Wall clock time and date at job start Mon Mar 30 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47230 * 2 1 4 4 N 1.30305 * 126.34163 * 90.02928 * 3 2 1 5 5 N 1.28524 * 110.07735 * 179.97438 * 4 3 2 6 6 C 1.31279 * 109.86182 * 0.02562 * 5 4 3 7 7 S 1.76192 * 126.48644 * 180.02562 * 6 5 4 8 8 C 1.81001 * 100.00087 * 359.97375 * 7 6 5 9 9 C 1.50696 * 109.47158 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00051 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00192 * 180.02562 * 9 8 7 12 12 N 1.31523 * 119.99445 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00259 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47467 * 59.99659 * 13 11 9 15 15 H 1.48503 * 109.47228 * 179.97438 * 13 11 9 16 16 H 1.48510 * 109.47124 * 299.99351 * 13 11 9 17 17 N 1.36542 * 107.03065 * 359.97438 * 6 5 4 18 18 C 1.46500 * 127.14594 * 179.97438 * 17 6 5 19 19 H 1.09002 * 109.46655 * 300.00203 * 1 2 3 20 20 H 1.08997 * 109.47152 * 59.99231 * 1 2 3 21 21 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46851 * 240.00311 * 2 1 3 23 23 H 1.08998 * 109.47354 * 120.00015 * 2 1 3 24 24 H 1.09000 * 109.46608 * 299.99574 * 8 7 6 25 25 H 1.08995 * 109.46795 * 60.00035 * 8 7 6 26 26 H 0.97002 * 119.99299 * 180.02562 * 12 11 9 27 27 H 1.09005 * 109.47199 * 90.02409 * 18 17 6 28 28 H 1.09000 * 109.47403 * 210.02576 * 18 17 6 29 29 H 1.08999 * 109.46802 * 330.03239 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2903 2.1486 1.0496 5 7 2.7019 3.3118 0.6896 6 6 2.7286 3.3897 -0.6206 7 16 3.2224 4.7844 -1.5773 8 6 3.6343 5.9454 -0.2512 9 6 4.0954 7.2491 -0.8501 10 1 4.1364 7.3659 -1.9230 11 6 4.4658 8.2925 -0.0284 12 7 4.4162 8.1500 1.2781 13 14 5.0380 9.9082 -0.7708 14 1 3.9536 10.4794 -1.6091 15 1 5.3758 10.8608 0.3172 16 1 6.2393 9.6692 -1.6106 17 7 2.3023 2.1850 -1.1016 18 6 2.1620 1.7928 -2.5061 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.7524 6.1208 0.3649 25 1 4.4302 5.5263 0.3644 26 1 4.6765 8.8842 1.8562 27 1 3.0961 1.3527 -2.8555 28 1 1.3584 1.0625 -2.6010 29 1 1.9275 2.6715 -3.1070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075321719.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:37 Heat of formation + Delta-G solvation = 37.483444 kcal Electronic energy + Delta-G solvation = -13189.011914 eV Core-core repulsion = 10852.447545 eV Total energy + Delta-G solvation = -2336.564370 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.89467 -36.21709 -35.32292 -34.82688 -31.05685 -30.40681 -28.49291 -25.55484 -24.81428 -23.74080 -21.56972 -19.10647 -18.23552 -17.48651 -17.26737 -16.64416 -15.81874 -15.23381 -14.80670 -14.59635 -14.39655 -14.35441 -13.79903 -13.50860 -12.96980 -12.71028 -12.65585 -12.53582 -12.34408 -12.11803 -11.68845 -11.59562 -11.27516 -11.10433 -10.89937 -10.66345 -8.58450 -8.33079 -6.51904 0.22783 0.62098 1.40416 1.43081 1.46332 1.55652 1.73011 1.76670 2.36810 3.01160 3.35848 3.68979 3.94855 4.26693 4.33270 4.35305 4.53050 4.57180 4.75283 4.87235 4.96144 4.97221 5.00788 5.12517 5.31405 5.51459 5.77646 5.84575 6.57236 7.17949 7.61162 8.79086 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.061936 B = 0.005888 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.970418 B = 4754.607875 C = 5093.917558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.029 4.029 3 C 0.186 3.814 4 N -0.340 5.340 5 N -0.345 5.345 6 C 0.149 3.851 7 S -0.005 6.005 8 C 0.079 3.921 9 C -0.547 4.547 10 H 0.078 0.922 11 C 0.014 3.986 12 N -0.924 5.924 13 Si 0.985 3.015 14 H -0.261 1.261 15 H -0.280 1.280 16 H -0.261 1.261 17 N -0.465 5.465 18 C 0.062 3.938 19 H 0.039 0.961 20 H 0.057 0.943 21 H 0.101 0.899 22 H 0.119 0.881 23 H 0.104 0.896 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.271 0.729 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -15.957 -10.190 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.085 4.085 4 N -0.180 5.180 5 N -0.189 5.189 6 C -0.227 4.227 7 S 0.223 5.777 8 C -0.069 4.069 9 C -0.586 4.586 10 H 0.096 0.904 11 C -0.188 4.188 12 N -0.562 5.562 13 Si 0.807 3.193 14 H -0.185 1.185 15 H -0.205 1.205 16 H -0.185 1.185 17 N -0.159 5.159 18 C -0.078 4.078 19 H 0.058 0.942 20 H 0.076 0.924 21 H 0.120 0.880 22 H 0.137 0.863 23 H 0.122 0.878 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.147 0.853 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.031 -15.356 -9.766 19.172 hybrid contribution 0.204 0.571 0.447 0.754 sum -5.827 -14.785 -9.319 18.422 Atomic orbital electron populations 1.21744 0.92484 1.04107 1.01767 1.20296 0.97288 0.82779 1.06459 1.26073 1.01836 0.98929 0.81660 1.73808 1.18111 0.99324 1.26712 1.74697 1.21085 1.14054 1.09021 1.27254 1.05886 0.94242 0.95317 1.84673 1.80668 1.00840 1.11503 1.20874 0.98457 0.94591 0.92983 1.20953 1.47146 0.96377 0.94111 0.90410 1.26063 0.94590 1.03114 0.95011 1.70141 1.47155 1.34340 1.04546 0.85208 0.79337 0.76739 0.78022 1.18502 1.20516 1.18493 1.46647 1.49598 1.09157 1.10543 1.22564 1.06242 1.04096 0.74922 0.94170 0.92431 0.88046 0.86305 0.87772 0.96621 0.96597 0.91981 0.87950 0.85268 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.90 71.98 0.71 -1.38 15 2 C -0.03 -0.50 6.14 29.85 0.18 -0.31 15 3 C 0.19 5.81 7.32 137.63 1.01 6.82 15 4 N -0.34 -14.71 12.18 -49.52 -0.60 -15.31 15 5 N -0.35 -17.23 11.60 -56.86 -0.66 -17.89 15 6 C 0.15 6.38 8.07 179.55 1.45 7.83 15 7 S -0.01 -0.24 21.73 -56.49 -1.23 -1.46 15 8 C 0.08 4.50 4.99 71.23 0.36 4.85 15 9 C -0.55 -31.21 9.13 25.60 0.23 -30.97 15 10 H 0.08 4.16 7.71 -2.91 -0.02 4.13 15 11 C 0.01 0.79 5.46 84.65 0.46 1.26 15 12 N -0.92 -56.82 13.29 21.45 0.28 -56.53 15 13 Si 0.98 43.37 29.54 68.60 2.03 45.39 15 14 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 16 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 17 N -0.47 -14.48 3.21 -536.43 -1.72 -16.20 15 18 C 0.06 1.09 10.78 127.77 1.38 2.46 15 19 H 0.04 0.79 8.14 -2.39 -0.02 0.77 15 20 H 0.06 0.81 8.14 -2.39 -0.02 0.79 15 21 H 0.10 0.84 8.14 -2.39 -0.02 0.82 15 22 H 0.12 1.17 7.93 -2.39 -0.02 1.15 15 23 H 0.10 1.73 8.14 -2.39 -0.02 1.72 15 24 H 0.02 0.97 8.14 -2.40 -0.02 0.95 15 25 H 0.02 0.98 8.14 -2.40 -0.02 0.96 15 26 H 0.27 15.53 8.31 -92.71 -0.77 14.76 15 27 H 0.10 1.40 8.14 -2.38 -0.02 1.38 15 28 H 0.13 1.21 7.88 -2.39 -0.02 1.19 15 29 H 0.09 1.69 7.86 -2.39 -0.02 1.67 15 Total: -1.00 -77.85 271.33 5.01 -72.83 By element: Atomic # 1 Polarization: -2.52 SS G_CDS: 1.14 Total: -1.39 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 5.78 Total: -9.44 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -2.70 Total: -105.93 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -1.23 Total: -1.46 kcal Total: -77.85 5.01 -72.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321719.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.315 kcal (2) G-P(sol) polarization free energy of solvation -77.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds