Wall clock time and date at job start Mon Mar 30 2020 03:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46928 * 2 1 4 4 C 1.50705 * 109.46941 * 119.99516 * 2 1 3 5 5 H 1.08008 * 119.99965 * 120.00016 * 4 2 1 6 6 C 1.37873 * 120.00465 * 300.00232 * 4 2 1 7 7 N 1.31517 * 119.99727 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47482 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47372 * 120.00034 * 8 6 4 11 11 H 1.48505 * 109.46776 * 239.99693 * 8 6 4 12 12 N 1.46495 * 109.47161 * 239.99370 * 2 1 3 13 13 C 1.46493 * 120.00359 * 300.00169 * 12 2 1 14 14 C 1.38937 * 119.99905 * 120.00179 * 12 2 1 15 15 N 1.29697 * 125.38324 * 0.04135 * 14 12 2 16 16 C 1.32343 * 116.98094 * 179.97438 * 15 14 12 17 17 C 1.33784 * 115.59657 * 359.97438 * 16 15 14 18 18 N 1.40042 * 125.87096 * 180.02562 * 17 16 15 19 19 S 1.76133 * 125.38796 * 180.02562 * 14 12 2 20 20 H 1.09003 * 109.47291 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47243 * 299.99981 * 1 2 3 22 22 H 1.08998 * 109.47157 * 60.00056 * 1 2 3 23 23 H 0.97000 * 119.99840 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.47582 * 269.99755 * 13 12 2 25 25 H 1.09002 * 109.47111 * 30.00234 * 13 12 2 26 26 H 1.09000 * 109.47236 * 149.99694 * 13 12 2 27 27 H 1.07999 * 122.20166 * 180.27160 * 16 15 14 28 28 H 0.96994 * 120.00481 * 359.97438 * 18 17 16 29 29 H 0.97006 * 119.99626 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6040 10 1 3.1471 -0.1855 4.8162 11 1 1.1676 -1.5864 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4278 14 6 2.8171 -0.0156 -2.1106 15 7 3.1935 1.2214 -2.0096 16 6 3.9567 1.6980 -2.9801 17 6 4.2519 0.8358 -3.9595 18 7 5.0391 1.1102 -5.0847 19 16 3.4791 -0.7043 -3.5904 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1615 3.4844 24 1 2.4157 -2.7378 -0.9715 25 1 0.6903 -2.3002 -0.9845 26 1 1.6237 -2.2853 -2.5000 27 1 4.3215 2.7145 -2.9789 28 1 5.4243 1.9924 -5.2038 29 1 5.1993 0.4179 -5.7451 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226742610.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:37 Heat of formation + Delta-G solvation = 55.826408 kcal Electronic energy + Delta-G solvation = -13624.586087 eV Core-core repulsion = 11288.817128 eV Total energy + Delta-G solvation = -2335.768959 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.72433 -36.48052 -33.99724 -32.70204 -29.37819 -27.74368 -25.31813 -25.09240 -23.14639 -20.85113 -18.64184 -18.06045 -16.43453 -16.27593 -15.25476 -14.70509 -14.37076 -14.23590 -13.84760 -13.05131 -12.88110 -12.57819 -11.64002 -11.50746 -11.14960 -10.98012 -10.80224 -10.71559 -10.54949 -10.19492 -10.11400 -9.17800 -8.74106 -8.54566 -8.39374 -8.12125 -6.26150 -5.98351 -4.11847 1.56914 1.87023 2.17818 3.28107 3.36180 3.39750 3.78506 3.87128 4.29956 4.42175 5.26720 5.47650 5.77578 6.00021 6.05487 6.27998 6.61737 6.78033 6.89100 7.07507 7.36657 7.47271 7.65078 7.85737 7.86963 8.07760 8.23830 8.39653 8.82924 8.97253 9.53952 11.00644 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.041666 B = 0.007337 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.857258 B = 3815.257738 C = 3914.126426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.274 3.726 3 H 0.067 0.933 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.560 5.560 13 C 0.102 3.898 14 C 0.360 3.640 15 N -0.524 5.524 16 C -0.011 4.011 17 C 0.015 3.985 18 N -0.857 5.857 19 S -0.014 6.014 20 H 0.029 0.971 21 H 0.095 0.905 22 H 0.013 0.987 23 H 0.262 0.738 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.156 0.844 28 H 0.399 0.601 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 -2.667 -11.709 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.173 3.827 3 H 0.085 0.915 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.278 5.278 13 C -0.042 4.042 14 C -0.014 4.014 15 N -0.249 5.249 16 C -0.163 4.163 17 C -0.207 4.207 18 N -0.405 5.405 19 S 0.226 5.774 20 H 0.049 0.951 21 H 0.113 0.887 22 H 0.032 0.968 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.173 0.827 28 H 0.229 0.771 29 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.299 -3.291 -11.403 12.318 hybrid contribution 0.897 0.445 0.527 1.131 sum 4.196 -2.846 -10.876 11.999 Atomic orbital electron populations 1.22146 0.98316 0.99378 1.00933 1.19031 0.90576 0.94256 0.78878 0.91475 1.21413 1.31601 1.13013 0.90251 0.92232 1.24873 0.94989 0.94998 0.98868 1.69889 1.36528 1.22626 1.23604 0.86447 0.78579 0.79608 0.82790 1.19838 1.20946 1.20986 1.46770 1.49267 1.10223 1.21563 1.21518 1.01736 0.81803 0.99097 1.24121 0.96219 0.89953 0.91093 1.66368 1.20451 1.09939 1.28182 1.20812 1.03680 1.00690 0.91122 1.22530 1.05734 0.96115 0.96293 1.41164 1.59609 1.16117 1.23643 1.84537 1.53950 1.13755 1.25116 0.95145 0.88658 0.96832 0.92775 0.93229 0.90116 0.93404 0.82660 0.77131 0.77809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.95 37.15 0.33 -3.24 15 2 C 0.27 7.00 2.71 -69.09 -0.19 6.82 15 3 H 0.07 1.95 7.15 -51.93 -0.37 1.58 15 4 C -0.52 -14.21 8.37 -34.44 -0.29 -14.50 15 5 H 0.06 1.62 7.65 -52.48 -0.40 1.21 15 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 15 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 15 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.13 15 9 H -0.27 -6.39 7.11 56.52 0.40 -5.98 15 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 12 N -0.56 -12.38 2.87 -175.86 -0.50 -12.88 15 13 C 0.10 1.84 9.69 59.84 0.58 2.42 15 14 C 0.36 7.70 7.95 -87.35 -0.69 7.01 15 15 N -0.52 -11.74 9.59 -13.69 -0.13 -11.88 15 16 C -0.01 -0.21 11.29 -18.89 -0.21 -0.42 15 17 C 0.02 0.24 7.74 -15.35 -0.12 0.12 15 18 N -0.86 -9.90 9.16 31.80 0.29 -9.61 15 19 S -0.01 -0.24 22.05 -107.50 -2.37 -2.61 15 20 H 0.03 0.67 6.66 -51.93 -0.35 0.32 15 21 H 0.09 2.49 6.07 -51.93 -0.32 2.18 15 22 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.08 1.41 6.43 -51.93 -0.33 1.08 15 26 H 0.05 0.73 7.11 -51.93 -0.37 0.37 15 27 H 0.16 2.50 8.06 -52.49 -0.42 2.07 15 28 H 0.40 3.71 8.95 -40.82 -0.37 3.35 15 29 H 0.39 3.80 8.96 -40.82 -0.37 3.44 15 LS Contribution 259.47 15.07 3.91 3.91 Total: -1.00 -30.16 259.47 -7.15 -37.32 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.27 Total: 4.12 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.68 Total: -0.11 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.28 Total: -58.76 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.37 Total: -2.61 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.16 -7.15 -37.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226742610.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.142 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds