Wall clock time and date at job start Mon Mar 30 2020 03:13:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46497 * 109.46891 * 2 1
4 4 C 1.46496 * 120.00469 * 269.99833 * 3 2 1
5 5 C 1.50707 * 109.47045 * 270.00585 * 4 3 2
6 6 H 1.07992 * 119.99910 * 359.97438 * 5 4 3
7 7 C 1.37879 * 119.99543 * 179.97438 * 5 4 3
8 8 N 1.31515 * 119.99456 * 179.97438 * 7 5 4
9 9 Si 1.86799 * 120.00386 * 359.97438 * 7 5 4
10 10 H 1.48501 * 109.47064 * 89.99890 * 9 7 5
11 11 H 1.48493 * 109.47081 * 209.99844 * 9 7 5
12 12 H 1.48497 * 109.46914 * 330.00197 * 9 7 5
13 13 C 1.38938 * 119.99798 * 90.00222 * 3 2 1
14 14 N 1.29694 * 125.38573 * 179.97438 * 13 3 2
15 15 C 1.32341 * 116.97949 * 180.02562 * 14 13 3
16 16 C 1.33778 * 115.60173 * 0.02562 * 15 14 13
17 17 N 1.40038 * 125.87308 * 179.97438 * 16 15 14
18 18 S 1.76137 * 125.38652 * 0.27321 * 13 3 2
19 19 H 1.08997 * 109.47334 * 300.00118 * 1 2 3
20 20 H 1.09001 * 109.47161 * 60.00231 * 1 2 3
21 21 H 1.09000 * 109.46704 * 179.97438 * 1 2 3
22 22 H 1.08997 * 109.47334 * 239.99882 * 2 1 3
23 23 H 1.09001 * 109.47161 * 119.99768 * 2 1 3
24 24 H 1.09002 * 109.46921 * 29.99812 * 4 3 2
25 25 H 1.08996 * 109.47477 * 150.00066 * 4 3 2
26 26 H 0.97001 * 120.00136 * 180.02562 * 8 7 5
27 27 H 1.07997 * 122.19865 * 180.02562 * 15 14 13
28 28 H 0.97001 * 120.00565 * 0.02663 * 17 16 15
29 29 H 0.97005 * 119.99711 * 179.74568 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2625 2.0719 -1.2686
5 6 3.6858 1.8350 -1.7037
6 1 4.3428 1.2309 -1.0958
7 6 4.1491 2.3898 -2.8779
8 7 5.3913 2.1835 -3.2573
9 14 3.0124 3.4342 -3.9298
10 1 3.1148 4.8547 -3.5090
11 1 3.4059 3.3110 -5.3563
12 1 1.6130 2.9673 -3.7601
13 6 2.2499 2.0361 1.2033
14 7 2.6807 3.2533 1.3250
15 6 2.8434 3.7123 2.5556
16 6 2.5409 2.8551 3.5371
17 7 2.6335 3.1139 4.9102
18 16 2.0118 1.3421 2.8046
19 1 -0.3634 0.5138 0.8899
20 1 -0.3633 0.5138 -0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 1.8934 -0.5138 -0.8899
23 1 1.8934 -0.5138 0.8900
24 1 1.5817 1.6877 -2.0283
25 1 2.0955 3.1411 -1.1383
26 1 5.7175 2.5740 -4.0831
27 1 3.1972 4.7132 2.7544
28 1 2.9399 3.9802 5.2209
29 1 2.3875 2.4282 5.5506
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000226736180.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:28
Heat of formation + Delta-G solvation = 30.841567 kcal
Electronic energy + Delta-G solvation = -13561.819462 eV
Core-core repulsion = 11224.967079 eV
Total energy + Delta-G solvation = -2336.852383 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 227.079 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-40.22298 -38.05402 -35.21380 -34.71269 -32.00505 -29.93538 -27.85739 -25.21896
-24.52237 -22.66269 -20.37937 -19.37449 -19.01049 -17.84561 -16.83004 -16.29786
-15.99298 -15.77797 -15.38746 -14.77998 -14.60117 -14.40317 -13.88370 -13.52914
-13.10571 -12.62152 -12.39559 -12.31543 -12.25325 -11.92017 -11.82389 -11.65610
-10.77063 -10.26468 -10.05878 -9.52098 -8.27960 -7.66702 -6.31408 0.13108
0.42277 0.72660 1.36816 1.40668 1.49058 2.25170 2.34961 2.36488
3.07248 3.17865 3.92748 4.23454 4.36982 4.54533 4.63991 4.79218
4.89039 4.97679 5.04238 5.27807 5.36761 5.52941 6.00437 6.31985
6.37896 6.53108 6.70245 6.95855 7.30694 7.43426 8.89666
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.030483 B = 0.008740 C = 0.007544
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 918.316987 B = 3203.047427 C = 3710.825069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.118 3.882
3 N -0.577 5.577
4 C 0.247 3.753
5 C -0.527 4.527
6 H 0.024 0.976
7 C 0.011 3.989
8 N -0.949 5.949
9 Si 0.947 3.053
10 H -0.275 1.275
11 H -0.279 1.279
12 H -0.238 1.238
13 C 0.315 3.685
14 N -0.553 5.553
15 C -0.058 4.058
16 C 0.043 3.957
17 N -0.833 5.833
18 S 0.059 5.941
19 H 0.054 0.946
20 H 0.053 0.947
21 H 0.094 0.906
22 H 0.081 0.919
23 H 0.074 0.926
24 H 0.046 0.954
25 H 0.024 0.976
26 H 0.266 0.734
27 H 0.169 0.831
28 H 0.414 0.586
29 H 0.410 0.590
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.393 -2.142 13.418 17.732
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.005 4.005
3 N -0.297 5.297
4 C 0.123 3.877
5 C -0.566 4.566
6 H 0.042 0.958
7 C -0.186 4.186
8 N -0.590 5.590
9 Si 0.770 3.230
10 H -0.200 1.200
11 H -0.204 1.204
12 H -0.162 1.162
13 C -0.058 4.058
14 N -0.278 5.278
15 C -0.209 4.209
16 C -0.181 4.181
17 N -0.383 5.383
18 S 0.299 5.701
19 H 0.073 0.927
20 H 0.072 0.928
21 H 0.113 0.887
22 H 0.099 0.901
23 H 0.092 0.908
24 H 0.064 0.936
25 H 0.042 0.958
26 H 0.075 0.925
27 H 0.186 0.814
28 H 0.246 0.754
29 H 0.240 0.760
Dipole moment (debyes) X Y Z Total
from point charges -11.520 -2.825 13.037 17.626
hybrid contribution 0.779 1.484 -0.204 1.688
sum -10.741 -1.341 12.833 16.789
Atomic orbital electron populations
1.22177 0.93971 1.03571 1.02137 1.21627 0.95614 0.80169 1.03087
1.46208 1.69057 1.13463 1.00934 1.19270 0.94366 0.92894 0.81164
1.21607 0.97158 1.31551 1.06284 0.95751 1.25810 0.96609 0.97262
0.98917 1.70065 1.17536 1.46918 1.24503 0.85721 0.80484 0.79146
0.77611 1.20041 1.20392 1.16165 1.24176 1.00313 0.90938 0.90398
1.66292 1.23862 1.12569 1.25103 1.20990 1.12671 1.02489 0.84752
1.22838 1.08528 0.95786 0.90976 1.41251 1.78330 1.19762 0.99002
1.84139 1.71714 1.14172 1.00025 0.92651 0.92771 0.88689 0.90091
0.90792 0.93629 0.95812 0.92460 0.81371 0.75391 0.76030
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.02 10.24 71.98 0.74 -3.29 15
2 C 0.12 3.85 6.14 86.38 0.53 4.38 15
3 N -0.58 -24.59 2.57 -709.62 -1.82 -26.41 15
4 C 0.25 12.20 4.36 85.64 0.37 12.57 15
5 C -0.53 -31.33 9.94 25.60 0.25 -31.08 15
6 H 0.02 1.64 8.06 -2.91 -0.02 1.61 15
7 C 0.01 0.68 5.47 84.66 0.46 1.14 15
8 N -0.95 -60.81 13.96 21.45 0.30 -60.51 15
9 Si 0.95 44.84 27.47 68.60 1.88 46.73 15
10 H -0.27 -13.00 7.11 99.48 0.71 -12.30 15
11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15
12 H -0.24 -10.14 6.54 99.48 0.65 -9.49 15
13 C 0.31 13.20 7.94 179.21 1.42 14.62 15
14 N -0.55 -25.11 9.87 -197.22 -1.95 -27.05 15
15 C -0.06 -2.14 11.29 83.60 0.94 -1.19 15
16 C 0.04 1.29 7.74 82.37 0.64 1.92 15
17 N -0.83 -16.28 9.15 -53.31 -0.49 -16.77 15
18 S 0.06 1.82 22.05 -56.49 -1.25 0.58 15
19 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15
20 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15
21 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15
22 H 0.08 2.74 8.07 -2.39 -0.02 2.73 15
23 H 0.07 2.19 7.10 -2.39 -0.02 2.17 15
24 H 0.05 2.09 7.13 -2.39 -0.02 2.07 15
25 H 0.02 1.24 7.07 -2.39 -0.02 1.22 15
26 H 0.27 15.87 8.31 -92.71 -0.77 15.10 15
27 H 0.17 5.42 8.06 -2.91 -0.02 5.40 15
28 H 0.41 6.28 8.95 -92.71 -0.83 5.45 15
29 H 0.41 6.09 8.96 -92.70 -0.83 5.26 15
Total: -1.00 -74.11 265.08 1.50 -72.61
By element:
Atomic # 1 Polarization: 12.29 SS G_CDS: -0.54 Total: 11.75 kcal
Atomic # 6 Polarization: -6.28 SS G_CDS: 5.36 Total: -0.92 kcal
Atomic # 7 Polarization: -126.78 SS G_CDS: -3.96 Total: -130.74 kcal
Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal
Atomic # 16 Polarization: 1.82 SS G_CDS: -1.25 Total: 0.58 kcal
Total: -74.11 1.50 -72.61 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000226736180.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.453 kcal
(2) G-P(sol) polarization free energy of solvation -74.114 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds