Wall clock time and date at job start Mon Mar 30 2020 02:55:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.37748 * 119.49849 * 2 1
4 4 C 1.41031 * 118.85769 * 179.97438 * 3 2 1
5 5 C 1.41509 * 121.02711 * 179.97438 * 4 3 2
6 6 H 1.07994 * 119.99803 * 148.17951 * 5 4 3
7 7 C 1.40048 * 120.00062 * 328.18418 * 5 4 3
8 8 N 1.30731 * 119.99818 * 350.62028 * 7 5 4
9 9 Si 1.86797 * 120.00034 * 170.62127 * 7 5 4
10 10 H 1.48499 * 109.47074 * 59.99864 * 9 7 5
11 11 H 1.48503 * 109.47422 * 179.97438 * 9 7 5
12 12 H 1.48503 * 109.47235 * 299.99714 * 9 7 5
13 13 C 1.41066 * 117.94247 * 0.02562 * 4 3 2
14 14 C 1.50698 * 120.56904 * 179.97438 * 13 4 3
15 15 F 1.39898 * 109.47217 * 218.53964 * 14 13 4
16 16 F 1.39898 * 109.47529 * 338.54378 * 14 13 4
17 17 C 1.37691 * 118.85986 * 0.02562 * 13 4 3
18 18 C 1.50710 * 119.49364 * 180.02562 * 17 13 4
19 19 N 1.32012 * 119.49450 * 179.97438 * 2 1 3
20 20 H 1.09000 * 109.46864 * 270.02014 * 1 2 3
21 21 H 1.08997 * 109.47130 * 30.01628 * 1 2 3
22 22 H 1.08995 * 109.47107 * 150.01528 * 1 2 3
23 23 H 1.07995 * 120.56998 * 0.02562 * 3 2 1
24 24 H 0.97003 * 119.99617 * 180.02562 * 8 7 5
25 25 H 1.08999 * 109.46806 * 98.54030 * 14 13 4
26 26 H 1.08999 * 109.46593 * 269.99349 * 18 17 13
27 27 H 1.08997 * 109.46789 * 29.99798 * 18 17 13
28 28 H 1.08995 * 109.46782 * 149.99892 * 18 17 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1853 1.1989 0.0000
4 6 3.5955 1.1831 0.0006
5 6 4.3384 2.3875 0.0000
6 1 5.2981 2.4302 0.4935
7 6 3.8291 3.5242 -0.6403
8 7 2.7626 3.4291 -1.3903
9 14 4.6738 5.1760 -0.4228
10 1 6.0727 5.0849 -0.9125
11 1 3.9446 6.2109 -1.1990
12 1 4.6758 5.5453 1.0156
13 6 4.2425 -0.0704 0.0005
14 6 5.7470 -0.1563 0.0005
15 9 6.1538 -1.2128 -0.8213
16 9 6.2827 1.0427 -0.4819
17 6 3.4758 -1.2141 -0.0006
18 6 4.1522 -2.5608 0.0000
19 7 2.1569 -1.1490 0.0005
20 1 -0.3633 0.0004 1.0277
21 1 -0.3633 0.8898 -0.5141
22 1 -0.3633 -0.8901 -0.5136
23 1 1.6464 2.1348 0.0004
24 1 2.4101 4.2163 -1.8342
25 1 6.1010 -0.3294 1.0168
26 1 4.3163 -2.8853 -1.0276
27 1 5.1100 -2.4861 0.5149
28 1 3.5194 -3.2850 0.5129
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238468927.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:23
Heat of formation + Delta-G solvation = -102.475673 kcal
Electronic energy + Delta-G solvation = -15897.505149 eV
Core-core repulsion = 12968.738559 eV
Total energy + Delta-G solvation = -2928.766590 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-49.69513 -47.71736 -40.48955 -36.10591 -34.56160 -32.92181 -29.93564 -28.70463
-27.68316 -25.06945 -22.65796 -21.88115 -19.12116 -18.23853 -18.13490 -17.44405
-16.98259 -16.20500 -15.58872 -15.22569 -14.59646 -14.47108 -14.41408 -14.30735
-13.90967 -13.60996 -13.39064 -13.06298 -12.93209 -12.72709 -12.61988 -12.55529
-12.12911 -11.92439 -11.50196 -11.19535 -9.93261 -9.92070 -9.28450 -8.70021
-6.57883 0.59737 0.92993 1.37595 1.49191 1.53515 2.17900 2.71421
3.16225 3.46232 3.65436 3.83058 4.08981 4.30875 4.34842 4.49336
4.68505 4.82130 4.90578 4.97951 5.00542 5.09612 5.19824 5.29307
5.48092 5.57813 5.86000 6.13082 6.45253 6.72953 6.76451 7.63668
8.25395
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.023327 B = 0.013186 C = 0.008756
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1200.026104 B = 2122.929632 C = 3197.176902
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 C 0.109 3.891
3 C -0.230 4.230
4 C 0.125 3.875
5 C -0.468 4.468
6 H 0.097 0.903
7 C 0.033 3.967
8 N -0.821 5.821
9 Si 0.985 3.015
10 H -0.262 1.262
11 H -0.267 1.267
12 H -0.254 1.254
13 C -0.357 4.357
14 C 0.337 3.663
15 F -0.213 7.213
16 F -0.205 7.205
17 C 0.157 3.843
18 C -0.089 4.089
19 N -0.582 5.582
20 H 0.081 0.919
21 H 0.069 0.931
22 H 0.072 0.928
23 H 0.114 0.886
24 H 0.291 0.709
25 H 0.132 0.868
26 H 0.073 0.927
27 H 0.083 0.917
28 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.123 -2.192 3.163 4.396
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.022 4.022
3 C -0.253 4.253
4 C 0.118 3.882
5 C -0.498 4.498
6 H 0.115 0.885
7 C -0.183 4.183
8 N -0.447 5.447
9 Si 0.806 3.194
10 H -0.187 1.187
11 H -0.191 1.191
12 H -0.178 1.178
13 C -0.363 4.363
14 C 0.284 3.716
15 F -0.195 7.195
16 F -0.186 7.186
17 C 0.019 3.981
18 C -0.147 4.147
19 N -0.298 5.298
20 H 0.099 0.901
21 H 0.088 0.912
22 H 0.091 0.909
23 H 0.132 0.868
24 H 0.101 0.899
25 H 0.149 0.851
26 H 0.091 0.909
27 H 0.102 0.898
28 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 1.458 -2.825 2.975 4.354
hybrid contribution 0.659 1.660 -0.372 1.824
sum 2.116 -1.165 2.603 3.551
Atomic orbital electron populations
1.20547 0.88229 1.02576 1.02787 1.21386 0.97481 0.88672 0.94643
1.21970 0.94826 0.97663 1.10806 1.17943 0.92693 0.92275 0.85324
1.20164 1.05141 0.94129 1.30372 0.88500 1.26870 0.94784 1.04420
0.92237 1.69803 1.20288 1.33238 1.21349 0.85189 0.78966 0.75337
0.79949 1.18670 1.19146 1.17763 1.21238 0.95157 0.95464 1.24409
1.20031 0.89180 0.70721 0.91710 1.92894 1.91825 1.57855 1.76884
1.92935 1.87479 1.47621 1.90605 1.20961 0.89650 0.95137 0.92322
1.20769 0.99688 0.91384 1.02817 1.67259 1.09148 1.28957 1.24437
0.90085 0.91197 0.90945 0.86835 0.89851 0.85057 0.90886 0.89822
0.90651
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -3.10 10.16 71.24 0.72 -2.38 15
2 C 0.11 5.16 6.77 42.42 0.29 5.45 15
3 C -0.23 -12.02 8.36 22.84 0.19 -11.83 15
4 C 0.13 6.68 5.53 -21.09 -0.12 6.56 15
5 C -0.47 -24.33 7.29 23.52 0.17 -24.16 15
6 H 0.10 4.83 6.17 -2.91 -0.02 4.81 15
7 C 0.03 1.63 5.29 85.30 0.45 2.08 15
8 N -0.82 -42.13 11.06 21.84 0.24 -41.89 15
9 Si 0.99 37.48 29.57 68.60 2.03 39.51 15
10 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15
11 H -0.27 -9.61 7.11 99.48 0.71 -8.90 15
12 H -0.25 -9.22 7.11 99.48 0.71 -8.51 15
13 C -0.36 -17.13 5.79 -19.30 -0.11 -17.24 15
14 C 0.34 13.71 4.84 71.24 0.35 14.06 15
15 F -0.21 -8.23 14.53 44.97 0.65 -7.58 15
16 F -0.21 -9.32 13.62 44.97 0.61 -8.70 15
17 C 0.16 7.14 6.74 42.40 0.29 7.43 15
18 C -0.09 -3.12 8.64 71.24 0.62 -2.51 15
19 N -0.58 -27.74 10.16 -172.59 -1.75 -29.49 15
20 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15
21 H 0.07 2.46 8.07 -2.39 -0.02 2.44 15
22 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15
23 H 0.11 6.06 6.54 -2.91 -0.02 6.05 15
24 H 0.29 13.51 8.29 -92.71 -0.77 12.74 15
25 H 0.13 4.27 8.14 -2.39 -0.02 4.25 15
26 H 0.07 2.49 8.06 -2.39 -0.02 2.47 15
27 H 0.08 2.56 6.34 -2.39 -0.02 2.54 15
28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15
Total: -1.00 -60.38 245.70 5.81 -54.57
By element:
Atomic # 1 Polarization: 14.94 SS G_CDS: 1.18 Total: 16.12 kcal
Atomic # 6 Polarization: -25.38 SS G_CDS: 2.84 Total: -22.54 kcal
Atomic # 7 Polarization: -69.87 SS G_CDS: -1.51 Total: -71.38 kcal
Atomic # 9 Polarization: -17.55 SS G_CDS: 1.27 Total: -16.28 kcal
Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal
Total: -60.38 5.81 -54.57 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238468927.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.904 kcal
(2) G-P(sol) polarization free energy of solvation -60.381 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.285 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.572 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.476 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds