Wall clock time and date at job start Mon Mar 30 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38047 * 120.28980 * 2 1 4 4 C 1.41072 * 118.20053 * 179.97438 * 3 2 1 5 5 C 1.41403 * 120.66431 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00319 * 154.96232 * 5 4 3 7 7 C 1.39960 * 119.99986 * 334.96071 * 5 4 3 8 8 N 1.30819 * 119.99977 * 344.24375 * 7 5 4 9 9 Si 1.86799 * 119.99932 * 164.24303 * 7 5 4 10 10 H 1.48508 * 109.47090 * 60.00195 * 9 7 5 11 11 H 1.48502 * 109.46943 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47389 * 300.00206 * 9 7 5 13 13 C 1.40747 * 118.67158 * 0.02562 * 4 3 2 14 14 C 1.50699 * 119.79868 * 179.97438 * 13 4 3 15 15 N 1.31468 * 120.40230 * 359.97438 * 13 4 3 16 16 C 1.32086 * 121.98129 * 359.73127 * 15 13 4 17 17 C 1.50701 * 119.33925 * 180.26553 * 16 15 13 18 18 F 1.39903 * 109.47161 * 120.27324 * 17 16 15 19 19 F 1.39907 * 109.47185 * 240.26761 * 17 16 15 20 20 H 1.08994 * 109.47422 * 89.99839 * 1 2 3 21 21 H 1.08998 * 109.46735 * 329.99598 * 1 2 3 22 22 H 1.09005 * 109.47067 * 209.99867 * 1 2 3 23 23 H 1.08001 * 120.90107 * 359.95961 * 3 2 1 24 24 H 0.97004 * 120.00111 * 179.97438 * 8 7 5 25 25 H 1.09001 * 109.47028 * 89.99506 * 14 13 4 26 26 H 1.08997 * 109.47601 * 210.00054 * 14 13 4 27 27 H 1.08999 * 109.47010 * 329.99879 * 14 13 4 28 28 H 1.09001 * 109.47300 * 0.27040 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2033 1.1920 0.0000 4 6 3.6131 1.1406 0.0006 5 6 4.3781 2.3298 0.0011 6 1 5.3828 2.3254 0.3973 7 6 3.8334 3.5126 -0.5118 8 7 2.7622 3.4681 -1.2615 9 14 4.6358 5.1547 -0.1260 10 1 6.0323 5.1541 -0.6314 11 1 3.8723 6.2454 -0.7838 12 1 4.6413 5.3699 1.3433 13 6 4.2429 -0.1181 0.0005 14 6 5.7475 -0.2027 0.0005 15 7 3.5266 -1.2205 0.0005 16 6 2.2059 -1.1967 0.0058 17 6 1.4440 -2.4968 0.0115 18 9 0.6391 -2.5606 1.1540 19 9 0.6392 -2.5708 -1.1305 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 0.8900 0.5139 22 1 -0.3633 -0.8900 0.5138 23 1 1.6829 2.1383 -0.0007 24 1 2.3844 4.2879 -1.6167 25 1 6.1103 -0.2230 1.0282 26 1 6.0604 -1.1116 -0.5133 27 1 6.1602 0.6655 -0.5133 28 1 2.1469 -3.3299 0.0152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238469405.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:36 Heat of formation + Delta-G solvation = -96.647267 kcal Electronic energy + Delta-G solvation = -15624.492961 eV Core-core repulsion = 12695.979109 eV Total energy + Delta-G solvation = -2928.513851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.31618 -46.25612 -38.71996 -34.39296 -33.00228 -31.12500 -28.44874 -27.28225 -25.42686 -23.19791 -21.33910 -19.96733 -17.32805 -16.85154 -16.50766 -16.19530 -15.43459 -14.50207 -13.72231 -13.62686 -13.05330 -12.96237 -12.68220 -12.39858 -12.31740 -11.94246 -11.85021 -11.62673 -11.40277 -11.37221 -11.02817 -10.93603 -10.75324 -10.37845 -9.72225 -9.50556 -8.32038 -8.12222 -7.55044 -7.02085 -4.68605 2.36420 2.80697 2.92921 2.94503 3.02282 3.71832 4.33053 4.47939 5.00587 5.28241 5.54789 5.84534 5.91382 6.03496 6.25281 6.27176 6.39243 6.55302 6.58719 6.70231 6.81074 6.91660 7.02691 7.22424 7.51092 7.67966 7.81645 8.25378 8.48119 8.54460 9.38952 9.87516 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.038348 B = 0.008575 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.978849 B = 3264.687450 C = 3751.157033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.080 4.080 3 C -0.143 4.143 4 C 0.082 3.918 5 C -0.435 4.435 6 H 0.089 0.911 7 C 0.072 3.928 8 N -0.778 5.778 9 Si 0.917 3.083 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.261 1.261 13 C 0.006 3.994 14 C -0.071 4.071 15 N -0.442 5.442 16 C -0.099 4.099 17 C 0.338 3.662 18 F -0.210 7.210 19 F -0.210 7.210 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.131 0.869 24 H 0.287 0.713 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -1.840 1.424 2.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.168 4.168 4 C 0.077 3.923 5 C -0.464 4.464 6 H 0.107 0.893 7 C -0.148 4.148 8 N -0.401 5.401 9 Si 0.740 3.260 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.185 1.185 13 C -0.139 4.139 14 C -0.128 4.128 15 N -0.150 5.150 16 C -0.235 4.235 17 C 0.284 3.716 18 F -0.191 7.191 19 F -0.192 7.192 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.148 0.852 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.230 -2.510 1.264 2.820 hybrid contribution -0.351 1.645 0.016 1.682 sum -0.581 -0.865 1.280 1.651 Atomic orbital electron populations 1.20810 0.92690 1.01971 1.01497 1.20126 0.95362 0.93848 0.98945 1.21523 0.93978 0.96361 1.04928 1.18393 0.92615 0.92984 0.88330 1.19686 1.01137 0.92216 1.33343 0.89251 1.26088 0.94478 1.01852 0.92429 1.69783 1.18090 1.31184 1.21074 0.86211 0.80143 0.79505 0.80129 1.18584 1.20066 1.18494 1.20939 0.94919 0.87934 1.10151 1.20254 0.90785 1.01293 1.00486 1.66243 1.06167 1.33195 1.09379 1.20022 0.90601 0.91962 1.20950 1.19784 0.83293 0.98308 0.70258 1.92885 1.76646 1.97454 1.52152 1.92934 1.76676 1.97551 1.52006 0.92013 0.92501 0.91769 0.85151 0.90147 0.93200 0.93107 0.91325 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 8.98 36.01 0.32 -1.95 15 2 C -0.08 -1.92 5.84 -104.56 -0.61 -2.53 15 3 C -0.14 -3.65 8.47 -38.58 -0.33 -3.98 15 4 C 0.08 2.10 5.58 -106.67 -0.60 1.50 15 5 C -0.44 -10.64 8.16 -37.73 -0.31 -10.94 15 6 H 0.09 2.04 6.86 -52.49 -0.36 1.68 15 7 C 0.07 1.67 5.20 -17.34 -0.09 1.58 15 8 N -0.78 -18.81 10.91 55.55 0.61 -18.21 15 9 Si 0.92 17.19 29.59 -169.99 -5.03 12.16 15 10 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 11 H -0.28 -5.07 7.11 56.52 0.40 -4.67 15 12 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 13 C 0.01 0.15 6.86 -81.80 -0.56 -0.41 15 14 C -0.07 -1.43 9.58 36.01 0.34 -1.09 15 15 N -0.44 -10.79 10.13 -5.08 -0.05 -10.84 15 16 C -0.10 -2.34 6.29 -82.36 -0.52 -2.86 15 17 C 0.34 6.74 5.04 36.01 0.18 6.92 15 18 F -0.21 -4.11 15.32 2.25 0.03 -4.08 15 19 F -0.21 -4.21 16.41 2.25 0.04 -4.17 15 20 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 21 H 0.06 1.07 8.09 -51.93 -0.42 0.65 15 22 H 0.06 1.24 5.48 -51.93 -0.28 0.96 15 23 H 0.13 3.36 6.24 -52.49 -0.33 3.03 15 24 H 0.29 6.30 8.30 -40.82 -0.34 5.96 15 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 27 H 0.07 1.35 6.76 -51.93 -0.35 1.00 15 28 H 0.11 1.89 8.10 -51.93 -0.42 1.47 15 LS Contribution 247.95 15.07 3.74 3.74 Total: -1.00 -26.76 247.95 -5.39 -32.16 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -2.57 Total: 3.00 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.16 Total: -13.75 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: 0.55 Total: -29.05 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.07 Total: -8.25 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -26.76 -5.39 -32.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238469405.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.489 kcal (2) G-P(sol) polarization free energy of solvation -26.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds