Wall clock time and date at job start Mon Mar 30 2020 03:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46890 * 109.47259 * 2 1 4 4 C 1.50706 * 109.46743 * 120.00168 * 2 1 3 5 5 H 1.08007 * 119.99675 * 120.00015 * 4 2 1 6 6 C 1.37866 * 119.99976 * 300.00048 * 4 2 1 7 7 N 1.31515 * 120.00526 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99954 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46981 * 59.99732 * 8 6 4 10 10 H 1.48504 * 109.47102 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46725 * 299.99555 * 8 6 4 12 12 C 1.50701 * 109.47133 * 239.99773 * 2 1 3 13 13 C 1.38208 * 119.97603 * 269.98043 * 12 2 1 14 14 C 1.38476 * 120.02410 * 179.97438 * 13 12 2 15 15 F 1.35101 * 120.01215 * 180.29629 * 14 13 12 16 16 C 1.38425 * 119.97328 * 0.02562 * 14 13 12 17 17 C 1.38412 * 119.95050 * 359.97438 * 16 14 13 18 18 F 1.35097 * 120.01227 * 180.02562 * 17 16 14 19 19 C 1.38206 * 119.97054 * 90.00092 * 12 2 1 20 20 H 1.08999 * 109.47146 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.47180 * 299.99689 * 1 2 3 22 22 H 1.09001 * 109.46903 * 60.00169 * 1 2 3 23 23 H 1.00901 * 111.00050 * 56.04851 * 3 2 1 24 24 H 1.00895 * 111.00118 * 179.97438 * 3 2 1 25 25 H 0.97003 * 120.00596 * 180.02562 * 7 6 4 26 26 H 1.08001 * 119.98837 * 0.02562 * 13 12 2 27 27 H 1.08000 * 120.02498 * 179.97438 * 16 14 13 28 28 H 1.07994 * 119.99231 * 0.02562 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1198 4.0080 9 1 3.8073 -1.1192 4.0078 10 1 1.8277 -0.4195 5.2205 11 1 1.8278 -2.5200 4.0081 12 6 2.0324 -0.7105 -1.2304 13 6 2.2630 -2.0727 -1.1955 14 6 2.7240 -2.7266 -2.3257 15 9 2.9436 -4.0593 -2.2930 16 6 2.9545 -2.0153 -3.4906 17 6 2.7232 -0.6510 -3.5244 18 9 2.9473 0.0444 -4.6608 19 6 2.2625 0.0009 -2.3928 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6443 1.9012 0.7814 24 1 3.0283 1.4118 0.0004 25 1 0.7094 1.1617 3.4845 26 1 2.0827 -2.6276 -0.2866 27 1 3.3145 -2.5244 -4.3724 28 1 2.0828 1.0654 -2.4188 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238420730.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:18 Heat of formation + Delta-G solvation = -85.418566 kcal Electronic energy + Delta-G solvation = -15582.163636 eV Core-core repulsion = 12654.136697 eV Total energy + Delta-G solvation = -2928.026938 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.94601 -49.91509 -40.21699 -37.05730 -33.60813 -31.42860 -30.89937 -29.09587 -27.27203 -24.46881 -23.59787 -21.27405 -18.88490 -18.34144 -17.69693 -17.18012 -16.90215 -16.68673 -16.38089 -16.24810 -15.81416 -15.23382 -14.95318 -14.56965 -13.57962 -13.53202 -13.08774 -13.01743 -12.82801 -12.62875 -12.52986 -12.28096 -12.09491 -11.67212 -11.44709 -10.60711 -9.73709 -9.62085 -9.12028 -8.05635 -6.29157 0.10901 0.17076 1.41401 1.44688 1.49734 2.39070 2.54971 2.91992 3.12265 3.50412 3.75926 3.98673 4.13472 4.45339 4.50352 4.86389 4.88859 5.08019 5.10734 5.15513 5.17720 5.45725 5.62175 5.76750 5.88660 5.98508 6.18695 6.70268 6.97720 7.16256 7.46699 8.86795 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.009210 C = 0.007656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.957550 B = 3039.601993 C = 3656.173470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.259 3.741 3 N -0.837 5.837 4 C -0.560 4.560 5 H 0.056 0.944 6 C 0.034 3.966 7 N -0.903 5.903 8 Si 0.947 3.053 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.001 3.999 13 C -0.161 4.161 14 C 0.115 3.885 15 F -0.138 7.138 16 C -0.198 4.198 17 C 0.117 3.883 18 F -0.136 7.136 19 C -0.151 4.151 20 H 0.030 0.970 21 H 0.068 0.932 22 H 0.030 0.970 23 H 0.350 0.650 24 H 0.318 0.682 25 H 0.265 0.735 26 H 0.136 0.864 27 H 0.166 0.834 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.512 -3.201 -7.764 8.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.167 3.833 3 N -0.366 5.366 4 C -0.600 4.600 5 H 0.074 0.926 6 C -0.167 4.167 7 N -0.542 5.542 8 Si 0.774 3.226 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.000 4.000 13 C -0.180 4.180 14 C 0.095 3.905 15 F -0.117 7.117 16 C -0.217 4.217 17 C 0.097 3.903 18 F -0.114 7.114 19 C -0.170 4.170 20 H 0.049 0.951 21 H 0.086 0.914 22 H 0.049 0.951 23 H 0.165 0.835 24 H 0.127 0.873 25 H 0.075 0.925 26 H 0.153 0.847 27 H 0.184 0.816 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.040 -3.025 -8.369 9.130 hybrid contribution 0.711 -0.789 1.853 2.136 sum 2.751 -3.815 -6.517 8.036 Atomic orbital electron populations 1.21601 0.96050 0.99143 1.00630 1.17310 0.92104 0.86410 0.87455 1.59390 1.11714 1.14241 1.51226 1.22133 1.32258 1.13565 0.91994 0.92584 1.25505 0.94531 0.95565 1.01080 1.69754 1.36650 1.23365 1.24383 0.85788 0.78509 0.78842 0.79473 1.20332 1.21113 1.20225 1.20010 0.92421 0.92411 0.95190 1.21296 1.02839 0.95721 0.98126 1.17289 1.01275 0.77442 0.94457 1.91478 1.92571 1.30527 1.97083 1.20988 1.08150 0.93095 0.99463 1.17294 1.01028 0.89385 0.82559 1.91485 1.92448 1.79063 1.48415 1.21223 1.02384 1.02234 0.91131 0.95054 0.91370 0.95122 0.83495 0.87273 0.92508 0.84655 0.81597 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.49 71.98 0.61 -4.65 15 2 C 0.26 11.62 0.76 2.04 0.00 11.62 15 3 N -0.84 -36.37 7.72 -157.51 -1.22 -37.59 15 4 C -0.56 -27.53 7.55 25.60 0.19 -27.33 15 5 H 0.06 2.76 6.03 -2.91 -0.02 2.74 15 6 C 0.03 1.70 5.22 84.65 0.44 2.14 15 7 N -0.90 -45.64 9.57 21.44 0.21 -45.43 15 8 Si 0.95 40.60 29.54 68.60 2.03 42.63 15 9 H -0.28 -11.87 7.11 99.48 0.71 -11.17 15 10 H -0.29 -12.14 7.11 99.48 0.71 -11.43 15 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 15 12 C 0.00 0.03 4.78 -19.88 -0.10 -0.07 15 13 C -0.16 -6.10 8.86 22.32 0.20 -5.91 15 14 C 0.11 3.80 7.30 22.37 0.16 3.96 15 15 F -0.14 -4.41 17.27 44.97 0.78 -3.63 15 16 C -0.20 -5.83 10.01 22.36 0.22 -5.60 15 17 C 0.12 3.70 7.30 22.37 0.16 3.87 15 18 F -0.14 -4.07 17.27 44.97 0.78 -3.29 15 19 C -0.15 -5.39 9.30 22.32 0.21 -5.18 15 20 H 0.03 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.07 3.37 6.07 -2.39 -0.01 3.36 15 22 H 0.03 1.27 8.14 -2.39 -0.02 1.26 15 23 H 0.35 16.43 6.99 -89.69 -0.63 15.80 15 24 H 0.32 13.44 8.98 -89.70 -0.81 12.64 15 25 H 0.27 13.04 8.31 -92.71 -0.77 12.26 15 26 H 0.14 5.42 6.42 -2.91 -0.02 5.40 15 27 H 0.17 3.87 8.06 -2.91 -0.02 3.84 15 28 H 0.15 5.24 7.40 -2.91 -0.02 5.22 15 Total: -1.00 -48.77 246.81 4.46 -44.31 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.22 Total: 30.16 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 2.11 Total: -27.15 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.01 Total: -83.02 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 1.55 Total: -6.93 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -48.77 4.46 -44.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238420730.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.110 kcal (2) G-P(sol) polarization free energy of solvation -48.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds