Wall clock time and date at job start Mon Mar 30 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46890 * 109.47416 * 2 1 4 4 C 1.50710 * 109.46563 * 119.99820 * 2 1 3 5 5 H 1.07997 * 119.99723 * 119.99963 * 4 2 1 6 6 C 1.37878 * 119.99897 * 299.99279 * 4 2 1 7 7 N 1.31516 * 119.99812 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99883 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46824 * 120.00337 * 8 6 4 11 11 H 1.48493 * 109.47499 * 240.00257 * 8 6 4 12 12 C 1.50696 * 109.47268 * 239.99079 * 2 1 3 13 13 C 1.38256 * 119.99665 * 119.99835 * 12 2 1 14 14 C 1.38219 * 120.06906 * 179.70246 * 13 12 2 15 15 C 1.38252 * 120.07109 * 0.28343 * 14 13 12 16 16 C 1.38371 * 120.00020 * 359.97438 * 15 14 13 17 17 F 1.35102 * 120.03265 * 180.02562 * 16 15 14 18 18 C 1.38370 * 120.00667 * 300.25995 * 12 2 1 19 19 F 1.35099 * 120.03233 * 359.97438 * 18 12 2 20 20 H 1.09002 * 109.47671 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47539 * 300.00585 * 1 2 3 22 22 H 1.09003 * 109.46969 * 60.00485 * 1 2 3 23 23 H 1.00897 * 111.00825 * 56.04196 * 3 2 1 24 24 H 1.00902 * 111.00207 * 179.97438 * 3 2 1 25 25 H 0.96997 * 119.99442 * 179.97438 * 7 6 4 26 26 H 1.08002 * 119.96773 * 359.97438 * 13 12 2 27 27 H 1.07997 * 119.96125 * 180.30255 * 14 13 12 28 28 H 1.08004 * 120.00111 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3222 -1.1194 4.0081 9 1 3.1480 -2.2856 3.6040 10 1 3.1471 -0.1855 4.8162 11 1 1.1676 -1.5863 4.8167 12 6 2.0323 -0.7106 -1.2303 13 6 2.8272 -0.0387 -2.1404 14 6 3.2938 -0.6908 -3.2663 15 6 2.9620 -2.0145 -3.4876 16 6 2.1623 -2.6882 -2.5814 17 9 1.8380 -3.9819 -2.7968 18 6 1.6937 -2.0338 -1.4519 19 9 0.9132 -2.6896 -0.5655 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.6442 1.9013 0.7813 24 1 3.0283 1.4118 0.0004 25 1 0.7082 1.1611 3.4843 26 1 3.0874 0.9954 -1.9693 27 1 3.9186 -0.1657 -3.9736 28 1 3.3269 -2.5228 -4.3679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238421220.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:22 Heat of formation + Delta-G solvation = -82.704434 kcal Electronic energy + Delta-G solvation = -15980.573398 eV Core-core repulsion = 13052.664153 eV Total energy + Delta-G solvation = -2927.909245 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.31390 -49.38395 -40.06405 -37.21989 -33.67551 -31.29367 -30.74411 -29.23114 -27.31561 -24.41143 -23.42237 -21.30743 -18.82542 -18.59902 -17.87534 -17.50892 -17.11023 -16.72262 -16.08995 -15.82007 -15.34208 -15.27226 -14.95571 -14.33241 -13.67048 -13.47544 -13.25795 -13.02778 -12.85197 -12.69224 -12.58937 -12.33444 -12.05648 -11.75511 -11.34479 -10.66680 -9.64177 -9.55228 -9.15158 -8.09693 -6.32969 0.13102 0.28037 1.32705 1.37808 1.46983 2.35369 2.65513 2.98774 3.07076 3.55946 3.84967 4.09776 4.25818 4.35856 4.52960 4.86583 4.99917 5.05054 5.08419 5.18930 5.33744 5.52542 5.57107 5.73502 5.86650 6.01935 6.12726 6.64138 6.93348 7.14227 7.42038 8.82429 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.010371 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.707673 B = 2699.291096 C = 3078.792354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.262 3.738 3 N -0.831 5.831 4 C -0.546 4.546 5 H 0.033 0.967 6 C 0.034 3.966 7 N -0.902 5.902 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.283 1.283 12 C -0.069 4.069 13 C -0.100 4.100 14 C -0.089 4.089 15 C -0.134 4.134 16 C 0.038 3.962 17 F -0.145 7.145 18 C 0.036 3.964 19 F -0.145 7.145 20 H 0.027 0.973 21 H 0.067 0.933 22 H 0.027 0.973 23 H 0.349 0.651 24 H 0.322 0.678 25 H 0.267 0.733 26 H 0.155 0.845 27 H 0.181 0.819 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.814 -1.143 -10.047 11.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.170 3.830 3 N -0.361 5.361 4 C -0.585 4.585 5 H 0.052 0.948 6 C -0.167 4.167 7 N -0.541 5.541 8 Si 0.773 3.227 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.209 1.209 12 C -0.070 4.070 13 C -0.118 4.118 14 C -0.107 4.107 15 C -0.152 4.152 16 C 0.018 3.982 17 F -0.124 7.124 18 C 0.016 3.984 19 F -0.123 7.123 20 H 0.046 0.954 21 H 0.086 0.914 22 H 0.046 0.954 23 H 0.165 0.835 24 H 0.132 0.868 25 H 0.076 0.924 26 H 0.172 0.828 27 H 0.198 0.802 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.289 -1.025 -10.577 11.460 hybrid contribution 0.089 -1.344 2.410 2.761 sum 4.377 -2.368 -8.167 9.564 Atomic orbital electron populations 1.21653 0.96877 0.99064 1.00368 1.17162 0.91739 0.86702 0.87387 1.59438 1.11851 1.13638 1.51153 1.21863 1.31880 1.12553 0.92252 0.94849 1.25474 0.94616 0.95662 1.00942 1.69756 1.36632 1.23380 1.24327 0.85689 0.78126 0.78699 0.80151 1.20681 1.19829 1.20861 1.20478 0.97108 0.91313 0.98130 1.21383 0.95821 1.01623 0.92995 1.21517 0.98786 0.93126 0.97263 1.21340 0.98340 0.95952 0.99574 1.18000 1.03710 0.79596 0.96904 1.91440 1.91725 1.34452 1.94744 1.17978 0.98507 0.92352 0.89570 1.91422 1.72444 1.80822 1.67646 0.95414 0.91412 0.95400 0.83524 0.86813 0.92369 0.82755 0.80210 0.80787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.30 71.98 0.60 -5.45 15 2 C 0.26 12.58 0.65 2.04 0.00 12.58 15 3 N -0.83 -36.53 7.73 -157.52 -1.22 -37.75 15 4 C -0.55 -29.28 7.22 25.60 0.18 -29.10 15 5 H 0.03 1.89 7.61 -2.91 -0.02 1.87 15 6 C 0.03 1.78 5.22 84.65 0.44 2.23 15 7 N -0.90 -47.69 9.57 21.45 0.21 -47.48 15 8 Si 0.95 43.29 29.54 68.60 2.03 45.32 15 9 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 12 C -0.07 -2.91 4.73 -19.83 -0.09 -3.00 15 13 C -0.10 -3.28 9.17 22.27 0.20 -3.08 15 14 C -0.09 -2.19 10.04 22.27 0.22 -1.96 15 15 C -0.13 -3.51 10.02 22.30 0.22 -3.29 15 16 C 0.04 1.35 7.31 22.41 0.16 1.52 15 17 F -0.14 -5.22 17.18 44.97 0.77 -4.45 15 18 C 0.04 1.57 6.70 22.41 0.15 1.72 15 19 F -0.14 -7.08 14.29 44.97 0.64 -6.44 15 20 H 0.03 1.39 6.29 -2.39 -0.02 1.38 15 21 H 0.07 3.61 6.07 -2.39 -0.01 3.60 15 22 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.35 16.73 7.00 -89.70 -0.63 16.10 15 24 H 0.32 13.16 8.04 -89.69 -0.72 12.44 15 25 H 0.27 13.49 8.31 -92.71 -0.77 12.72 15 26 H 0.15 4.70 6.50 -2.91 -0.02 4.68 15 27 H 0.18 2.66 8.06 -2.91 -0.02 2.64 15 28 H 0.17 3.15 8.06 -2.91 -0.02 3.12 15 Total: -1.00 -59.10 243.08 4.39 -54.70 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.14 Total: 23.93 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 2.10 Total: -27.83 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.01 Total: -85.23 kcal Atomic # 9 Polarization: -12.31 SS G_CDS: 1.42 Total: -10.89 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -59.10 4.39 -54.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238421220.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.000 kcal (2) G-P(sol) polarization free energy of solvation -59.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds