Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37748 * 119.49849 * 2 1 4 4 C 1.41031 * 118.85769 * 179.97438 * 3 2 1 5 5 C 1.41509 * 121.02711 * 179.97438 * 4 3 2 6 6 H 1.07994 * 119.99803 * 148.17951 * 5 4 3 7 7 C 1.40048 * 120.00062 * 328.18418 * 5 4 3 8 8 N 1.30731 * 119.99818 * 350.62028 * 7 5 4 9 9 Si 1.86797 * 120.00034 * 170.62127 * 7 5 4 10 10 H 1.48499 * 109.47074 * 59.99864 * 9 7 5 11 11 H 1.48503 * 109.47422 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47235 * 299.99714 * 9 7 5 13 13 C 1.41066 * 117.94247 * 0.02562 * 4 3 2 14 14 C 1.50698 * 120.56904 * 179.97438 * 13 4 3 15 15 F 1.39898 * 109.47217 * 218.53964 * 14 13 4 16 16 F 1.39898 * 109.47529 * 338.54378 * 14 13 4 17 17 C 1.37691 * 118.85986 * 0.02562 * 13 4 3 18 18 C 1.50710 * 119.49364 * 180.02562 * 17 13 4 19 19 N 1.32012 * 119.49450 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.46864 * 270.02014 * 1 2 3 21 21 H 1.08997 * 109.47130 * 30.01628 * 1 2 3 22 22 H 1.08995 * 109.47107 * 150.01528 * 1 2 3 23 23 H 1.07995 * 120.56998 * 0.02562 * 3 2 1 24 24 H 0.97003 * 119.99617 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.46806 * 98.54030 * 14 13 4 26 26 H 1.08999 * 109.46593 * 269.99349 * 18 17 13 27 27 H 1.08997 * 109.46789 * 29.99798 * 18 17 13 28 28 H 1.08995 * 109.46782 * 149.99892 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.1989 0.0000 4 6 3.5955 1.1831 0.0006 5 6 4.3384 2.3875 0.0000 6 1 5.2981 2.4302 0.4935 7 6 3.8291 3.5242 -0.6403 8 7 2.7626 3.4291 -1.3903 9 14 4.6738 5.1760 -0.4228 10 1 6.0727 5.0849 -0.9125 11 1 3.9446 6.2109 -1.1990 12 1 4.6758 5.5453 1.0156 13 6 4.2425 -0.0704 0.0005 14 6 5.7470 -0.1563 0.0005 15 9 6.1538 -1.2128 -0.8213 16 9 6.2827 1.0427 -0.4819 17 6 3.4758 -1.2141 -0.0006 18 6 4.1522 -2.5608 0.0000 19 7 2.1569 -1.1490 0.0005 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3633 -0.8901 -0.5136 23 1 1.6464 2.1348 0.0004 24 1 2.4101 4.2163 -1.8342 25 1 6.1010 -0.3294 1.0168 26 1 4.3163 -2.8853 -1.0276 27 1 5.1100 -2.4861 0.5149 28 1 3.5194 -3.2850 0.5129 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238468927.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = -86.562061 kcal Electronic energy + Delta-G solvation = -15896.815083 eV Core-core repulsion = 12968.738559 eV Total energy + Delta-G solvation = -2928.076524 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.01588 -46.02194 -38.67960 -34.26246 -32.84962 -31.08587 -28.30802 -27.02195 -25.83411 -23.38105 -20.83606 -20.11081 -17.26488 -16.58199 -16.42101 -15.66774 -15.25267 -14.43648 -13.88808 -13.53881 -12.88562 -12.79432 -12.68399 -12.57908 -12.39303 -11.89529 -11.71945 -11.45235 -11.30254 -11.07084 -11.02283 -10.95777 -10.45783 -10.20453 -9.70890 -9.40325 -8.07969 -8.03487 -7.46866 -6.87462 -4.65617 2.42971 2.74307 3.01031 3.04307 3.17880 3.84950 4.54379 4.78183 5.24764 5.34909 5.51397 5.78823 5.94527 5.99219 6.08719 6.18633 6.27837 6.40391 6.50252 6.56965 6.89797 6.96493 7.11304 7.24395 7.39659 7.72974 7.98118 8.34070 8.60688 8.65608 9.48469 10.05708 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.013186 C = 0.008756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.026104 B = 2122.929632 C = 3197.176902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.116 3.884 3 C -0.202 4.202 4 C 0.155 3.845 5 C -0.443 4.443 6 H 0.095 0.905 7 C 0.075 3.925 8 N -0.790 5.790 9 Si 0.916 3.084 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.262 1.262 13 C -0.336 4.336 14 C 0.337 3.663 15 F -0.218 7.218 16 F -0.191 7.191 17 C 0.169 3.831 18 C -0.095 4.095 19 N -0.569 5.569 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.126 0.874 24 H 0.284 0.716 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -1.957 2.696 3.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.014 4.014 3 C -0.224 4.224 4 C 0.147 3.853 5 C -0.473 4.473 6 H 0.113 0.887 7 C -0.145 4.145 8 N -0.415 5.415 9 Si 0.740 3.260 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.187 1.187 13 C -0.342 4.342 14 C 0.283 3.717 15 F -0.199 7.199 16 F -0.172 7.172 17 C 0.031 3.969 18 C -0.153 4.153 19 N -0.285 5.285 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.144 0.856 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.947 -2.567 2.506 3.710 hybrid contribution 0.856 1.677 -0.211 1.895 sum 1.802 -0.889 2.295 3.051 Atomic orbital electron populations 1.20507 0.91334 1.01720 1.01158 1.20733 0.95206 0.89212 0.96263 1.21961 0.94578 0.97420 1.08435 1.17511 0.91972 0.90992 0.84792 1.19927 1.04731 0.93273 1.29397 0.88693 1.25994 0.94257 1.01153 0.93051 1.69741 1.19057 1.31960 1.20762 0.86218 0.80336 0.79823 0.79593 1.18629 1.20215 1.18672 1.20827 0.93082 0.95765 1.24562 1.19789 0.90815 0.71133 0.89950 1.92893 1.92069 1.58282 1.76680 1.92969 1.87508 1.46518 1.90255 1.20219 0.89643 0.93333 0.93732 1.20719 0.98893 0.93662 1.02008 1.67095 1.08476 1.29044 1.23904 0.92219 0.91827 0.92109 0.85579 0.90506 0.89269 0.91416 0.91827 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 10.16 36.01 0.37 -1.34 15 2 C 0.12 2.76 6.77 -82.69 -0.56 2.20 15 3 C -0.20 -5.16 8.36 -38.70 -0.32 -5.48 15 4 C 0.16 4.07 5.53 -106.52 -0.59 3.48 15 5 C -0.44 -11.39 7.29 -37.66 -0.27 -11.66 15 6 H 0.10 2.35 6.17 -52.49 -0.32 2.03 15 7 C 0.07 1.83 5.29 -17.34 -0.09 1.74 15 8 N -0.79 -19.96 11.06 55.55 0.61 -19.35 15 9 Si 0.92 18.40 29.57 -169.99 -5.03 13.37 15 10 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 11 H -0.28 -5.40 7.11 56.52 0.40 -5.00 15 12 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 13 C -0.34 -8.14 5.79 -103.75 -0.60 -8.75 15 14 C 0.34 7.11 4.84 36.00 0.17 7.29 15 15 F -0.22 -4.43 14.53 2.25 0.03 -4.40 15 16 F -0.19 -4.41 13.62 2.25 0.03 -4.38 15 17 C 0.17 3.94 6.74 -82.70 -0.56 3.38 15 18 C -0.10 -1.78 8.64 36.01 0.31 -1.47 15 19 N -0.57 -13.79 10.16 -5.90 -0.06 -13.85 15 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.06 1.14 8.07 -51.93 -0.42 0.72 15 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.13 3.25 6.54 -52.49 -0.34 2.91 15 24 H 0.28 6.53 8.29 -40.82 -0.34 6.19 15 25 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 26 H 0.07 1.23 8.06 -51.93 -0.42 0.81 15 27 H 0.06 1.07 6.34 -51.93 -0.33 0.74 15 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 245.70 15.07 3.70 3.70 Total: -1.00 -28.19 245.70 -5.51 -33.70 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -2.66 Total: 1.81 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -2.15 Total: -10.61 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.55 Total: -33.20 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.77 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.19 -5.51 -33.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238468927.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.862 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds