Wall clock time and date at job start Mon Mar 30 2020 03:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 120.00086 * 2 1 4 4 H 1.48502 * 109.47296 * 239.99472 * 3 2 1 5 5 H 1.48498 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47098 * 119.99476 * 3 2 1 7 7 C 1.38951 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00090 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00293 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00484 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99611 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00300 * 179.97438 * 10 9 7 13 13 H 1.09006 * 110.54304 * 298.84302 * 12 10 9 14 14 C 1.54892 * 110.48722 * 61.45451 * 12 10 9 15 15 C 1.54891 * 102.74959 * 156.62211 * 14 12 10 16 16 C 1.54266 * 104.31343 * 321.99283 * 15 14 12 17 17 H 1.09004 * 110.03276 * 264.39171 * 16 15 14 18 18 C 1.50693 * 110.03608 * 142.96127 * 16 15 14 19 19 O 1.20825 * 120.00361 * 241.45838 * 18 16 15 20 20 O 1.34227 * 119.99907 * 61.45083 * 18 16 15 21 21 C 1.54224 * 106.42656 * 23.64256 * 16 15 14 22 22 H 0.96999 * 119.99799 * 0.02562 * 1 2 3 23 23 H 0.96998 * 119.99555 * 359.97438 * 9 7 2 24 24 H 1.09000 * 110.75513 * 38.31071 * 14 12 10 25 25 H 1.09002 * 110.91731 * 275.00868 * 14 12 10 26 26 H 1.09002 * 110.48740 * 80.73781 * 15 14 12 27 27 H 1.08998 * 110.48604 * 203.24665 * 15 14 12 28 28 H 0.96705 * 117.00335 * 180.02562 * 20 18 16 29 29 H 1.09009 * 110.00234 * 240.69061 * 21 16 15 30 30 H 1.08998 * 110.06034 * 119.30842 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0011 13 1 0.6264 -4.9478 0.8955 14 6 0.3717 -4.9860 -1.2731 15 6 0.1867 -6.5174 -1.4141 16 6 1.5498 -7.1063 -0.9959 17 1 2.1633 -7.2907 -1.8779 18 6 1.3456 -8.3887 -0.2313 19 8 1.7224 -8.4762 0.9133 20 8 0.7447 -9.4337 -0.8218 21 6 2.2224 -6.0515 -0.0939 22 1 -0.4850 0.8401 -0.0004 23 1 0.3534 -2.3907 0.0005 24 1 0.8935 -4.5787 -2.1391 25 1 -0.5901 -4.4918 -1.1357 26 1 -0.6013 -6.8694 -0.7483 27 1 -0.0419 -6.7805 -2.4468 28 1 0.6356 -10.2348 -0.2912 29 1 3.1631 -5.7260 -0.5384 30 1 2.4024 -6.4674 0.8974 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236452379.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:28 Heat of formation + Delta-G solvation = -173.757847 kcal Electronic energy + Delta-G solvation = -15606.379978 eV Core-core repulsion = 12785.609877 eV Total energy + Delta-G solvation = -2820.770101 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.61063 -40.36803 -37.93319 -37.00715 -35.97347 -33.31098 -30.93625 -29.71914 -27.03884 -24.41394 -22.65855 -21.17786 -20.33506 -19.71238 -19.11331 -18.15328 -17.67945 -16.88931 -16.58641 -15.87941 -15.64945 -15.17102 -14.95678 -14.33162 -14.07943 -13.60207 -13.02006 -12.86504 -12.74007 -12.54276 -12.45689 -12.30448 -12.18644 -12.04382 -11.73100 -11.64865 -11.51639 -11.33998 -10.29108 -10.02314 -8.46942 -5.96062 1.21981 1.39781 1.42000 1.52959 2.03717 2.12771 2.30379 3.12721 3.19853 3.51895 3.57934 4.01396 4.29873 4.37574 4.47125 4.50946 4.55202 4.62981 4.80480 5.01720 5.11224 5.24818 5.27770 5.34485 5.40931 5.65679 5.99581 6.58648 7.03550 7.11241 7.55554 8.10582 8.70128 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.065829 B = 0.005582 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.239216 B = 5014.503992 C = 5241.078108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.566 5.566 10 C 0.443 3.557 11 O -0.637 6.637 12 C -0.101 4.101 13 H 0.098 0.902 14 C -0.110 4.110 15 C -0.094 4.094 16 C -0.083 4.083 17 H 0.133 0.867 18 C 0.495 3.505 19 O -0.552 6.552 20 O -0.504 6.504 21 C -0.101 4.101 22 H 0.279 0.721 23 H 0.397 0.603 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.427 0.573 29 H 0.070 0.930 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -14.008 -4.368 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.201 5.201 10 C 0.231 3.769 11 O -0.525 6.525 12 C -0.122 4.122 13 H 0.116 0.884 14 C -0.148 4.148 15 C -0.131 4.131 16 C -0.102 4.102 17 H 0.150 0.850 18 C 0.339 3.661 19 O -0.443 6.443 20 O -0.317 6.317 21 C -0.139 4.139 22 H 0.088 0.912 23 H 0.232 0.768 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.127 0.873 28 H 0.289 0.711 29 H 0.089 0.911 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.535 -13.522 -4.295 14.621 hybrid contribution 0.087 0.455 0.708 0.846 sum -3.448 -13.067 -3.587 13.983 Atomic orbital electron populations 1.69661 1.06811 1.29447 1.49927 1.26030 0.96538 1.02357 0.96061 0.84997 0.77800 0.76645 0.78938 1.19586 1.19335 1.19882 1.19672 0.92740 0.84174 1.50314 0.90407 1.41918 1.09334 1.04596 1.64297 1.20772 0.87921 0.86236 0.81931 1.90464 1.16195 1.88087 1.57787 1.21967 0.97493 0.91222 1.01517 0.88421 1.22509 0.99553 0.97304 0.95391 1.22283 0.93712 0.93002 1.04103 1.21756 1.00988 0.88298 0.99159 0.84956 1.23452 0.72180 0.85596 0.84908 1.90703 1.49246 1.83500 1.20839 1.84501 1.72358 1.25375 1.49471 1.22038 0.98468 0.92675 1.00720 0.91193 0.76849 0.91507 0.89429 0.89948 0.87289 0.71145 0.91130 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.44 5.23 -306.99 -1.60 -31.04 16 10 C 0.44 21.64 7.10 87.65 0.62 22.26 16 11 O -0.64 -36.25 15.03 -3.08 -0.05 -36.29 16 12 C -0.10 -3.57 3.25 -10.47 -0.03 -3.61 16 13 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 14 C -0.11 -3.02 6.26 31.89 0.20 -2.82 16 15 C -0.09 -1.87 6.32 31.67 0.20 -1.67 16 16 C -0.08 -1.94 3.42 -10.70 -0.04 -1.97 16 17 H 0.13 2.55 8.14 -2.38 -0.02 2.53 16 18 C 0.49 11.47 7.48 71.23 0.53 12.00 16 19 O -0.55 -17.10 15.99 21.97 0.35 -16.75 16 20 O -0.50 -7.74 13.39 -51.39 -0.69 -8.43 16 21 C -0.10 -3.35 5.76 31.44 0.18 -3.17 16 22 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 23 H 0.40 19.54 7.88 -92.71 -0.73 18.81 16 24 H 0.07 1.99 8.05 -2.39 -0.02 1.97 16 25 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.08 1.49 7.85 -2.39 -0.02 1.47 16 27 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.43 2.94 9.10 -74.05 -0.67 2.27 16 29 H 0.07 2.67 6.90 -2.38 -0.02 2.65 16 30 H 0.07 2.58 6.42 -2.39 -0.02 2.57 16 Total: -1.00 -72.18 262.58 3.05 -69.13 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.22 Total: 25.25 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 2.95 Total: 2.29 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.32 Total: -80.19 kcal Atomic # 8 Polarization: -61.09 SS G_CDS: -0.38 Total: -61.47 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -72.18 3.05 -69.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236452379.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.628 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds