Wall clock time and date at job start Mon Mar 30 2020 03:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46891 * 2 1 4 4 C 1.46496 * 120.00469 * 269.99833 * 3 2 1 5 5 C 1.50707 * 109.47045 * 270.00585 * 4 3 2 6 6 H 1.07992 * 119.99910 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99543 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99456 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00386 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47064 * 89.99890 * 9 7 5 11 11 H 1.48493 * 109.47081 * 209.99844 * 9 7 5 12 12 H 1.48497 * 109.46914 * 330.00197 * 9 7 5 13 13 C 1.38938 * 119.99798 * 90.00222 * 3 2 1 14 14 N 1.29694 * 125.38573 * 179.97438 * 13 3 2 15 15 C 1.32341 * 116.97949 * 180.02562 * 14 13 3 16 16 C 1.33778 * 115.60173 * 0.02562 * 15 14 13 17 17 N 1.40038 * 125.87308 * 179.97438 * 16 15 14 18 18 S 1.76137 * 125.38652 * 0.27321 * 13 3 2 19 19 H 1.08997 * 109.47334 * 300.00118 * 1 2 3 20 20 H 1.09001 * 109.47161 * 60.00231 * 1 2 3 21 21 H 1.09000 * 109.46704 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47334 * 239.99882 * 2 1 3 23 23 H 1.09001 * 109.47161 * 119.99768 * 2 1 3 24 24 H 1.09002 * 109.46921 * 29.99812 * 4 3 2 25 25 H 1.08996 * 109.47477 * 150.00066 * 4 3 2 26 26 H 0.97001 * 120.00136 * 180.02562 * 8 7 5 27 27 H 1.07997 * 122.19865 * 180.02562 * 15 14 13 28 28 H 0.97001 * 120.00565 * 0.02663 * 17 16 15 29 29 H 0.97005 * 119.99711 * 179.74568 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1491 2.3898 -2.8779 8 7 5.3913 2.1835 -3.2573 9 14 3.0124 3.4342 -3.9298 10 1 3.1148 4.8547 -3.5090 11 1 3.4059 3.3110 -5.3563 12 1 1.6130 2.9673 -3.7601 13 6 2.2499 2.0361 1.2033 14 7 2.6807 3.2533 1.3250 15 6 2.8434 3.7123 2.5556 16 6 2.5409 2.8551 3.5371 17 7 2.6335 3.1139 4.9102 18 16 2.0118 1.3421 2.8046 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 1.5817 1.6877 -2.0283 25 1 2.0955 3.1411 -1.1383 26 1 5.7175 2.5740 -4.0831 27 1 3.1972 4.7132 2.7544 28 1 2.9399 3.9802 5.2209 29 1 2.3875 2.4282 5.5506 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226736180.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:28 Heat of formation + Delta-G solvation = 30.841567 kcal Electronic energy + Delta-G solvation = -13561.819462 eV Core-core repulsion = 11224.967079 eV Total energy + Delta-G solvation = -2336.852383 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.22298 -38.05402 -35.21380 -34.71269 -32.00505 -29.93538 -27.85739 -25.21896 -24.52237 -22.66269 -20.37937 -19.37449 -19.01049 -17.84561 -16.83004 -16.29786 -15.99298 -15.77797 -15.38746 -14.77998 -14.60117 -14.40317 -13.88370 -13.52914 -13.10571 -12.62152 -12.39559 -12.31543 -12.25325 -11.92017 -11.82389 -11.65610 -10.77063 -10.26468 -10.05878 -9.52098 -8.27960 -7.66702 -6.31408 0.13108 0.42277 0.72660 1.36816 1.40668 1.49058 2.25170 2.34961 2.36488 3.07248 3.17865 3.92748 4.23454 4.36982 4.54533 4.63991 4.79218 4.89039 4.97679 5.04238 5.27807 5.36761 5.52941 6.00437 6.31985 6.37896 6.53108 6.70245 6.95855 7.30694 7.43426 8.89666 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.030483 B = 0.008740 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.316987 B = 3203.047427 C = 3710.825069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 N -0.577 5.577 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.024 0.976 7 C 0.011 3.989 8 N -0.949 5.949 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.238 1.238 13 C 0.315 3.685 14 N -0.553 5.553 15 C -0.058 4.058 16 C 0.043 3.957 17 N -0.833 5.833 18 S 0.059 5.941 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.024 0.976 26 H 0.266 0.734 27 H 0.169 0.831 28 H 0.414 0.586 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.393 -2.142 13.418 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.297 5.297 4 C 0.123 3.877 5 C -0.566 4.566 6 H 0.042 0.958 7 C -0.186 4.186 8 N -0.590 5.590 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.162 1.162 13 C -0.058 4.058 14 N -0.278 5.278 15 C -0.209 4.209 16 C -0.181 4.181 17 N -0.383 5.383 18 S 0.299 5.701 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.113 0.887 22 H 0.099 0.901 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.186 0.814 28 H 0.246 0.754 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.520 -2.825 13.037 17.626 hybrid contribution 0.779 1.484 -0.204 1.688 sum -10.741 -1.341 12.833 16.789 Atomic orbital electron populations 1.22177 0.93971 1.03571 1.02137 1.21627 0.95614 0.80169 1.03087 1.46208 1.69057 1.13463 1.00934 1.19270 0.94366 0.92894 0.81164 1.21607 0.97158 1.31551 1.06284 0.95751 1.25810 0.96609 0.97262 0.98917 1.70065 1.17536 1.46918 1.24503 0.85721 0.80484 0.79146 0.77611 1.20041 1.20392 1.16165 1.24176 1.00313 0.90938 0.90398 1.66292 1.23862 1.12569 1.25103 1.20990 1.12671 1.02489 0.84752 1.22838 1.08528 0.95786 0.90976 1.41251 1.78330 1.19762 0.99002 1.84139 1.71714 1.14172 1.00025 0.92651 0.92771 0.88689 0.90091 0.90792 0.93629 0.95812 0.92460 0.81371 0.75391 0.76030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.29 15 2 C 0.12 3.85 6.14 86.38 0.53 4.38 15 3 N -0.58 -24.59 2.57 -709.62 -1.82 -26.41 15 4 C 0.25 12.20 4.36 85.64 0.37 12.57 15 5 C -0.53 -31.33 9.94 25.60 0.25 -31.08 15 6 H 0.02 1.64 8.06 -2.91 -0.02 1.61 15 7 C 0.01 0.68 5.47 84.66 0.46 1.14 15 8 N -0.95 -60.81 13.96 21.45 0.30 -60.51 15 9 Si 0.95 44.84 27.47 68.60 1.88 46.73 15 10 H -0.27 -13.00 7.11 99.48 0.71 -12.30 15 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 12 H -0.24 -10.14 6.54 99.48 0.65 -9.49 15 13 C 0.31 13.20 7.94 179.21 1.42 14.62 15 14 N -0.55 -25.11 9.87 -197.22 -1.95 -27.05 15 15 C -0.06 -2.14 11.29 83.60 0.94 -1.19 15 16 C 0.04 1.29 7.74 82.37 0.64 1.92 15 17 N -0.83 -16.28 9.15 -53.31 -0.49 -16.77 15 18 S 0.06 1.82 22.05 -56.49 -1.25 0.58 15 19 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.08 2.74 8.07 -2.39 -0.02 2.73 15 23 H 0.07 2.19 7.10 -2.39 -0.02 2.17 15 24 H 0.05 2.09 7.13 -2.39 -0.02 2.07 15 25 H 0.02 1.24 7.07 -2.39 -0.02 1.22 15 26 H 0.27 15.87 8.31 -92.71 -0.77 15.10 15 27 H 0.17 5.42 8.06 -2.91 -0.02 5.40 15 28 H 0.41 6.28 8.95 -92.71 -0.83 5.45 15 29 H 0.41 6.09 8.96 -92.70 -0.83 5.26 15 Total: -1.00 -74.11 265.08 1.50 -72.61 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -0.54 Total: 11.75 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.36 Total: -0.92 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -3.96 Total: -130.74 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.25 Total: 0.58 kcal Total: -74.11 1.50 -72.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226736180.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.453 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds