Wall clock time and date at job start Mon Mar 30 2020 02:55:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.37748 * 119.49849 * 2 1
4 4 C 1.41031 * 118.85769 * 179.97438 * 3 2 1
5 5 C 1.41509 * 121.02711 * 179.97438 * 4 3 2
6 6 H 1.07994 * 119.99803 * 148.17951 * 5 4 3
7 7 C 1.40048 * 120.00062 * 328.18418 * 5 4 3
8 8 N 1.30731 * 119.99818 * 350.62028 * 7 5 4
9 9 Si 1.86797 * 120.00034 * 170.62127 * 7 5 4
10 10 H 1.48499 * 109.47074 * 59.99864 * 9 7 5
11 11 H 1.48503 * 109.47422 * 179.97438 * 9 7 5
12 12 H 1.48503 * 109.47235 * 299.99714 * 9 7 5
13 13 C 1.41066 * 117.94247 * 0.02562 * 4 3 2
14 14 C 1.50698 * 120.56904 * 179.97438 * 13 4 3
15 15 F 1.39898 * 109.47217 * 218.53964 * 14 13 4
16 16 F 1.39898 * 109.47529 * 338.54378 * 14 13 4
17 17 C 1.37691 * 118.85986 * 0.02562 * 13 4 3
18 18 C 1.50710 * 119.49364 * 180.02562 * 17 13 4
19 19 N 1.32012 * 119.49450 * 179.97438 * 2 1 3
20 20 H 1.09000 * 109.46864 * 270.02014 * 1 2 3
21 21 H 1.08997 * 109.47130 * 30.01628 * 1 2 3
22 22 H 1.08995 * 109.47107 * 150.01528 * 1 2 3
23 23 H 1.07995 * 120.56998 * 0.02562 * 3 2 1
24 24 H 0.97003 * 119.99617 * 180.02562 * 8 7 5
25 25 H 1.08999 * 109.46806 * 98.54030 * 14 13 4
26 26 H 1.08999 * 109.46593 * 269.99349 * 18 17 13
27 27 H 1.08997 * 109.46789 * 29.99798 * 18 17 13
28 28 H 1.08995 * 109.46782 * 149.99892 * 18 17 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1853 1.1989 0.0000
4 6 3.5955 1.1831 0.0006
5 6 4.3384 2.3875 0.0000
6 1 5.2981 2.4302 0.4935
7 6 3.8291 3.5242 -0.6403
8 7 2.7626 3.4291 -1.3903
9 14 4.6738 5.1760 -0.4228
10 1 6.0727 5.0849 -0.9125
11 1 3.9446 6.2109 -1.1990
12 1 4.6758 5.5453 1.0156
13 6 4.2425 -0.0704 0.0005
14 6 5.7470 -0.1563 0.0005
15 9 6.1538 -1.2128 -0.8213
16 9 6.2827 1.0427 -0.4819
17 6 3.4758 -1.2141 -0.0006
18 6 4.1522 -2.5608 0.0000
19 7 2.1569 -1.1490 0.0005
20 1 -0.3633 0.0004 1.0277
21 1 -0.3633 0.8898 -0.5141
22 1 -0.3633 -0.8901 -0.5136
23 1 1.6464 2.1348 0.0004
24 1 2.4101 4.2163 -1.8342
25 1 6.1010 -0.3294 1.0168
26 1 4.3163 -2.8853 -1.0276
27 1 5.1100 -2.4861 0.5149
28 1 3.5194 -3.2850 0.5129
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238468927.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:23
Heat of formation + Delta-G solvation = -86.562061 kcal
Electronic energy + Delta-G solvation = -15896.815083 eV
Core-core repulsion = 12968.738559 eV
Total energy + Delta-G solvation = -2928.076524 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-48.01588 -46.02194 -38.67960 -34.26246 -32.84962 -31.08587 -28.30802 -27.02195
-25.83411 -23.38105 -20.83606 -20.11081 -17.26488 -16.58199 -16.42101 -15.66774
-15.25267 -14.43648 -13.88808 -13.53881 -12.88562 -12.79432 -12.68399 -12.57908
-12.39303 -11.89529 -11.71945 -11.45235 -11.30254 -11.07084 -11.02283 -10.95777
-10.45783 -10.20453 -9.70890 -9.40325 -8.07969 -8.03487 -7.46866 -6.87462
-4.65617 2.42971 2.74307 3.01031 3.04307 3.17880 3.84950 4.54379
4.78183 5.24764 5.34909 5.51397 5.78823 5.94527 5.99219 6.08719
6.18633 6.27837 6.40391 6.50252 6.56965 6.89797 6.96493 7.11304
7.24395 7.39659 7.72974 7.98118 8.34070 8.60688 8.65608 9.48469
10.05708
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.023327 B = 0.013186 C = 0.008756
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1200.026104 B = 2122.929632 C = 3197.176902
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.090 4.090
2 C 0.116 3.884
3 C -0.202 4.202
4 C 0.155 3.845
5 C -0.443 4.443
6 H 0.095 0.905
7 C 0.075 3.925
8 N -0.790 5.790
9 Si 0.916 3.084
10 H -0.262 1.262
11 H -0.277 1.277
12 H -0.262 1.262
13 C -0.336 4.336
14 C 0.337 3.663
15 F -0.218 7.218
16 F -0.191 7.191
17 C 0.169 3.831
18 C -0.095 4.095
19 N -0.569 5.569
20 H 0.059 0.941
21 H 0.063 0.937
22 H 0.060 0.940
23 H 0.126 0.874
24 H 0.284 0.716
25 H 0.090 0.910
26 H 0.067 0.933
27 H 0.063 0.937
28 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.614 -1.957 2.696 3.702
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.014 4.014
3 C -0.224 4.224
4 C 0.147 3.853
5 C -0.473 4.473
6 H 0.113 0.887
7 C -0.145 4.145
8 N -0.415 5.415
9 Si 0.740 3.260
10 H -0.186 1.186
11 H -0.202 1.202
12 H -0.187 1.187
13 C -0.342 4.342
14 C 0.283 3.717
15 F -0.199 7.199
16 F -0.172 7.172
17 C 0.031 3.969
18 C -0.153 4.153
19 N -0.285 5.285
20 H 0.078 0.922
21 H 0.082 0.918
22 H 0.079 0.921
23 H 0.144 0.856
24 H 0.095 0.905
25 H 0.107 0.893
26 H 0.086 0.914
27 H 0.082 0.918
28 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 0.947 -2.567 2.506 3.710
hybrid contribution 0.856 1.677 -0.211 1.895
sum 1.802 -0.889 2.295 3.051
Atomic orbital electron populations
1.20507 0.91334 1.01720 1.01158 1.20733 0.95206 0.89212 0.96263
1.21961 0.94578 0.97420 1.08435 1.17511 0.91972 0.90992 0.84792
1.19927 1.04731 0.93273 1.29397 0.88693 1.25994 0.94257 1.01153
0.93051 1.69741 1.19057 1.31960 1.20762 0.86218 0.80336 0.79823
0.79593 1.18629 1.20215 1.18672 1.20827 0.93082 0.95765 1.24562
1.19789 0.90815 0.71133 0.89950 1.92893 1.92069 1.58282 1.76680
1.92969 1.87508 1.46518 1.90255 1.20219 0.89643 0.93333 0.93732
1.20719 0.98893 0.93662 1.02008 1.67095 1.08476 1.29044 1.23904
0.92219 0.91827 0.92109 0.85579 0.90506 0.89269 0.91416 0.91827
0.92145
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.70 10.16 36.01 0.37 -1.34 15
2 C 0.12 2.76 6.77 -82.69 -0.56 2.20 15
3 C -0.20 -5.16 8.36 -38.70 -0.32 -5.48 15
4 C 0.16 4.07 5.53 -106.52 -0.59 3.48 15
5 C -0.44 -11.39 7.29 -37.66 -0.27 -11.66 15
6 H 0.10 2.35 6.17 -52.49 -0.32 2.03 15
7 C 0.07 1.83 5.29 -17.34 -0.09 1.74 15
8 N -0.79 -19.96 11.06 55.55 0.61 -19.35 15
9 Si 0.92 18.40 29.57 -169.99 -5.03 13.37 15
10 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15
11 H -0.28 -5.40 7.11 56.52 0.40 -5.00 15
12 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15
13 C -0.34 -8.14 5.79 -103.75 -0.60 -8.75 15
14 C 0.34 7.11 4.84 36.00 0.17 7.29 15
15 F -0.22 -4.43 14.53 2.25 0.03 -4.40 15
16 F -0.19 -4.41 13.62 2.25 0.03 -4.38 15
17 C 0.17 3.94 6.74 -82.70 -0.56 3.38 15
18 C -0.10 -1.78 8.64 36.01 0.31 -1.47 15
19 N -0.57 -13.79 10.16 -5.90 -0.06 -13.85 15
20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15
21 H 0.06 1.14 8.07 -51.93 -0.42 0.72 15
22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15
23 H 0.13 3.25 6.54 -52.49 -0.34 2.91 15
24 H 0.28 6.53 8.29 -40.82 -0.34 6.19 15
25 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15
26 H 0.07 1.23 8.06 -51.93 -0.42 0.81 15
27 H 0.06 1.07 6.34 -51.93 -0.33 0.74 15
28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15
LS Contribution 245.70 15.07 3.70 3.70
Total: -1.00 -28.19 245.70 -5.51 -33.70
By element:
Atomic # 1 Polarization: 4.47 SS G_CDS: -2.66 Total: 1.81 kcal
Atomic # 6 Polarization: -8.46 SS G_CDS: -2.15 Total: -10.61 kcal
Atomic # 7 Polarization: -33.76 SS G_CDS: 0.55 Total: -33.20 kcal
Atomic # 9 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.77 kcal
Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal
Total LS contribution 3.70 Total: 3.70 kcal
Total: -28.19 -5.51 -33.70 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238468927.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.862 kcal
(2) G-P(sol) polarization free energy of solvation -28.189 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.051 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.562 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds