Wall clock time and date at job start Mon Mar 30 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47244 * 2 1 4 4 C 1.46496 * 120.00034 * 270.00612 * 3 2 1 5 5 C 1.53000 * 109.46944 * 269.99478 * 4 3 2 6 6 C 1.39078 * 119.99770 * 89.99625 * 3 2 1 7 7 N 1.31564 * 120.43382 * 0.03176 * 6 3 2 8 8 S 1.70061 * 105.90577 * 179.72271 * 7 6 3 9 9 C 1.77463 * 94.14338 * 0.02562 * 8 7 6 10 10 C 1.40070 * 127.92279 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99672 * 173.80756 * 10 9 8 12 12 C 1.40285 * 119.99698 * 353.80352 * 10 9 8 13 13 N 1.30642 * 120.00377 * 6.28753 * 12 10 9 14 14 Si 1.86802 * 119.99647 * 186.28485 * 12 10 9 15 15 H 1.48502 * 109.47039 * 94.98277 * 14 12 10 16 16 H 1.48496 * 109.47418 * 214.98503 * 14 12 10 17 17 H 1.48502 * 109.47287 * 334.98956 * 14 12 10 18 18 N 1.30531 * 120.43133 * 179.74974 * 6 3 2 19 19 H 1.09007 * 109.47057 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47310 * 299.99498 * 1 2 3 21 21 H 1.08999 * 109.47190 * 59.99957 * 1 2 3 22 22 H 1.08997 * 109.47310 * 240.00502 * 2 1 3 23 23 H 1.09004 * 109.47630 * 120.00190 * 2 1 3 24 24 H 1.08998 * 109.47155 * 29.99414 * 4 3 2 25 25 H 1.08998 * 109.47491 * 149.99707 * 4 3 2 26 26 H 1.09001 * 109.46892 * 300.00399 * 5 4 3 27 27 H 1.09002 * 109.47279 * 59.99658 * 5 4 3 28 28 H 1.08994 * 109.47497 * 179.97438 * 5 4 3 29 29 H 0.97003 * 120.00148 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7104 6 6 2.2501 2.0369 1.2045 7 7 2.0342 1.4246 2.3488 8 16 2.4389 2.5464 3.5612 9 6 2.8907 3.8204 2.4114 10 6 3.3536 5.1116 2.6953 11 1 3.6877 5.7538 1.8939 12 6 3.3830 5.5705 4.0207 13 7 3.0964 4.7555 5.0007 14 14 3.8322 7.3469 4.3842 15 1 2.5929 8.1560 4.5050 16 1 4.5936 7.4144 5.6573 17 1 4.6672 7.8824 3.2791 18 7 2.6898 3.2658 1.2144 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5137 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.5816 1.6878 -2.0283 25 1 2.0954 3.1411 -1.1384 26 1 4.3882 2.2157 -0.9507 27 1 3.8745 0.7623 -1.8407 28 1 3.8889 2.3450 -2.6546 29 1 3.1164 5.0730 5.9171 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082385682.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:53 Heat of formation + Delta-G solvation = 15.020320 kcal Electronic energy + Delta-G solvation = -13648.945422 eV Core-core repulsion = 11311.406979 eV Total energy + Delta-G solvation = -2337.538444 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.18123 -37.31950 -36.01963 -33.10553 -32.03966 -29.63421 -29.20030 -24.97091 -24.21475 -22.62279 -19.99036 -19.45131 -18.24123 -17.04685 -16.92652 -16.26285 -15.49129 -15.00622 -14.57919 -14.55375 -13.93221 -13.69316 -13.52854 -13.32582 -13.02578 -12.86709 -12.59065 -12.05957 -11.97559 -11.84427 -11.74292 -11.59925 -11.10193 -10.53189 -10.06242 -9.64309 -9.00597 -8.34195 -7.09112 0.61932 1.40197 1.48041 1.58257 1.62522 1.70980 2.12490 2.40692 2.79466 3.13343 4.03949 4.22476 4.34825 4.50623 4.55764 4.59206 4.66518 4.79346 4.82388 4.98056 5.11526 5.13504 5.31452 5.40930 5.64633 5.82259 6.05749 6.22036 6.49744 6.79063 7.86843 7.93265 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.040733 B = 0.008140 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.238814 B = 3438.944976 C = 3924.353913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.138 3.862 3 N -0.604 5.604 4 C 0.137 3.863 5 C -0.152 4.152 6 C 0.523 3.477 7 N -0.679 5.679 8 S 0.034 5.966 9 C 0.209 3.791 10 C -0.354 4.354 11 H 0.119 0.881 12 C 0.020 3.980 13 N -0.768 5.768 14 Si 1.028 2.972 15 H -0.255 1.255 16 H -0.256 1.256 17 H -0.246 1.246 18 N -0.685 5.685 19 H 0.084 0.916 20 H 0.019 0.981 21 H 0.062 0.938 22 H 0.098 0.902 23 H 0.049 0.951 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.021 0.979 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 0.967 -6.119 6.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.014 3.986 3 N -0.330 5.330 4 C 0.014 3.986 5 C -0.211 4.211 6 C 0.152 3.848 7 N -0.528 5.528 8 S 0.171 5.829 9 C -0.043 4.043 10 C -0.398 4.398 11 H 0.137 0.863 12 C -0.205 4.205 13 N -0.395 5.395 14 Si 0.844 3.156 15 H -0.179 1.179 16 H -0.180 1.180 17 H -0.169 1.169 18 N -0.427 5.427 19 H 0.103 0.897 20 H 0.039 0.961 21 H 0.081 0.919 22 H 0.116 0.884 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.374 -0.170 -5.220 5.236 hybrid contribution 0.210 0.736 -0.184 0.788 sum -0.164 0.567 -5.404 5.437 Atomic orbital electron populations 1.22054 0.96106 1.02325 1.00663 1.21256 0.94292 0.80974 1.02050 1.46076 1.72789 1.13463 1.00651 1.21273 0.96783 0.97069 0.83479 1.22047 0.96623 1.01618 1.00788 1.20269 0.90448 0.86461 0.87671 1.77285 1.48313 1.26779 1.00425 1.85500 1.71980 1.05889 1.19560 1.25334 0.93443 0.97699 0.87791 1.19580 1.30164 0.94487 0.95591 0.86282 1.27546 0.92062 1.07093 0.93847 1.69207 1.27464 1.39574 1.03206 0.84486 0.79763 0.71704 0.79656 1.17932 1.17982 1.16883 1.67546 1.38958 1.11361 1.24839 0.89745 0.96140 0.91905 0.88353 0.93207 0.88629 0.92626 0.95954 0.92264 0.89718 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.79 10.24 71.98 0.74 -4.06 15 2 C 0.14 4.83 6.16 86.38 0.53 5.36 15 3 N -0.60 -25.75 2.59 -720.15 -1.87 -27.62 15 4 C 0.14 4.77 6.16 86.38 0.53 5.30 15 5 C -0.15 -4.73 10.24 71.98 0.74 -3.99 15 6 C 0.52 28.21 8.03 262.43 2.11 30.32 15 7 N -0.68 -38.89 11.05 -65.73 -0.73 -39.61 15 8 S 0.03 1.98 21.40 -56.49 -1.21 0.77 15 9 C 0.21 11.88 7.46 84.89 0.63 12.52 15 10 C -0.35 -17.85 9.45 23.21 0.22 -17.63 15 11 H 0.12 5.59 7.86 -2.91 -0.02 5.57 15 12 C 0.02 0.87 5.49 85.37 0.47 1.34 15 13 N -0.77 -36.20 11.00 21.88 0.24 -35.96 15 14 Si 1.03 31.87 29.57 68.60 2.03 33.90 15 15 H -0.26 -7.64 7.11 99.48 0.71 -6.94 15 16 H -0.26 -7.38 7.11 99.48 0.71 -6.67 15 17 H -0.25 -7.29 7.11 99.48 0.71 -6.59 15 18 N -0.68 -38.53 9.49 -199.72 -1.90 -40.43 15 19 H 0.08 2.11 8.14 -2.38 -0.02 2.09 15 20 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 21 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.10 2.65 8.07 -2.39 -0.02 2.63 15 23 H 0.05 2.02 7.41 -2.39 -0.02 2.00 15 24 H 0.10 2.55 8.07 -2.39 -0.02 2.53 15 25 H 0.06 2.21 7.41 -2.39 -0.02 2.19 15 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 15 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 15 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 29 H 0.32 12.87 8.29 -92.71 -0.77 12.11 15 Total: -1.00 -67.53 265.61 3.68 -63.86 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.14 Total: 15.92 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: 5.97 Total: 29.17 kcal Atomic # 7 Polarization: -139.38 SS G_CDS: -4.25 Total: -143.62 kcal Atomic # 14 Polarization: 31.87 SS G_CDS: 2.03 Total: 33.90 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.21 Total: 0.77 kcal Total: -67.53 3.68 -63.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082385682.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.877 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds