0.18 3.73 8.07 -88.34 -0.71 3.02 15
7 S -0.06 -1.29 21.73 -107.50 -2.34 -3.62 15
8 C 0.08 2.16 4.99 36.00 0.18 2.34 15
9 C -0.53 -14.71 9.13 -34.44 -0.31 -15.02 15
10 H 0.07 1.78 7.71 -52.48 -0.40 1.38 15
11 C 0.07 1.99 5.46 -17.82 -0.10 1.89 15
12 N -0.88 -26.07 13.29 55.43 0.74 -25.33 15
13 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 15
14 H -0.27 -6.22 7.11 56.52 0.40 -5.81 15
15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15
16 H -0.27 -6.22 7.11 56.52 0.40 -5.81 15
17 N -0.47 -7.79 3.21 -120.90 -0.39 -8.18 15
18 C 0.08 0.82 10.78 59.85 0.65 1.47 15
19 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15
20 H 0.05 0.48 8.14 -51.93 -0.42 0.06 15
21 H 0.07 0.44 8.14 -51.93 -0.42 0.01 15
22 H 0.08 0.61 7.93 -51.93 -0.41 0.20 15
23 H 0.10 0.96 8.14 -51.93 -0.42 0.53 15
24 H 0.05 1.52 8.14 -51.92 -0.42 1.10 15
25 H 0.05 1.53 8.14 -51.92 -0.42 1.11 15
26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15
27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15
28 H 0.09 0.65 7.88 -51.93 -0.41 0.24 15
29 H 0.09 0.99 7.86 -51.93 -0.41 0.58 15
LS Contribution 271.33 15.07 4.09 4.09
Total: -1.00 -33.21 271.33 -7.12 -40.33
By element:
Atomic # 1 Polarization: -1.12 SS G_CDS: -3.73 Total: -4.85 kcal
Atomic # 6 Polarization: -5.05 SS G_CDS: -1.23 Total: -6.28 kcal
Atomic # 7 Polarization: -46.86 SS G_CDS: 1.11 Total: -45.76 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal
Atomic # 16 Polarization: -1.29 SS G_CDS: -2.34 Total: -3.62 kcal
Total LS contribution 4.09 Total: 4.09 kcal
Total: -33.21 -7.12 -40.33 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075321719.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.092 kcal
(2) G-P(sol) polarization free energy of solvation -33.209 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds