Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37748 * 119.49849 * 2 1 4 4 C 1.41031 * 118.85769 * 179.97438 * 3 2 1 5 5 C 1.41509 * 121.02711 * 179.97438 * 4 3 2 6 6 H 1.07994 * 119.99803 * 148.17951 * 5 4 3 7 7 C 1.40048 * 120.00062 * 328.18418 * 5 4 3 8 8 N 1.30731 * 119.99818 * 350.62028 * 7 5 4 9 9 Si 1.86797 * 120.00034 * 170.62127 * 7 5 4 10 10 H 1.48499 * 109.47074 * 59.99864 * 9 7 5 11 11 H 1.48503 * 109.47422 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47235 * 299.99714 * 9 7 5 13 13 C 1.41066 * 117.94247 * 0.02562 * 4 3 2 14 14 C 1.50698 * 120.56904 * 179.97438 * 13 4 3 15 15 F 1.39898 * 109.47217 * 218.53964 * 14 13 4 16 16 F 1.39898 * 109.47529 * 338.54378 * 14 13 4 17 17 C 1.37691 * 118.85986 * 0.02562 * 13 4 3 18 18 C 1.50710 * 119.49364 * 180.02562 * 17 13 4 19 19 N 1.32012 * 119.49450 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.46864 * 270.02014 * 1 2 3 21 21 H 1.08997 * 109.47130 * 30.01628 * 1 2 3 22 22 H 1.08995 * 109.47107 * 150.01528 * 1 2 3 23 23 H 1.07995 * 120.56998 * 0.02562 * 3 2 1 24 24 H 0.97003 * 119.99617 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.46806 * 98.54030 * 14 13 4 26 26 H 1.08999 * 109.46593 * 269.99349 * 18 17 13 27 27 H 1.08997 * 109.46789 * 29.99798 * 18 17 13 28 28 H 1.08995 * 109.46782 * 149.99892 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.1989 0.0000 4 6 3.5955 1.1831 0.0006 5 6 4.3384 2.3875 0.0000 6 1 5.2981 2.4302 0.4935 7 6 3.8291 3.5242 -0.6403 8 7 2.7626 3.4291 -1.3903 9 14 4.6738 5.1760 -0.4228 10 1 6.0727 5.0849 -0.9125 11 1 3.9446 6.2109 -1.1990 12 1 4.6758 5.5453 1.0156 13 6 4.2425 -0.0704 0.0005 14 6 5.7470 -0.1563 0.0005 15 9 6.1538 -1.2128 -0.8213 16 9 6.2827 1.0427 -0.4819 17 6 3.4758 -1.2141 -0.0006 18 6 4.1522 -2.5608 0.0000 19 7 2.1569 -1.1490 0.0005 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3633 -0.8901 -0.5136 23 1 1.6464 2.1348 0.0004 24 1 2.4101 4.2163 -1.8342 25 1 6.1010 -0.3294 1.0168 26 1 4.3163 -2.8853 -1.0276 27 1 5.1100 -2.4861 0.5149 28 1 3.5194 -3.2850 0.5129 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238468927.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = -102.475673 kcal Electronic energy + Delta-G solvation = -15897.505149 eV Core-core repulsion = 12968.738559 eV Total energy + Delta-G solvation = -2928.766590 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.69513 -47.71736 -40.48955 -36.10591 -34.56160 -32.92181 -29.93564 -28.70463 -27.68316 -25.06945 -22.65796 -21.88115 -19.12116 -18.23853 -18.13490 -17.44405 -16.98259 -16.20500 -15.58872 -15.22569 -14.59646 -14.47108 -14.41408 -14.30735 -13.90967 -13.60996 -13.39064 -13.06298 -12.93209 -12.72709 -12.61988 -12.55529 -12.12911 -11.92439 -11.50196 -11.19535 -9.93261 -9.92070 -9.28450 -8.70021 -6.57883 0.59737 0.92993 1.37595 1.49191 1.53515 2.17900 2.71421 3.16225 3.46232 3.65436 3.83058 4.08981 4.30875 4.34842 4.49336 4.68505 4.82130 4.90578 4.97951 5.00542 5.09612 5.19824 5.29307 5.48092 5.57813 5.86000 6.13082 6.45253 6.72953 6.76451 7.63668 8.25395 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.013186 C = 0.008756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.026104 B = 2122.929632 C = 3197.176902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.109 3.891 3 C -0.230 4.230 4 C 0.125 3.875 5 C -0.468 4.468 6 H 0.097 0.903 7 C 0.033 3.967 8 N -0.821 5.821 9 Si 0.985 3.015 10 H -0.262 1.262 11 H -0.267 1.267 12 H -0.254 1.254 13 C -0.357 4.357 14 C 0.337 3.663 15 F -0.213 7.213 16 F -0.205 7.205 17 C 0.157 3.843 18 C -0.089 4.089 19 N -0.582 5.582 20 H 0.081 0.919 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.114 0.886 24 H 0.291 0.709 25 H 0.132 0.868 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -2.192 3.163 4.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.022 4.022 3 C -0.253 4.253 4 C 0.118 3.882 5 C -0.498 4.498 6 H 0.115 0.885 7 C -0.183 4.183 8 N -0.447 5.447 9 Si 0.806 3.194 10 H -0.187 1.187 11 H -0.191 1.191 12 H -0.178 1.178 13 C -0.363 4.363 14 C 0.284 3.716 15 F -0.195 7.195 16 F -0.186 7.186 17 C 0.019 3.981 18 C -0.147 4.147 19 N -0.298 5.298 20 H 0.099 0.901 21 H 0.088 0.912 22 H 0.091 0.909 23 H 0.132 0.868 24 H 0.101 0.899 25 H 0.149 0.851 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.458 -2.825 2.975 4.354 hybrid contribution 0.659 1.660 -0.372 1.824 sum 2.116 -1.165 2.603 3.551 Atomic orbital electron populations 1.20547 0.88229 1.02576 1.02787 1.21386 0.97481 0.88672 0.94643 1.21970 0.94826 0.97663 1.10806 1.17943 0.92693 0.92275 0.85324 1.20164 1.05141 0.94129 1.30372 0.88500 1.26870 0.94784 1.04420 0.92237 1.69803 1.20288 1.33238 1.21349 0.85189 0.78966 0.75337 0.79949 1.18670 1.19146 1.17763 1.21238 0.95157 0.95464 1.24409 1.20031 0.89180 0.70721 0.91710 1.92894 1.91825 1.57855 1.76884 1.92935 1.87479 1.47621 1.90605 1.20961 0.89650 0.95137 0.92322 1.20769 0.99688 0.91384 1.02817 1.67259 1.09148 1.28957 1.24437 0.90085 0.91197 0.90945 0.86835 0.89851 0.85057 0.90886 0.89822 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.10 10.16 71.24 0.72 -2.38 15 2 C 0.11 5.16 6.77 42.42 0.29 5.45 15 3 C -0.23 -12.02 8.36 22.84 0.19 -11.83 15 4 C 0.13 6.68 5.53 -21.09 -0.12 6.56 15 5 C -0.47 -24.33 7.29 23.52 0.17 -24.16 15 6 H 0.10 4.83 6.17 -2.91 -0.02 4.81 15 7 C 0.03 1.63 5.29 85.30 0.45 2.08 15 8 N -0.82 -42.13 11.06 21.84 0.24 -41.89 15 9 Si 0.99 37.48 29.57 68.60 2.03 39.51 15 10 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 11 H -0.27 -9.61 7.11 99.48 0.71 -8.90 15 12 H -0.25 -9.22 7.11 99.48 0.71 -8.51 15 13 C -0.36 -17.13 5.79 -19.30 -0.11 -17.24 15 14 C 0.34 13.71 4.84 71.24 0.35 14.06 15 15 F -0.21 -8.23 14.53 44.97 0.65 -7.58 15 16 F -0.21 -9.32 13.62 44.97 0.61 -8.70 15 17 C 0.16 7.14 6.74 42.40 0.29 7.43 15 18 C -0.09 -3.12 8.64 71.24 0.62 -2.51 15 19 N -0.58 -27.74 10.16 -172.59 -1.75 -29.49 15 20 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15 21 H 0.07 2.46 8.07 -2.39 -0.02 2.44 15 22 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 23 H 0.11 6.06 6.54 -2.91 -0.02 6.05 15 24 H 0.29 13.51 8.29 -92.71 -0.77 12.74 15 25 H 0.13 4.27 8.14 -2.39 -0.02 4.25 15 26 H 0.07 2.49 8.06 -2.39 -0.02 2.47 15 27 H 0.08 2.56 6.34 -2.39 -0.02 2.54 15 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 Total: -1.00 -60.38 245.70 5.81 -54.57 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.18 Total: 16.12 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 2.84 Total: -22.54 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -1.51 Total: -71.38 kcal Atomic # 9 Polarization: -17.55 SS G_CDS: 1.27 Total: -16.28 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -60.38 5.81 -54.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238468927.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.904 kcal (2) G-P(sol) polarization free energy of solvation -60.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds