Wall clock time and date at job start Mon Mar 30 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47244 * 2 1 4 4 C 1.46496 * 120.00034 * 270.00612 * 3 2 1 5 5 C 1.53000 * 109.46944 * 269.99478 * 4 3 2 6 6 C 1.39078 * 119.99770 * 89.99625 * 3 2 1 7 7 N 1.31564 * 120.43382 * 0.03176 * 6 3 2 8 8 S 1.70061 * 105.90577 * 179.72271 * 7 6 3 9 9 C 1.77463 * 94.14338 * 0.02562 * 8 7 6 10 10 C 1.40070 * 127.92279 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99672 * 173.80756 * 10 9 8 12 12 C 1.40285 * 119.99698 * 353.80352 * 10 9 8 13 13 N 1.30642 * 120.00377 * 6.28753 * 12 10 9 14 14 Si 1.86802 * 119.99647 * 186.28485 * 12 10 9 15 15 H 1.48502 * 109.47039 * 94.98277 * 14 12 10 16 16 H 1.48496 * 109.47418 * 214.98503 * 14 12 10 17 17 H 1.48502 * 109.47287 * 334.98956 * 14 12 10 18 18 N 1.30531 * 120.43133 * 179.74974 * 6 3 2 19 19 H 1.09007 * 109.47057 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47310 * 299.99498 * 1 2 3 21 21 H 1.08999 * 109.47190 * 59.99957 * 1 2 3 22 22 H 1.08997 * 109.47310 * 240.00502 * 2 1 3 23 23 H 1.09004 * 109.47630 * 120.00190 * 2 1 3 24 24 H 1.08998 * 109.47155 * 29.99414 * 4 3 2 25 25 H 1.08998 * 109.47491 * 149.99707 * 4 3 2 26 26 H 1.09001 * 109.46892 * 300.00399 * 5 4 3 27 27 H 1.09002 * 109.47279 * 59.99658 * 5 4 3 28 28 H 1.08994 * 109.47497 * 179.97438 * 5 4 3 29 29 H 0.97003 * 120.00148 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7104 6 6 2.2501 2.0369 1.2045 7 7 2.0342 1.4246 2.3488 8 16 2.4389 2.5464 3.5612 9 6 2.8907 3.8204 2.4114 10 6 3.3536 5.1116 2.6953 11 1 3.6877 5.7538 1.8939 12 6 3.3830 5.5705 4.0207 13 7 3.0964 4.7555 5.0007 14 14 3.8322 7.3469 4.3842 15 1 2.5929 8.1560 4.5050 16 1 4.5936 7.4144 5.6573 17 1 4.6672 7.8824 3.2791 18 7 2.6898 3.2658 1.2144 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5137 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.5816 1.6878 -2.0283 25 1 2.0954 3.1411 -1.1384 26 1 4.3882 2.2157 -0.9507 27 1 3.8745 0.7623 -1.8407 28 1 3.8889 2.3450 -2.6546 29 1 3.1164 5.0730 5.9171 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082385682.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:53 Heat of formation + Delta-G solvation = 31.579568 kcal Electronic energy + Delta-G solvation = -13648.227360 eV Core-core repulsion = 11311.406979 eV Total energy + Delta-G solvation = -2336.820381 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.34206 -35.60789 -34.18384 -31.64646 -30.18794 -28.03377 -27.28280 -23.28652 -22.71383 -20.91803 -18.23516 -17.48471 -16.36916 -15.35988 -15.18269 -14.65099 -13.79059 -13.36266 -13.10056 -13.07557 -12.33190 -12.10081 -11.90645 -11.65057 -11.50955 -11.43514 -11.21552 -10.63405 -10.48600 -10.40951 -9.95979 -9.86223 -9.09564 -8.61024 -8.15165 -7.60718 -7.19726 -6.46849 -5.07016 2.48452 2.85891 2.93394 3.04352 3.42590 3.57633 3.62001 4.23886 4.60562 5.08892 5.46039 5.59463 5.72893 5.85583 5.95196 6.00216 6.07988 6.19751 6.30712 6.54695 6.63650 6.65832 6.71693 6.81198 7.49078 7.69087 7.91892 8.10056 8.28760 8.62624 9.62890 9.89105 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.040733 B = 0.008140 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.238814 B = 3438.944976 C = 3924.353913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 N -0.604 5.604 4 C 0.143 3.857 5 C -0.163 4.163 6 C 0.532 3.468 7 N -0.655 5.655 8 S 0.082 5.918 9 C 0.242 3.758 10 C -0.350 4.350 11 H 0.108 0.892 12 C 0.058 3.942 13 N -0.748 5.748 14 Si 0.945 3.055 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.254 1.254 18 N -0.666 5.666 19 H 0.053 0.947 20 H 0.059 0.941 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 -0.172 -4.957 4.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 N -0.329 5.329 4 C 0.018 3.982 5 C -0.222 4.222 6 C 0.160 3.840 7 N -0.502 5.502 8 S 0.220 5.780 9 C -0.012 4.012 10 C -0.394 4.394 11 H 0.126 0.874 12 C -0.170 4.170 13 N -0.375 5.375 14 Si 0.767 3.233 15 H -0.187 1.187 16 H -0.195 1.195 17 H -0.177 1.177 18 N -0.406 5.406 19 H 0.072 0.928 20 H 0.078 0.922 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.638 -1.265 -4.024 4.266 hybrid contribution 0.281 1.057 -0.545 1.222 sum -0.357 -0.208 -4.569 4.588 Atomic orbital electron populations 1.22161 0.97537 1.00670 1.01905 1.21022 0.93156 0.82564 1.01394 1.45616 1.73556 1.12445 1.01275 1.21044 0.94710 0.98407 0.84052 1.22156 0.98868 1.00478 1.00694 1.19810 0.91445 0.86462 0.86269 1.77261 1.45962 1.26795 1.00138 1.85666 1.69901 1.04425 1.18023 1.24824 0.91924 0.96744 0.87743 1.19002 1.31442 0.95278 0.93708 0.87443 1.26335 0.93161 1.02208 0.95279 1.69173 1.29190 1.37102 1.02033 0.85656 0.79734 0.78656 0.79243 1.18726 1.19451 1.17750 1.67488 1.37419 1.10638 1.25090 0.92833 0.92206 0.93532 0.92459 0.90537 0.92690 0.90141 0.92085 0.93763 0.92838 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.24 37.15 0.38 -2.31 15 2 C 0.14 2.60 6.16 -4.04 -0.02 2.57 15 3 N -0.60 -12.92 2.59 -178.97 -0.46 -13.39 15 4 C 0.14 2.58 6.16 -4.04 -0.02 2.56 15 5 C -0.16 -2.68 10.24 37.16 0.38 -2.29 15 6 C 0.53 13.93 8.03 -325.49 -2.61 11.32 15 7 N -0.65 -17.98 11.05 27.87 0.31 -17.67 15 8 S 0.08 2.26 21.40 -107.50 -2.30 -0.04 15 9 C 0.24 6.68 7.46 -16.16 -0.12 6.56 15 10 C -0.35 -8.78 9.45 -38.13 -0.36 -9.14 15 11 H 0.11 2.54 7.86 -52.49 -0.41 2.13 15 12 C 0.06 1.30 5.49 -17.29 -0.09 1.21 15 13 N -0.75 -17.67 11.00 55.57 0.61 -17.06 15 14 Si 0.95 16.51 29.57 -169.99 -5.03 11.49 15 15 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 16 H -0.27 -4.56 7.11 56.52 0.40 -4.16 15 17 H -0.25 -4.36 7.11 56.52 0.40 -3.96 15 18 N -0.67 -18.14 9.49 -14.48 -0.14 -18.28 15 19 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 21 H 0.05 0.71 8.14 -51.93 -0.42 0.28 15 22 H 0.06 0.87 8.07 -51.93 -0.42 0.45 15 23 H 0.08 1.54 7.41 -51.93 -0.38 1.15 15 24 H 0.05 0.83 8.07 -51.93 -0.42 0.41 15 25 H 0.08 1.61 7.41 -51.93 -0.38 1.22 15 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 29 H 0.30 6.26 8.29 -40.82 -0.34 5.92 15 LS Contribution 265.61 15.07 4.00 4.00 Total: -1.00 -29.62 265.61 -9.17 -38.79 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.69 Total: 1.68 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -2.48 Total: 10.47 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: 0.32 Total: -66.40 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.49 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.30 Total: -0.04 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.62 -9.17 -38.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082385682.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.370 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds