Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29316 * 126.06474 * 2 1 4 4 N 1.26100 * 117.97101 * 180.02562 * 3 2 1 5 5 C 1.30240 * 117.62099 * 359.97438 * 4 3 2 6 6 N 1.38698 * 126.16806 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99939 * 180.02562 * 6 5 4 8 8 C 1.46506 * 120.00032 * 0.02614 * 6 5 4 9 9 H 1.08999 * 109.46774 * 0.02562 * 8 6 5 10 10 C 1.52990 * 109.46739 * 120.00036 * 8 6 5 11 11 C 1.50700 * 109.47235 * 240.00116 * 8 6 5 12 12 H 1.07999 * 119.99992 * 269.94563 * 11 8 6 13 13 C 1.37879 * 120.00030 * 89.94336 * 11 8 6 14 14 N 1.31515 * 119.99754 * 353.30742 * 13 11 8 15 15 Si 1.86798 * 119.99997 * 173.30543 * 13 11 8 16 16 H 1.48500 * 109.47233 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.47174 * 300.00344 * 15 13 11 18 18 H 1.48499 * 109.47089 * 60.00158 * 15 13 11 19 19 S 1.76487 * 126.06684 * 180.30783 * 2 1 3 20 20 H 1.09002 * 109.47063 * 89.97974 * 1 2 3 21 21 H 1.09012 * 109.46886 * 209.97383 * 1 2 3 22 22 H 1.08997 * 109.47390 * 329.97039 * 1 2 3 23 23 H 1.09003 * 109.46553 * 269.99549 * 7 6 5 24 24 H 1.08996 * 109.47570 * 29.99236 * 7 6 5 25 25 H 1.08998 * 109.47369 * 150.00095 * 7 6 5 26 26 H 1.09004 * 109.47341 * 65.76417 * 10 8 6 27 27 H 1.09006 * 109.46820 * 185.75872 * 10 8 6 28 28 H 1.08998 * 109.47431 * 305.76087 * 10 8 6 29 29 H 0.96998 * 120.00243 * 354.48711 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2683 1.0453 0.0000 4 7 3.5167 0.8678 -0.0005 5 6 3.9521 -0.3597 -0.0005 6 7 5.2810 -0.7569 -0.0015 7 6 5.6194 -2.1822 -0.0018 8 6 6.3461 0.2490 -0.0021 9 1 5.9047 1.2456 -0.0012 10 6 7.2129 0.0745 1.2464 11 6 7.1982 0.0775 -1.2332 12 1 8.0605 -0.5722 -1.2069 13 6 6.8770 0.7501 -2.3932 14 7 5.7573 1.4360 -2.4669 15 14 8.0321 0.6872 -3.8598 16 1 7.4620 1.4868 -4.9736 17 1 9.3524 1.2470 -3.4744 18 1 8.2005 -0.7220 -4.2971 19 16 2.5460 -1.4266 -0.0077 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8903 0.5135 22 1 -0.3634 0.8897 0.5143 23 1 5.7042 -2.5357 1.0258 24 1 4.8371 -2.7414 -0.5150 25 1 6.5689 -2.3301 -0.5163 26 1 7.7348 -0.8811 1.1959 27 1 7.9412 0.8838 1.2991 28 1 6.5804 0.0966 2.1339 29 1 5.1200 1.4042 -1.7363 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083583587.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = 57.635884 kcal Electronic energy + Delta-G solvation = -13913.604747 eV Core-core repulsion = 11577.914253 eV Total energy + Delta-G solvation = -2335.690494 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.97450 -36.98979 -33.02996 -31.89530 -30.08378 -28.18166 -25.40151 -24.79449 -23.63969 -21.14591 -18.72919 -18.22773 -16.77210 -16.07973 -15.05154 -14.14888 -13.87806 -13.69723 -13.54762 -13.29651 -12.57718 -12.50060 -12.18425 -12.09208 -11.85544 -11.18596 -11.14665 -10.88259 -10.25955 -10.14105 -9.72085 -9.63958 -9.15376 -8.89360 -8.78274 -8.66860 -6.84685 -6.55790 -4.40059 1.45880 1.54796 2.07348 3.31180 3.33656 3.54103 3.59910 3.71029 4.37660 4.94673 5.21135 5.48575 5.58627 5.71609 5.84401 5.92115 6.02087 6.10791 6.25567 6.32875 6.37799 6.39046 6.83838 7.00189 7.58244 7.93543 8.04927 8.22395 8.65592 9.39547 9.66637 10.84331 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.031889 B = 0.009452 C = 0.008446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.828355 B = 2961.691535 C = 3314.476152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.042 4.042 3 N -0.214 5.214 4 N -0.359 5.359 5 C 0.334 3.666 6 N -0.534 5.534 7 C 0.092 3.908 8 C 0.228 3.772 9 H 0.074 0.926 10 C -0.138 4.138 11 C -0.601 4.601 12 H 0.057 0.943 13 C 0.030 3.970 14 N -0.878 5.878 15 Si 1.067 2.933 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.286 1.286 19 S -0.059 6.059 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.030 0.970 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 -6.950 4.502 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.329 4.329 3 N -0.049 5.049 4 N -0.209 5.209 5 C -0.037 4.037 6 N -0.249 5.249 7 C -0.052 4.052 8 C 0.131 3.869 9 H 0.092 0.908 10 C -0.197 4.197 11 C -0.641 4.641 12 H 0.075 0.925 13 C -0.182 4.182 14 N -0.511 5.511 15 Si 0.894 3.106 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.213 1.213 19 S 0.177 5.823 20 H 0.093 0.907 21 H 0.090 0.910 22 H 0.101 0.899 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.061 -6.101 3.001 7.919 hybrid contribution -0.209 -0.886 1.408 1.677 sum -4.270 -6.987 4.409 9.300 Atomic orbital electron populations 1.20044 0.85226 1.03071 1.02886 1.28714 1.01160 0.88114 1.14883 1.70540 0.97320 1.27080 1.09927 1.71276 1.04369 1.14726 1.30518 1.27497 0.91312 0.90167 0.94748 1.48999 0.98850 1.07527 1.69498 1.21611 1.02664 0.80595 1.00336 1.19499 0.84332 0.89113 0.93972 0.90841 1.21991 0.99419 1.01158 0.97129 1.22215 1.12101 1.32389 0.97356 0.92475 1.26060 0.98632 0.92576 1.00931 1.70638 1.08040 1.35856 1.36547 0.83587 0.75010 0.76463 0.75538 1.20529 1.20986 1.21274 1.85348 1.03160 1.15076 1.78742 0.90690 0.91047 0.89907 0.93608 0.92845 0.89264 0.93670 0.92197 0.95090 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.67 10.51 36.01 0.38 -0.29 15 2 C -0.04 -0.80 7.79 -13.34 -0.10 -0.90 15 3 N -0.21 -4.89 11.55 33.57 0.39 -4.50 15 4 N -0.36 -8.99 9.46 31.00 0.29 -8.70 15 5 C 0.33 7.70 7.68 -87.14 -0.67 7.03 15 6 N -0.53 -12.03 2.86 -175.66 -0.50 -12.53 15 7 C 0.09 1.68 9.64 59.85 0.58 2.25 15 8 C 0.23 5.58 2.35 -69.08 -0.16 5.41 15 9 H 0.07 2.05 5.97 -51.93 -0.31 1.74 15 10 C -0.14 -2.82 9.09 37.15 0.34 -2.48 15 11 C -0.60 -15.70 7.57 -34.44 -0.26 -15.96 15 12 H 0.06 1.44 7.82 -52.49 -0.41 1.03 15 13 C 0.03 0.83 5.45 -17.82 -0.10 0.73 15 14 N -0.88 -26.53 13.55 55.43 0.75 -25.78 15 15 Si 1.07 24.05 29.91 -169.99 -5.08 18.97 15 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 18 H -0.29 -6.13 7.11 56.52 0.40 -5.73 15 19 S -0.06 -1.10 22.24 -107.50 -2.39 -3.49 15 20 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.07 0.76 8.14 -51.92 -0.42 0.34 15 22 H 0.08 1.00 8.14 -51.93 -0.42 0.57 15 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.05 0.91 7.16 -51.93 -0.37 0.54 15 25 H 0.09 1.65 7.27 -51.93 -0.38 1.27 15 26 H 0.04 0.85 7.86 -51.93 -0.41 0.44 15 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 29 H 0.30 9.00 5.21 -40.82 -0.21 8.79 15 LS Contribution 261.11 15.07 3.93 3.93 Total: -1.00 -31.30 261.11 -6.03 -37.33 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -3.42 Total: -1.03 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 0.00 Total: -4.20 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.93 Total: -51.51 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.97 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.39 Total: -3.49 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.30 -6.03 -37.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083583587.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.969 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds