Wall clock time and date at job start Mon Mar 30 2020 03:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99804 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99941 * 3 2 1 5 5 H 1.48503 * 109.47261 * 120.00122 * 3 2 1 6 6 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 7 7 C 1.38950 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99613 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99695 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00009 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00201 * 180.02562 * 10 9 7 13 13 H 1.09004 * 110.67000 * 59.30139 * 12 10 9 14 14 C 1.54888 * 110.75711 * 296.07014 * 12 10 9 15 15 C 1.54470 * 104.10043 * 203.89258 * 14 12 10 16 16 C 1.53875 * 106.68418 * 23.33846 * 15 14 12 17 17 H 1.08998 * 110.03320 * 240.87444 * 16 15 14 18 18 C 1.50700 * 110.07089 * 119.46917 * 16 15 14 19 19 O 1.20827 * 119.99792 * 242.80898 * 18 16 15 20 20 O 1.34230 * 120.00204 * 62.80476 * 18 16 15 21 21 C 1.54264 * 106.59942 * 0.15962 * 16 15 14 22 22 H 0.97001 * 119.99677 * 179.97438 * 1 2 3 23 23 H 0.96991 * 120.00558 * 0.02562 * 9 7 2 24 24 H 1.09002 * 110.48819 * 322.41544 * 14 12 10 25 25 H 1.08994 * 110.49276 * 85.06010 * 14 12 10 26 26 H 1.08998 * 109.85443 * 264.09960 * 15 14 12 27 27 H 1.08995 * 110.16236 * 142.75101 * 15 14 12 28 28 H 0.96704 * 117.00150 * 179.97438 * 20 18 16 29 29 H 1.08998 * 110.48858 * 217.71008 * 21 16 15 30 30 H 1.08997 * 110.48225 * 95.06494 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 3.1018 1.6965 1.2125 6 1 1.2831 2.7465 0.0006 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 1 0.6009 -4.9356 -0.8783 14 6 0.4176 -5.0204 1.2995 15 6 0.2334 -6.5471 1.4458 16 6 1.3784 -7.2077 0.6582 17 1 0.9726 -7.8269 -0.1418 18 6 2.2243 -8.0465 1.5811 19 8 3.3871 -7.7677 1.7551 20 8 1.6862 -9.1032 2.2099 21 6 2.2224 -6.0618 0.0630 22 1 -0.4850 -0.8401 -0.0004 23 1 0.3534 -2.3906 -0.0005 24 1 0.9675 -4.6207 2.1516 25 1 -0.5478 -4.5242 1.2007 26 1 -0.7281 -6.8456 1.0280 27 1 0.2888 -6.8333 2.4960 28 1 2.2682 -9.6112 2.7916 29 1 2.5709 -6.3237 -0.9360 30 1 3.0657 -5.8314 0.7140 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236448615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:26 Heat of formation + Delta-G solvation = -175.390983 kcal Electronic energy + Delta-G solvation = -15672.578021 eV Core-core repulsion = 12851.737102 eV Total energy + Delta-G solvation = -2820.840920 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.66427 -40.48882 -38.07372 -37.06516 -36.35944 -33.19453 -30.94468 -29.81927 -26.80074 -24.48946 -22.94432 -21.13209 -20.65044 -19.95155 -19.01751 -18.54601 -17.46951 -17.04936 -16.68879 -16.06240 -15.55513 -15.37895 -15.19599 -14.33134 -14.19303 -13.42180 -13.16656 -12.83833 -12.78602 -12.62399 -12.32150 -12.13749 -11.93762 -11.92050 -11.86106 -11.78780 -11.54428 -11.31352 -10.36820 -10.11922 -8.94099 -6.07924 1.18388 1.51368 1.53825 1.82163 1.99346 2.06458 2.42225 3.00202 3.14459 3.45445 3.47158 3.91119 4.24184 4.27085 4.33512 4.43853 4.47542 4.55039 4.69820 4.87685 5.02920 5.16804 5.24519 5.31511 5.60877 5.63081 5.95741 6.56233 6.73092 6.98883 7.43208 7.92282 8.53858 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.058209 B = 0.005797 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.912692 B = 4828.790882 C = 5089.290005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.038 4.038 3 Si 1.132 2.868 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.416 4.416 8 H 0.069 0.931 9 N -0.580 5.580 10 C 0.444 3.556 11 O -0.636 6.636 12 C -0.098 4.098 13 H 0.124 0.876 14 C -0.114 4.114 15 C -0.097 4.097 16 C -0.080 4.080 17 H 0.151 0.849 18 C 0.487 3.513 19 O -0.557 6.557 20 O -0.504 6.504 21 C -0.094 4.094 22 H 0.260 0.740 23 H 0.387 0.613 24 H 0.041 0.959 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.426 0.574 29 H 0.078 0.922 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -15.420 2.176 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.237 4.237 3 Si 0.952 3.048 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.545 4.545 8 H 0.087 0.913 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.523 6.523 12 C -0.120 4.120 13 H 0.142 0.858 14 C -0.152 4.152 15 C -0.134 4.134 16 C -0.099 4.099 17 H 0.169 0.831 18 C 0.331 3.669 19 O -0.448 6.448 20 O -0.317 6.317 21 C -0.132 4.132 22 H 0.071 0.929 23 H 0.221 0.779 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.138 0.862 27 H 0.095 0.905 28 H 0.287 0.713 29 H 0.097 0.903 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.400 -13.468 1.980 14.307 hybrid contribution 0.603 -1.831 0.425 1.974 sum -3.797 -15.299 2.405 15.946 Atomic orbital electron populations 1.70969 1.06857 1.29556 1.47802 1.27791 0.96712 1.05166 0.94045 0.82646 0.73857 0.70448 0.77823 1.19872 1.20093 1.19399 1.20540 0.93845 0.85952 1.54152 0.91313 1.41973 1.08623 1.05328 1.65822 1.20911 0.87975 0.86231 0.81579 1.90502 1.16543 1.88170 1.57087 1.22160 0.97544 0.90473 1.01784 0.85826 1.22433 1.00018 0.97933 0.94850 1.22119 0.98256 0.92187 1.00825 1.21765 0.95384 0.95219 0.97487 0.83100 1.23710 0.86154 0.78671 0.78340 1.90748 1.20802 1.70223 1.63027 1.84489 1.48346 1.40289 1.58591 1.22116 0.97302 0.92003 1.01791 0.92870 0.77883 0.93971 0.88686 0.86232 0.90487 0.71253 0.90310 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.85 13.68 21.66 0.30 -50.56 16 2 C -0.04 -2.11 5.50 84.93 0.47 -1.64 16 3 Si 1.13 49.12 29.92 68.60 2.05 51.18 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.42 -24.29 9.68 84.04 0.81 -23.48 16 8 H 0.07 4.36 7.16 -2.91 -0.02 4.34 16 9 N -0.58 -29.94 5.26 -306.98 -1.62 -31.56 16 10 C 0.44 21.82 7.09 87.66 0.62 22.44 16 11 O -0.64 -37.51 15.33 -3.07 -0.05 -37.56 16 12 C -0.10 -3.29 3.28 -10.25 -0.03 -3.33 16 13 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 14 C -0.11 -3.14 6.27 31.74 0.20 -2.94 16 15 C -0.10 -1.83 6.44 31.39 0.20 -1.63 16 16 C -0.08 -1.73 3.41 -10.82 -0.04 -1.77 16 17 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 18 C 0.49 11.93 7.37 71.24 0.53 12.45 16 19 O -0.56 -19.18 16.16 21.96 0.35 -18.82 16 20 O -0.50 -8.13 13.40 -51.42 -0.69 -8.82 16 21 C -0.09 -3.03 5.21 31.67 0.16 -2.87 16 22 H 0.26 13.94 6.77 -92.71 -0.63 13.31 16 23 H 0.39 18.02 6.73 -92.71 -0.62 17.39 16 24 H 0.04 1.40 8.04 -2.39 -0.02 1.38 16 25 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.42 7.66 -2.39 -0.02 1.40 16 28 H 0.43 3.52 9.10 -74.05 -0.67 2.85 16 29 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 2.28 6.22 -2.39 -0.01 2.27 16 Total: -1.00 -79.70 261.72 3.30 -76.40 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.02 Total: 22.51 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 2.92 Total: -2.76 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -1.32 Total: -82.11 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: -0.38 Total: -65.21 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.05 Total: 51.18 kcal Total: -79.70 3.30 -76.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236448615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.991 kcal (2) G-P(sol) polarization free energy of solvation -79.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds