Wall clock time and date at job start Mon Mar 30 2020 02:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38317 * 119.93844 * 2 1 4 4 C 1.38229 * 120.07248 * 179.76555 * 3 2 1 5 5 F 1.35102 * 120.02813 * 180.28112 * 4 3 2 6 6 C 1.39114 * 119.93861 * 0.51418 * 4 3 2 7 7 N 1.39842 * 120.06587 * 179.77148 * 6 4 3 8 8 C 1.46496 * 119.99823 * 179.72083 * 7 6 4 9 9 C 1.50706 * 109.47106 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47293 * 89.99746 * 13 11 9 15 15 H 1.48504 * 109.47104 * 209.99992 * 13 11 9 16 16 H 1.48495 * 109.47249 * 329.99739 * 13 11 9 17 17 C 1.38763 * 119.86840 * 359.48773 * 6 4 3 18 18 C 1.38401 * 119.92526 * 0.25293 * 17 6 4 19 19 F 1.35099 * 119.96813 * 179.97438 * 18 17 6 20 20 H 1.08997 * 109.47170 * 269.98161 * 1 2 3 21 21 H 1.09003 * 109.46664 * 29.97112 * 1 2 3 22 22 H 1.08990 * 109.47379 * 149.97265 * 1 2 3 23 23 H 1.08004 * 119.95848 * 0.02562 * 3 2 1 24 24 H 0.96998 * 119.99985 * 359.71350 * 7 6 4 25 25 H 1.09001 * 109.47001 * 59.99660 * 8 7 6 26 26 H 1.09000 * 109.47574 * 299.99876 * 8 7 6 27 27 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 28 28 H 1.07997 * 120.04049 * 180.27812 * 17 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1986 0.0000 4 6 3.5796 1.2018 0.0049 5 9 4.2529 2.3731 0.0106 6 6 4.2767 -0.0020 -0.0010 7 7 5.6751 -0.0018 -0.0009 8 6 6.4078 -1.2704 -0.0009 9 6 7.8894 -0.9949 -0.0014 10 1 8.2492 0.0234 -0.0013 11 6 8.7855 -2.0427 -0.0021 12 7 8.3472 -3.2827 -0.0027 13 14 10.6220 -1.7011 -0.0020 14 1 11.1088 -1.6113 1.3981 15 1 11.3303 -2.8022 -0.7027 16 1 10.8869 -0.4182 -0.7013 17 6 3.5817 -1.2030 -0.0010 18 6 2.1977 -1.1999 -0.0005 19 9 1.5202 -2.3687 -0.0010 20 1 -0.3633 -0.0003 1.0276 21 1 -0.3633 0.8903 -0.5134 22 1 -0.3633 -0.8896 -0.5142 23 1 1.6556 2.1330 0.0004 24 1 6.1600 0.8383 -0.0009 25 1 6.1445 -1.8420 -0.8909 26 1 6.1445 -1.8421 0.8890 27 1 8.9778 -4.0199 -0.0028 28 1 4.1201 -2.1392 -0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235881226.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:19 Heat of formation + Delta-G solvation = -96.484229 kcal Electronic energy + Delta-G solvation = -14991.670995 eV Core-core repulsion = 12063.164214 eV Total energy + Delta-G solvation = -2928.506781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.93136 -49.77206 -40.14464 -37.09667 -34.84683 -32.45376 -31.11983 -29.33465 -26.61578 -25.07749 -23.32556 -22.28141 -19.62733 -18.32902 -18.14500 -17.92374 -16.93870 -16.72789 -16.31111 -16.11577 -15.40657 -15.18763 -14.95732 -14.92583 -14.07474 -14.05296 -13.91712 -13.41632 -12.98397 -12.94351 -12.70571 -12.58026 -12.34414 -11.94390 -11.51054 -11.04252 -10.58193 -9.74907 -8.35379 -8.32001 -6.49850 0.03387 0.33561 1.39494 1.40586 1.51962 2.28741 2.48027 2.57587 3.00150 3.25066 3.29493 3.67792 3.92874 4.20525 4.50617 4.67644 4.83960 4.89830 4.94924 4.96585 5.11334 5.19473 5.27012 5.36338 5.46214 5.77363 5.88722 6.24003 6.59200 6.90298 7.22602 8.76241 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.039461 B = 0.006408 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.391780 B = 4368.477820 C = 5057.421113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.162 4.162 3 C -0.061 4.061 4 C -0.010 4.010 5 F -0.145 7.145 6 C 0.204 3.796 7 N -0.725 5.725 8 C 0.269 3.731 9 C -0.561 4.561 10 H 0.070 0.930 11 C 0.011 3.989 12 N -0.924 5.924 13 Si 0.979 3.021 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.263 1.263 17 C -0.233 4.233 18 C 0.132 3.868 19 F -0.139 7.139 20 H 0.081 0.919 21 H 0.093 0.907 22 H 0.065 0.935 23 H 0.178 0.822 24 H 0.402 0.598 25 H -0.001 1.001 26 H -0.001 1.001 27 H 0.271 0.729 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.964 7.786 0.017 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.165 4.165 3 C -0.080 4.080 4 C -0.034 4.034 5 F -0.124 7.124 6 C 0.095 3.905 7 N -0.350 5.350 8 C 0.146 3.854 9 C -0.599 4.599 10 H 0.088 0.912 11 C -0.189 4.189 12 N -0.562 5.562 13 Si 0.802 3.198 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.187 1.187 17 C -0.258 4.258 18 C 0.112 3.888 19 F -0.117 7.117 20 H 0.100 0.900 21 H 0.112 0.888 22 H 0.084 0.916 23 H 0.195 0.805 24 H 0.237 0.763 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.079 0.921 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.768 7.389 0.011 14.752 hybrid contribution 1.500 -0.222 0.012 1.516 sum -11.268 7.168 0.023 13.355 Atomic orbital electron populations 1.20656 0.87195 1.04111 1.03547 1.19721 0.98620 0.89705 1.08466 1.20888 0.89987 0.99779 0.97393 1.17273 0.90930 0.79138 1.16068 1.91414 1.80735 1.45196 1.95103 1.17921 0.85086 0.92764 0.94776 1.45198 1.01589 1.10038 1.78175 1.18705 0.90909 0.81288 0.94481 1.21539 0.91140 0.93987 1.53254 0.91166 1.25905 1.04805 0.94410 0.93768 1.70069 1.37040 0.99394 1.49728 0.85243 0.77670 0.78251 0.78625 1.19588 1.20423 1.18727 1.20416 0.93305 0.97580 1.14473 1.17318 0.88476 0.81661 1.01349 1.91446 1.79819 1.46724 1.93755 0.90025 0.88790 0.91595 0.80474 0.76338 0.98362 0.98367 0.92055 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.83 71.24 0.70 -1.02 15 2 C -0.16 -4.16 5.89 -19.80 -0.12 -4.28 15 3 C -0.06 -1.55 9.67 22.29 0.22 -1.33 15 4 C -0.01 -0.32 7.31 22.48 0.16 -0.16 15 5 F -0.15 -4.77 16.64 44.97 0.75 -4.03 15 6 C 0.20 7.97 6.66 38.20 0.25 8.23 15 7 N -0.73 -32.10 5.73 -342.94 -1.96 -34.06 15 8 C 0.27 14.16 4.67 85.64 0.40 14.56 15 9 C -0.56 -30.88 9.28 25.60 0.24 -30.65 15 10 H 0.07 3.67 7.60 -2.91 -0.02 3.65 15 11 C 0.01 0.63 5.46 84.65 0.46 1.09 15 12 N -0.92 -53.91 13.29 21.45 0.28 -53.63 15 13 Si 0.98 42.63 29.54 68.60 2.03 44.66 15 14 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 15 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 16 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 17 C -0.23 -9.03 9.29 22.43 0.21 -8.82 15 18 C 0.13 4.29 7.24 22.36 0.16 4.45 15 19 F -0.14 -4.46 16.46 44.97 0.74 -3.72 15 20 H 0.08 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.09 1.17 8.08 -2.39 -0.02 1.15 15 22 H 0.07 1.18 7.63 -2.39 -0.02 1.17 15 23 H 0.18 3.04 8.06 -2.91 -0.02 3.01 15 24 H 0.40 16.85 7.81 -92.71 -0.72 16.12 15 25 H 0.00 -0.08 7.95 -2.39 -0.02 -0.10 15 26 H 0.00 -0.08 7.95 -2.39 -0.02 -0.10 15 27 H 0.27 14.75 8.31 -92.71 -0.77 13.98 15 28 H 0.12 5.22 6.73 -2.91 -0.02 5.20 15 Total: -1.00 -60.54 256.53 4.99 -55.55 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.47 Total: 13.15 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 2.69 Total: -17.93 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -1.68 Total: -87.69 kcal Atomic # 9 Polarization: -9.23 SS G_CDS: 1.49 Total: -7.74 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -60.54 4.99 -55.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235881226.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.934 kcal (2) G-P(sol) polarization free energy of solvation -60.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds