Wall clock time and date at job start Mon Mar 30 2020 03:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46891 * 2 1 4 4 C 1.46496 * 120.00469 * 269.99833 * 3 2 1 5 5 C 1.50707 * 109.47045 * 270.00585 * 4 3 2 6 6 H 1.07992 * 119.99910 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99543 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99456 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00386 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47064 * 89.99890 * 9 7 5 11 11 H 1.48493 * 109.47081 * 209.99844 * 9 7 5 12 12 H 1.48497 * 109.46914 * 330.00197 * 9 7 5 13 13 C 1.38938 * 119.99798 * 90.00222 * 3 2 1 14 14 N 1.29694 * 125.38573 * 179.97438 * 13 3 2 15 15 C 1.32341 * 116.97949 * 180.02562 * 14 13 3 16 16 C 1.33778 * 115.60173 * 0.02562 * 15 14 13 17 17 N 1.40038 * 125.87308 * 179.97438 * 16 15 14 18 18 S 1.76137 * 125.38652 * 0.27321 * 13 3 2 19 19 H 1.08997 * 109.47334 * 300.00118 * 1 2 3 20 20 H 1.09001 * 109.47161 * 60.00231 * 1 2 3 21 21 H 1.09000 * 109.46704 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47334 * 239.99882 * 2 1 3 23 23 H 1.09001 * 109.47161 * 119.99768 * 2 1 3 24 24 H 1.09002 * 109.46921 * 29.99812 * 4 3 2 25 25 H 1.08996 * 109.47477 * 150.00066 * 4 3 2 26 26 H 0.97001 * 120.00136 * 180.02562 * 8 7 5 27 27 H 1.07997 * 122.19865 * 180.02562 * 15 14 13 28 28 H 0.97001 * 120.00565 * 0.02663 * 17 16 15 29 29 H 0.97005 * 119.99711 * 179.74568 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1491 2.3898 -2.8779 8 7 5.3913 2.1835 -3.2573 9 14 3.0124 3.4342 -3.9298 10 1 3.1148 4.8547 -3.5090 11 1 3.4059 3.3110 -5.3563 12 1 1.6130 2.9673 -3.7601 13 6 2.2499 2.0361 1.2033 14 7 2.6807 3.2533 1.3250 15 6 2.8434 3.7123 2.5556 16 6 2.5409 2.8551 3.5371 17 7 2.6335 3.1139 4.9102 18 16 2.0118 1.3421 2.8046 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 1.5817 1.6877 -2.0283 25 1 2.0955 3.1411 -1.1383 26 1 5.7175 2.5740 -4.0831 27 1 3.1972 4.7132 2.7544 28 1 2.9399 3.9802 5.2209 29 1 2.3875 2.4282 5.5506 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226736180.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:28 Heat of formation + Delta-G solvation = 54.596032 kcal Electronic energy + Delta-G solvation = -13560.789391 eV Core-core repulsion = 11224.967079 eV Total energy + Delta-G solvation = -2335.822312 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.76298 -36.58156 -33.94551 -32.62092 -30.52651 -28.17201 -26.42610 -23.65202 -22.89019 -21.20713 -18.85972 -18.05057 -16.83815 -16.46668 -15.46564 -14.64952 -14.45621 -14.35714 -13.81189 -13.28353 -13.25068 -12.65758 -12.25011 -11.92221 -11.44014 -11.16155 -10.98491 -10.82935 -10.53109 -10.46472 -10.10193 -9.48416 -8.76772 -8.59956 -8.53981 -8.17920 -6.27175 -6.03652 -4.01806 1.52671 1.83560 2.14062 3.32411 3.38199 3.40301 3.69606 3.80161 4.26184 4.43587 5.25091 5.29301 5.54546 5.57641 5.70796 5.97286 6.00071 6.16521 6.44666 6.59425 6.68474 6.97607 7.43777 7.64444 7.71799 7.83640 8.02099 8.55703 8.84992 9.01787 9.56370 11.09815 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.030483 B = 0.008740 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.316987 B = 3203.047427 C = 3710.825069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.561 5.561 4 C 0.233 3.767 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.361 3.639 14 N -0.511 5.511 15 C -0.014 4.014 16 C 0.020 3.980 17 N -0.856 5.856 18 S -0.009 6.009 19 H 0.054 0.946 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.030 0.970 25 H 0.038 0.962 26 H 0.264 0.736 27 H 0.157 0.843 28 H 0.400 0.600 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 -1.997 11.961 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.001 4.001 3 N -0.279 5.279 4 C 0.111 3.889 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.538 5.538 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.013 4.013 14 N -0.235 5.235 15 C -0.166 4.166 16 C -0.202 4.202 17 N -0.404 5.404 18 S 0.232 5.768 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.109 0.891 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.174 0.826 28 H 0.229 0.771 29 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.373 -2.667 11.488 15.065 hybrid contribution 0.029 1.488 -0.021 1.489 sum -9.345 -1.178 11.467 14.839 Atomic orbital electron populations 1.22267 0.96669 1.01631 1.02463 1.21403 0.93490 0.82171 1.02999 1.46268 1.67756 1.12173 1.01696 1.19697 0.97141 0.93180 0.78910 1.21387 0.95419 1.32686 1.06904 0.90752 1.24835 0.94938 0.95839 0.97324 1.69902 1.15156 1.45152 1.23568 0.86875 0.81510 0.81676 0.79759 1.19906 1.21206 1.19072 1.23949 0.98476 0.90217 0.88671 1.66358 1.23636 1.11022 1.22507 1.20836 1.09606 1.01077 0.85070 1.22588 1.11900 0.96264 0.89468 1.41183 1.79982 1.18513 1.00751 1.84510 1.72831 1.15576 1.03915 0.92734 0.92089 0.91865 0.89120 0.91897 0.95181 0.94369 0.92653 0.82585 0.77061 0.77759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.16 0.38 -1.97 15 2 C 0.12 2.07 6.14 -4.04 -0.02 2.04 15 3 N -0.56 -11.88 2.57 -175.65 -0.45 -12.33 15 4 C 0.23 5.69 4.36 -5.19 -0.02 5.66 15 5 C -0.52 -15.05 9.94 -34.44 -0.34 -15.40 15 6 H 0.07 2.37 8.06 -52.49 -0.42 1.95 15 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 15 8 N -0.90 -27.83 13.96 55.43 0.77 -27.05 15 9 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 15 10 H -0.27 -6.77 7.11 56.52 0.40 -6.36 15 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 15 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 15 13 C 0.36 7.58 7.94 -87.35 -0.69 6.88 15 14 N -0.51 -11.45 9.87 -13.69 -0.14 -11.59 15 15 C -0.01 -0.26 11.29 -18.90 -0.21 -0.48 15 16 C 0.02 0.31 7.74 -15.36 -0.12 0.20 15 17 N -0.86 -9.85 9.15 31.80 0.29 -9.56 15 18 S -0.01 -0.15 22.05 -107.50 -2.37 -2.52 15 19 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15 22 H 0.09 1.54 8.07 -51.93 -0.42 1.12 15 23 H 0.06 0.97 7.10 -51.93 -0.37 0.60 15 24 H 0.03 0.70 7.13 -51.93 -0.37 0.33 15 25 H 0.04 0.98 7.07 -51.93 -0.37 0.62 15 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 27 H 0.16 2.54 8.06 -52.49 -0.42 2.12 15 28 H 0.40 3.73 8.95 -40.82 -0.37 3.36 15 29 H 0.40 3.77 8.96 -40.82 -0.37 3.40 15 LS Contribution 265.08 15.07 3.99 3.99 Total: -1.00 -32.85 265.08 -7.24 -40.09 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.54 Total: 3.14 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.13 Total: -1.04 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.48 Total: -60.53 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.37 Total: -2.52 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.85 -7.24 -40.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226736180.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.683 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds