Wall clock time and date at job start Mon Mar 30 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37795 * 126.56369 * 2 1 4 4 C 1.40124 * 125.28912 * 359.97438 * 3 2 1 5 5 H 1.07997 * 119.99651 * 0.02562 * 4 3 2 6 6 C 1.40404 * 119.99560 * 179.97438 * 4 3 2 7 7 N 1.30543 * 120.00503 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99657 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47160 * 60.00244 * 8 6 4 10 10 H 1.48497 * 109.47152 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47358 * 300.00784 * 8 6 4 12 12 N 1.32543 * 109.41780 * 180.02562 * 3 2 1 13 13 C 1.33790 * 109.84937 * 359.97438 * 12 3 2 14 14 C 1.40783 * 132.97766 * 180.29465 * 13 12 3 15 15 C 1.35923 * 120.05782 * 180.17866 * 14 13 12 16 16 C 1.40468 * 120.60542 * 359.49169 * 15 14 13 17 17 C 1.43193 * 119.88690 * 180.27934 * 16 15 14 18 18 N 6.02011 * 101.91814 * 179.97438 * 2 1 3 19 19 C 1.39513 * 120.23034 * 0.26051 * 16 15 14 20 20 C 1.38085 * 126.55683 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47063 * 269.99888 * 1 2 3 22 22 H 1.08997 * 109.47268 * 30.00176 * 1 2 3 23 23 H 1.08999 * 109.47458 * 149.99743 * 1 2 3 24 24 H 0.97003 * 120.00018 * 179.97438 * 7 6 4 25 25 H 1.08002 * 119.97053 * 359.93014 * 14 13 12 26 26 H 1.08002 * 119.70142 * 179.77718 * 15 14 13 27 27 H 1.07994 * 120.18073 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2858 1.1068 0.0000 4 6 1.8494 2.4383 -0.0005 5 1 0.7924 2.6601 -0.0005 6 6 2.7863 3.4841 0.0001 7 7 4.0639 3.2159 0.0006 8 14 2.2045 5.2592 0.0001 9 1 1.3846 5.5114 1.2123 10 1 3.3807 6.1656 0.0002 11 1 1.3855 5.5117 -1.2126 12 7 3.5523 0.7160 -0.0006 13 6 3.6154 -0.6204 -0.0004 14 6 4.6895 -1.5305 0.0045 15 6 4.4485 -2.8682 -0.0004 16 6 3.1318 -3.3576 0.0004 17 6 2.8956 -4.7699 0.0012 18 7 2.7082 -5.8903 0.0026 19 6 2.0534 -2.4724 0.0007 20 6 2.2874 -1.1092 -0.0005 21 1 -0.3633 0.0000 1.0276 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3634 -0.8899 -0.5139 24 1 4.7111 3.9385 0.0007 25 1 5.7060 -1.1654 0.0082 26 1 5.2768 -3.5612 -0.0002 27 1 1.0415 -2.8496 0.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213206167.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:50 Heat of formation + Delta-G solvation = 89.452417 kcal Electronic energy + Delta-G solvation = -14377.292117 eV Core-core repulsion = 11907.537340 eV Total energy + Delta-G solvation = -2469.754777 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60444 -37.06109 -35.28644 -33.85755 -32.83744 -29.80622 -29.17412 -26.56428 -25.92430 -22.12154 -21.51528 -19.85600 -17.97125 -17.18981 -16.23966 -15.24118 -14.88759 -14.63229 -13.93100 -13.42281 -13.21472 -13.16042 -12.70980 -12.28043 -12.16293 -12.02997 -11.81539 -11.50654 -11.38551 -10.89488 -10.55470 -10.53609 -10.50719 -9.55153 -9.22872 -8.20676 -7.52585 -7.11377 -6.92656 -4.88740 1.59730 2.37721 2.84341 2.89803 2.92497 3.27173 3.51214 3.62211 3.91261 4.10589 4.74614 4.76771 5.25629 5.43337 5.45816 5.63465 5.82054 5.96542 6.08751 6.18184 6.39641 6.53197 6.73367 6.89470 7.17355 7.24359 7.41337 7.58408 7.72313 8.00523 8.16392 8.35806 8.73451 9.64117 9.94956 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.052886 B = 0.006933 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.314680 B = 4037.547894 C = 4551.718494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.547 5.547 3 C 0.421 3.579 4 C -0.423 4.423 5 H 0.092 0.908 6 C 0.073 3.927 7 N -0.704 5.704 8 Si 0.923 3.077 9 H -0.262 1.262 10 H -0.273 1.273 11 H -0.262 1.262 12 N -0.530 5.530 13 C 0.148 3.852 14 C -0.137 4.137 15 C -0.063 4.063 16 C -0.124 4.124 17 C 0.286 3.714 18 N -0.482 5.482 19 C -0.042 4.042 20 C -0.013 4.013 21 H 0.052 0.948 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.285 0.715 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 1.246 -0.082 3.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.244 5.244 3 C 0.188 3.812 4 C -0.460 4.460 5 H 0.110 0.890 6 C -0.156 4.156 7 N -0.324 5.324 8 Si 0.746 3.254 9 H -0.186 1.186 10 H -0.197 1.197 11 H -0.186 1.186 12 N -0.253 5.253 13 C 0.014 3.986 14 C -0.159 4.159 15 C -0.086 4.086 16 C -0.131 4.131 17 C -0.026 4.026 18 N -0.160 5.160 19 C -0.067 4.067 20 C -0.120 4.120 21 H 0.071 0.929 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.138 0.862 26 H 0.133 0.867 27 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.990 0.216 -0.080 2.999 hybrid contribution -1.003 0.670 0.010 1.206 sum -3.993 0.886 -0.070 4.091 Atomic orbital electron populations 1.21476 0.78721 1.02569 1.01367 1.45356 1.05277 1.05168 1.68549 1.20471 0.83339 0.87573 0.89795 1.18659 0.95112 0.86756 1.45450 0.88956 1.25962 0.94391 1.01825 0.93441 1.69917 1.01666 1.35150 1.25707 0.86115 0.79423 0.79737 0.80120 1.18618 1.19748 1.18628 1.71409 1.16050 1.06167 1.31668 1.19792 0.90922 0.92577 0.95319 1.19628 0.97166 0.90744 1.08352 1.20138 0.93890 0.94860 0.99753 1.15139 0.93960 0.83186 1.20822 1.25881 0.92350 0.92712 0.91652 1.81129 1.08880 1.12392 1.13613 1.19426 0.96900 0.89203 1.01123 1.18598 0.92735 0.88444 1.12202 0.92910 0.90492 0.91886 0.90351 0.86213 0.86746 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 10.93 59.84 0.65 2.30 15 2 N -0.55 -11.79 3.26 -120.90 -0.39 -12.18 15 3 C 0.42 10.40 7.41 -155.69 -1.15 9.25 15 4 C -0.42 -9.86 8.99 -38.06 -0.34 -10.21 15 5 H 0.09 1.91 7.09 -52.49 -0.37 1.54 15 6 C 0.07 1.65 5.50 -17.28 -0.10 1.56 15 7 N -0.70 -17.11 11.85 55.57 0.66 -16.46 15 8 Si 0.92 16.29 29.56 -169.99 -5.03 11.26 15 9 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 10 H -0.27 -4.75 7.11 56.52 0.40 -4.35 15 11 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 12 N -0.53 -13.94 9.32 -10.25 -0.10 -14.03 15 13 C 0.15 3.49 7.20 -84.80 -0.61 2.88 15 14 C -0.14 -2.77 10.05 -39.45 -0.40 -3.17 15 15 C -0.06 -1.13 9.66 -39.57 -0.38 -1.51 15 16 C -0.12 -2.27 5.75 -106.66 -0.61 -2.88 15 17 C 0.29 5.19 15.31 -22.48 -0.34 4.85 15 18 N -0.48 -9.28 18.54 41.84 0.78 -8.50 15 19 C -0.04 -0.79 9.74 -39.08 -0.38 -1.17 15 20 C -0.01 -0.28 6.87 -83.77 -0.58 -0.86 15 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.08 1.15 7.32 -51.93 -0.38 0.77 15 23 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.29 6.22 8.29 -40.82 -0.34 5.88 15 25 H 0.12 2.26 8.06 -52.49 -0.42 1.83 15 26 H 0.11 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.11 1.77 8.06 -52.49 -0.42 1.34 15 LS Contribution 254.42 15.07 3.83 3.83 Total: -1.00 -27.71 254.42 -6.49 -34.19 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -2.00 Total: 0.84 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -4.24 Total: 1.04 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.94 Total: -51.17 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.26 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.71 -6.49 -34.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213206167.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.647 kcal (2) G-P(sol) polarization free energy of solvation -27.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds