Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29316 * 126.06474 * 2 1 4 4 N 1.26100 * 117.97101 * 180.02562 * 3 2 1 5 5 C 1.30240 * 117.62099 * 359.97438 * 4 3 2 6 6 N 1.38698 * 126.16806 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99939 * 180.02562 * 6 5 4 8 8 C 1.46506 * 120.00032 * 0.02614 * 6 5 4 9 9 H 1.08999 * 109.46774 * 0.02562 * 8 6 5 10 10 C 1.52990 * 109.46739 * 120.00036 * 8 6 5 11 11 C 1.50700 * 109.47235 * 240.00116 * 8 6 5 12 12 H 1.07999 * 119.99992 * 269.94563 * 11 8 6 13 13 C 1.37879 * 120.00030 * 89.94336 * 11 8 6 14 14 N 1.31515 * 119.99754 * 353.30742 * 13 11 8 15 15 Si 1.86798 * 119.99997 * 173.30543 * 13 11 8 16 16 H 1.48500 * 109.47233 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.47174 * 300.00344 * 15 13 11 18 18 H 1.48499 * 109.47089 * 60.00158 * 15 13 11 19 19 S 1.76487 * 126.06684 * 180.30783 * 2 1 3 20 20 H 1.09002 * 109.47063 * 89.97974 * 1 2 3 21 21 H 1.09012 * 109.46886 * 209.97383 * 1 2 3 22 22 H 1.08997 * 109.47390 * 329.97039 * 1 2 3 23 23 H 1.09003 * 109.46553 * 269.99549 * 7 6 5 24 24 H 1.08996 * 109.47570 * 29.99236 * 7 6 5 25 25 H 1.08998 * 109.47369 * 150.00095 * 7 6 5 26 26 H 1.09004 * 109.47341 * 65.76417 * 10 8 6 27 27 H 1.09006 * 109.46820 * 185.75872 * 10 8 6 28 28 H 1.08998 * 109.47431 * 305.76087 * 10 8 6 29 29 H 0.96998 * 120.00243 * 354.48711 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2683 1.0453 0.0000 4 7 3.5167 0.8678 -0.0005 5 6 3.9521 -0.3597 -0.0005 6 7 5.2810 -0.7569 -0.0015 7 6 5.6194 -2.1822 -0.0018 8 6 6.3461 0.2490 -0.0021 9 1 5.9047 1.2456 -0.0012 10 6 7.2129 0.0745 1.2464 11 6 7.1982 0.0775 -1.2332 12 1 8.0605 -0.5722 -1.2069 13 6 6.8770 0.7501 -2.3932 14 7 5.7573 1.4360 -2.4669 15 14 8.0321 0.6872 -3.8598 16 1 7.4620 1.4868 -4.9736 17 1 9.3524 1.2470 -3.4744 18 1 8.2005 -0.7220 -4.2971 19 16 2.5460 -1.4266 -0.0077 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8903 0.5135 22 1 -0.3634 0.8897 0.5143 23 1 5.7042 -2.5357 1.0258 24 1 4.8371 -2.7414 -0.5150 25 1 6.5689 -2.3301 -0.5163 26 1 7.7348 -0.8811 1.1959 27 1 7.9412 0.8838 1.2991 28 1 6.5804 0.0966 2.1339 29 1 5.1200 1.4042 -1.7363 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083583587.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = 37.423759 kcal Electronic energy + Delta-G solvation = -13914.481211 eV Core-core repulsion = 11577.914253 eV Total energy + Delta-G solvation = -2336.566958 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.64344 -38.70772 -34.91680 -33.38348 -31.80913 -29.65092 -26.92627 -26.71826 -25.27421 -22.87182 -20.44291 -19.85626 -18.63893 -17.73852 -16.68538 -15.84488 -15.66198 -15.36439 -15.09152 -14.83883 -14.07773 -13.83037 -13.73913 -13.38504 -13.31045 -12.89889 -12.80651 -12.60487 -12.04027 -11.88360 -11.46284 -11.23161 -10.81631 -10.72160 -10.61833 -10.37524 -8.66841 -8.50672 -6.49761 -0.13955 -0.02648 0.48609 1.51853 1.57033 1.77826 1.93600 2.10668 2.54704 3.20511 3.59923 4.01966 4.26824 4.40242 4.47583 4.49180 4.66617 4.69055 4.73069 4.80541 4.90126 5.13510 5.21081 5.22563 5.75602 6.11028 6.23337 6.30565 6.56386 7.40614 8.03878 8.75848 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.031889 B = 0.009452 C = 0.008446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.828355 B = 2961.691535 C = 3314.476152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.025 4.025 3 N -0.263 5.263 4 N -0.402 5.402 5 C 0.299 3.701 6 N -0.548 5.548 7 C 0.092 3.908 8 C 0.232 3.768 9 H 0.028 0.972 10 C -0.127 4.127 11 C -0.606 4.606 12 H 0.065 0.935 13 C -0.020 4.020 14 N -0.931 5.931 15 Si 1.113 2.887 16 H -0.294 1.294 17 H -0.265 1.265 18 H -0.266 1.266 19 S 0.010 5.990 20 H 0.094 0.906 21 H 0.104 0.896 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 -9.167 4.947 11.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.312 4.312 3 N -0.096 5.096 4 N -0.252 5.252 5 C -0.073 4.073 6 N -0.263 5.263 7 C -0.051 4.051 8 C 0.132 3.868 9 H 0.046 0.954 10 C -0.186 4.186 11 C -0.645 4.645 12 H 0.083 0.917 13 C -0.224 4.224 14 N -0.566 5.566 15 Si 0.934 3.066 16 H -0.220 1.220 17 H -0.190 1.190 18 H -0.191 1.191 19 S 0.246 5.754 20 H 0.112 0.888 21 H 0.123 0.877 22 H 0.114 0.886 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.690 -8.343 3.469 10.180 hybrid contribution -0.232 -0.294 1.386 1.435 sum -4.921 -8.637 4.855 11.063 Atomic orbital electron populations 1.20400 0.81024 1.05366 1.04760 1.29903 1.03532 0.87635 1.10126 1.70521 0.97119 1.28794 1.13160 1.71208 1.05766 1.16849 1.31352 1.27522 0.92714 0.91190 0.95911 1.48321 0.98641 1.08578 1.70805 1.21808 1.02724 0.78245 1.02284 1.19237 0.84658 0.87739 0.95202 0.95375 1.21868 0.98970 1.02221 0.95560 1.22487 1.12488 1.31911 0.97649 0.91650 1.27400 0.98991 0.92024 1.03980 1.70731 1.09714 1.39270 1.36932 0.83019 0.73924 0.77374 0.72279 1.22005 1.18968 1.19074 1.84953 0.99971 1.12870 1.77619 0.88803 0.87739 0.88585 0.90710 0.91808 0.89622 0.91686 0.92108 0.94228 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.23 10.51 71.24 0.75 -0.48 15 2 C -0.02 -0.89 7.79 88.48 0.69 -0.20 15 3 N -0.26 -12.10 11.55 -47.71 -0.55 -12.65 15 4 N -0.40 -20.76 9.46 -55.84 -0.53 -21.28 15 5 C 0.30 13.80 7.68 179.13 1.38 15.18 15 6 N -0.55 -24.59 2.86 -709.67 -2.03 -26.62 15 7 C 0.09 3.18 9.64 127.77 1.23 4.41 15 8 C 0.23 11.50 2.35 44.24 0.10 11.60 15 9 H 0.03 1.65 5.97 -2.39 -0.01 1.64 15 10 C -0.13 -5.11 9.09 71.98 0.65 -4.46 15 11 C -0.61 -31.87 7.57 25.60 0.19 -31.67 15 12 H 0.07 3.24 7.82 -2.91 -0.02 3.22 15 13 C -0.02 -1.13 5.45 84.65 0.46 -0.67 15 14 N -0.93 -58.53 13.55 21.45 0.29 -58.24 15 15 Si 1.11 48.78 29.91 68.60 2.05 50.83 15 16 H -0.29 -13.42 7.11 99.48 0.71 -12.72 15 17 H -0.26 -10.66 7.11 99.48 0.71 -9.95 15 18 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 19 S 0.01 0.34 22.24 -56.49 -1.26 -0.91 15 20 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.10 1.72 8.14 -2.38 -0.02 1.70 15 22 H 0.10 2.00 8.14 -2.39 -0.02 1.98 15 23 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 24 H 0.06 2.04 7.16 -2.39 -0.02 2.02 15 25 H 0.09 3.01 7.27 -2.39 -0.02 2.99 15 26 H 0.06 2.31 7.86 -2.39 -0.02 2.29 15 27 H 0.06 2.38 8.14 -2.38 -0.02 2.36 15 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 29 H 0.28 18.17 5.21 -92.71 -0.48 17.69 15 Total: -1.00 -71.28 261.11 4.87 -66.41 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.43 Total: 8.75 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 5.46 Total: -6.29 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -2.82 Total: -118.79 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.05 Total: 50.83 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.26 Total: -0.91 kcal Total: -71.28 4.87 -66.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083583587.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.831 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds