Wall clock time and date at job start Mon Mar 30 2020 03:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46928 * 2 1 4 4 C 1.50705 * 109.46941 * 119.99516 * 2 1 3 5 5 H 1.08008 * 119.99965 * 120.00016 * 4 2 1 6 6 C 1.37873 * 120.00465 * 300.00232 * 4 2 1 7 7 N 1.31517 * 119.99727 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47482 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47372 * 120.00034 * 8 6 4 11 11 H 1.48505 * 109.46776 * 239.99693 * 8 6 4 12 12 N 1.46495 * 109.47161 * 239.99370 * 2 1 3 13 13 C 1.46493 * 120.00359 * 300.00169 * 12 2 1 14 14 C 1.38937 * 119.99905 * 120.00179 * 12 2 1 15 15 N 1.29697 * 125.38324 * 0.04135 * 14 12 2 16 16 C 1.32343 * 116.98094 * 179.97438 * 15 14 12 17 17 C 1.33784 * 115.59657 * 359.97438 * 16 15 14 18 18 N 1.40042 * 125.87096 * 180.02562 * 17 16 15 19 19 S 1.76133 * 125.38796 * 180.02562 * 14 12 2 20 20 H 1.09003 * 109.47291 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47243 * 299.99981 * 1 2 3 22 22 H 1.08998 * 109.47157 * 60.00056 * 1 2 3 23 23 H 0.97000 * 119.99840 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.47582 * 269.99755 * 13 12 2 25 25 H 1.09002 * 109.47111 * 30.00234 * 13 12 2 26 26 H 1.09000 * 109.47236 * 149.99694 * 13 12 2 27 27 H 1.07999 * 122.20166 * 180.27160 * 16 15 14 28 28 H 0.96994 * 120.00481 * 359.97438 * 18 17 16 29 29 H 0.97006 * 119.99626 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6040 10 1 3.1471 -0.1855 4.8162 11 1 1.1676 -1.5864 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4278 14 6 2.8171 -0.0156 -2.1106 15 7 3.1935 1.2214 -2.0096 16 6 3.9567 1.6980 -2.9801 17 6 4.2519 0.8358 -3.9595 18 7 5.0391 1.1102 -5.0847 19 16 3.4791 -0.7043 -3.5904 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1615 3.4844 24 1 2.4157 -2.7378 -0.9715 25 1 0.6903 -2.3002 -0.9845 26 1 1.6237 -2.2853 -2.5000 27 1 4.3215 2.7145 -2.9789 28 1 5.4243 1.9924 -5.2038 29 1 5.1993 0.4179 -5.7451 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226742610.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:37 Heat of formation + Delta-G solvation = 35.282856 kcal Electronic energy + Delta-G solvation = -13625.476922 eV Core-core repulsion = 11288.817128 eV Total energy + Delta-G solvation = -2336.659794 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21365 -38.10055 -35.40204 -34.51815 -31.26484 -29.11922 -27.26446 -26.64787 -24.72364 -22.49580 -20.23955 -19.42042 -18.25060 -17.86076 -16.76391 -16.35300 -15.86740 -15.71454 -15.43750 -14.65046 -14.39084 -14.31563 -13.43256 -13.13955 -12.95005 -12.68970 -12.56113 -12.34601 -12.12356 -12.02871 -11.99483 -11.10114 -10.52787 -10.19727 -10.01954 -9.50004 -8.14327 -7.58518 -6.25066 0.15128 0.43551 0.74489 1.42263 1.44273 1.55381 2.28973 2.36247 2.50593 3.17919 3.20391 4.02876 4.42176 4.63799 4.65344 4.78004 4.94787 5.01187 5.13132 5.24422 5.52394 5.64978 5.90436 6.17845 6.29673 6.42302 6.62964 6.86207 6.98041 7.40541 7.48733 8.94265 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.041666 B = 0.007337 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.857258 B = 3815.257738 C = 3914.126426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.283 3.717 3 H 0.021 0.979 4 C -0.535 4.535 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.578 5.578 13 C 0.103 3.897 14 C 0.313 3.687 15 N -0.563 5.563 16 C -0.055 4.055 17 C 0.041 3.959 18 N -0.834 5.834 19 S 0.055 5.945 20 H 0.044 0.956 21 H 0.069 0.931 22 H 0.019 0.981 23 H 0.264 0.736 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.170 0.830 28 H 0.414 0.586 29 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.792 -3.949 -13.319 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.179 3.821 3 H 0.039 0.961 4 C -0.574 4.574 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.298 5.298 13 C -0.039 4.039 14 C -0.060 4.060 15 N -0.289 5.289 16 C -0.206 4.206 17 C -0.183 4.183 18 N -0.384 5.384 19 S 0.296 5.704 20 H 0.063 0.937 21 H 0.088 0.912 22 H 0.038 0.962 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.187 0.813 28 H 0.246 0.754 29 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.387 -4.569 -13.091 14.543 hybrid contribution 0.701 0.894 0.808 1.394 sum 5.088 -3.674 -12.283 13.793 Atomic orbital electron populations 1.21936 0.97601 0.99921 0.99912 1.18537 0.91038 0.92182 0.80304 0.96080 1.21654 1.31526 1.12894 0.91348 0.92680 1.25657 0.95170 0.95661 1.01703 1.70022 1.37449 1.23828 1.24225 0.85461 0.78184 0.78472 0.79189 1.19276 1.21123 1.20033 1.46530 1.50628 1.11379 1.21261 1.21634 1.01642 0.79815 1.00855 1.24302 0.97792 0.90640 0.93292 1.66309 1.20945 1.11425 1.30226 1.20981 1.05592 1.02069 0.91929 1.22787 1.03732 0.95621 0.96180 1.41236 1.57623 1.17498 1.22051 1.84156 1.52471 1.12413 1.21378 0.93680 0.91197 0.96185 0.92712 0.93184 0.90097 0.90723 0.81299 0.75398 0.76070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.95 71.98 0.64 -5.97 15 2 C 0.28 14.91 2.71 44.25 0.12 15.03 15 3 H 0.02 1.30 7.15 -2.39 -0.02 1.28 15 4 C -0.54 -29.60 8.37 25.60 0.21 -29.38 15 5 H 0.05 3.02 7.65 -2.91 -0.02 3.00 15 6 C 0.02 0.97 5.30 84.65 0.45 1.42 15 7 N -0.92 -52.93 11.32 21.45 0.24 -52.69 15 8 Si 0.96 43.70 29.54 68.60 2.03 45.73 15 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 10 H -0.29 -12.95 7.11 99.48 0.71 -12.24 15 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 12 N -0.58 -25.75 2.87 -710.28 -2.04 -27.78 15 13 C 0.10 3.61 9.69 127.77 1.24 4.85 15 14 C 0.31 13.34 7.95 179.21 1.42 14.77 15 15 N -0.56 -25.69 9.59 -197.21 -1.89 -27.58 15 16 C -0.06 -2.00 11.29 83.60 0.94 -1.06 15 17 C 0.04 1.22 7.74 82.37 0.64 1.86 15 18 N -0.83 -16.09 9.16 -53.31 -0.49 -16.58 15 19 S 0.06 1.72 22.05 -56.49 -1.25 0.48 15 20 H 0.04 2.01 6.66 -2.39 -0.02 1.99 15 21 H 0.07 3.78 6.07 -2.38 -0.01 3.76 15 22 H 0.02 0.90 8.14 -2.39 -0.02 0.88 15 23 H 0.26 14.41 8.31 -92.71 -0.77 13.64 15 24 H 0.05 1.71 8.14 -2.38 -0.02 1.69 15 25 H 0.08 2.77 6.43 -2.39 -0.02 2.75 15 26 H 0.07 2.14 7.11 -2.39 -0.02 2.12 15 27 H 0.17 5.36 8.06 -2.91 -0.02 5.34 15 28 H 0.41 6.14 8.95 -92.71 -0.83 5.31 15 29 H 0.41 6.03 8.96 -92.70 -0.83 5.20 15 Total: -1.00 -66.46 259.47 1.81 -64.65 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -0.47 Total: 12.25 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.67 Total: 1.52 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -4.17 Total: -124.63 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.25 Total: 0.48 kcal Total: -66.46 1.81 -64.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226742610.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.934 kcal (2) G-P(sol) polarization free energy of solvation -66.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds