Wall clock time and date at job start Mon Mar 30 2020 02:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38047 * 120.28980 * 2 1 4 4 C 1.41072 * 118.20053 * 179.97438 * 3 2 1 5 5 C 1.41403 * 120.66431 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00319 * 154.96232 * 5 4 3 7 7 C 1.39960 * 119.99986 * 334.96071 * 5 4 3 8 8 N 1.30819 * 119.99977 * 344.24375 * 7 5 4 9 9 Si 1.86799 * 119.99932 * 164.24303 * 7 5 4 10 10 H 1.48508 * 109.47090 * 60.00195 * 9 7 5 11 11 H 1.48502 * 109.46943 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47389 * 300.00206 * 9 7 5 13 13 C 1.40747 * 118.67158 * 0.02562 * 4 3 2 14 14 C 1.50699 * 119.79868 * 179.97438 * 13 4 3 15 15 N 1.31468 * 120.40230 * 359.97438 * 13 4 3 16 16 C 1.32086 * 121.98129 * 359.73127 * 15 13 4 17 17 C 1.50701 * 119.33925 * 180.26553 * 16 15 13 18 18 F 1.39903 * 109.47161 * 120.27324 * 17 16 15 19 19 F 1.39907 * 109.47185 * 240.26761 * 17 16 15 20 20 H 1.08994 * 109.47422 * 89.99839 * 1 2 3 21 21 H 1.08998 * 109.46735 * 329.99598 * 1 2 3 22 22 H 1.09005 * 109.47067 * 209.99867 * 1 2 3 23 23 H 1.08001 * 120.90107 * 359.95961 * 3 2 1 24 24 H 0.97004 * 120.00111 * 179.97438 * 8 7 5 25 25 H 1.09001 * 109.47028 * 89.99506 * 14 13 4 26 26 H 1.08997 * 109.47601 * 210.00054 * 14 13 4 27 27 H 1.08999 * 109.47010 * 329.99879 * 14 13 4 28 28 H 1.09001 * 109.47300 * 0.27040 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2033 1.1920 0.0000 4 6 3.6131 1.1406 0.0006 5 6 4.3781 2.3298 0.0011 6 1 5.3828 2.3254 0.3973 7 6 3.8334 3.5126 -0.5118 8 7 2.7622 3.4681 -1.2615 9 14 4.6358 5.1547 -0.1260 10 1 6.0323 5.1541 -0.6314 11 1 3.8723 6.2454 -0.7838 12 1 4.6413 5.3699 1.3433 13 6 4.2429 -0.1181 0.0005 14 6 5.7475 -0.2027 0.0005 15 7 3.5266 -1.2205 0.0005 16 6 2.2059 -1.1967 0.0058 17 6 1.4440 -2.4968 0.0115 18 9 0.6391 -2.5606 1.1540 19 9 0.6392 -2.5708 -1.1305 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 0.8900 0.5139 22 1 -0.3633 -0.8900 0.5138 23 1 1.6829 2.1383 -0.0007 24 1 2.3844 4.2879 -1.6167 25 1 6.1103 -0.2230 1.0282 26 1 6.0604 -1.1116 -0.5133 27 1 6.1602 0.6655 -0.5133 28 1 2.1469 -3.3299 0.0152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238469405.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:35 Heat of formation + Delta-G solvation = -110.923486 kcal Electronic energy + Delta-G solvation = -15625.112024 eV Core-core repulsion = 12695.979109 eV Total energy + Delta-G solvation = -2929.132915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.90279 -47.83873 -40.53372 -36.18442 -34.76769 -32.93416 -30.14930 -29.00597 -27.16645 -24.91391 -23.14954 -21.75390 -19.12672 -18.51190 -18.09791 -17.86765 -17.12839 -16.26989 -15.37017 -15.31244 -14.71281 -14.69062 -14.26445 -14.08245 -13.93531 -13.60058 -13.54773 -13.35414 -13.06726 -12.92807 -12.67706 -12.60720 -12.33269 -11.97873 -11.47229 -11.21988 -10.17615 -9.99396 -9.37481 -8.77749 -6.54469 0.55676 0.94309 1.39361 1.49551 1.53037 2.14867 2.56479 2.86272 3.40357 3.45632 3.93629 4.13885 4.30204 4.38664 4.52382 4.55657 4.76734 4.87089 4.98871 5.04241 5.09788 5.11940 5.27615 5.48055 5.67473 5.85463 5.95211 6.41277 6.65370 6.69640 7.52896 8.14966 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.038348 B = 0.008575 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.978849 B = 3264.687450 C = 3751.157033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.094 4.094 3 C -0.170 4.170 4 C 0.052 3.948 5 C -0.456 4.456 6 H 0.100 0.900 7 C 0.033 3.967 8 N -0.809 5.809 9 Si 0.991 3.009 10 H -0.252 1.252 11 H -0.269 1.269 12 H -0.258 1.258 13 C -0.015 4.015 14 C -0.064 4.064 15 N -0.449 5.449 16 C -0.119 4.119 17 C 0.345 3.655 18 F -0.207 7.207 19 F -0.210 7.210 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.119 0.881 24 H 0.295 0.705 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 -1.582 1.664 2.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.096 4.096 3 C -0.195 4.195 4 C 0.047 3.953 5 C -0.484 4.484 6 H 0.118 0.882 7 C -0.185 4.185 8 N -0.432 5.432 9 Si 0.811 3.189 10 H -0.176 1.176 11 H -0.194 1.194 12 H -0.182 1.182 13 C -0.160 4.160 14 C -0.121 4.121 15 N -0.157 5.157 16 C -0.255 4.255 17 C 0.291 3.709 18 F -0.189 7.189 19 F -0.192 7.192 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.137 0.863 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.317 -2.276 1.502 2.745 hybrid contribution -0.558 1.547 -0.078 1.646 sum -0.240 -0.730 1.424 1.618 Atomic orbital electron populations 1.20793 0.90441 1.02922 1.02100 1.20545 0.97238 0.93668 0.98163 1.21564 0.94461 0.96571 1.06887 1.18795 0.93109 0.94225 0.89147 1.20013 1.01777 0.92753 1.33848 0.88210 1.27000 0.94786 1.05167 0.91530 1.69839 1.19257 1.32604 1.21549 0.85094 0.79378 0.74628 0.79828 1.17616 1.19377 1.18230 1.21572 0.96905 0.87708 1.09824 1.20262 0.88190 1.01997 1.01701 1.66348 1.06604 1.33139 1.09643 1.20652 0.90865 0.93566 1.20402 1.19807 0.83419 0.97444 0.70219 1.92888 1.76575 1.97356 1.52032 1.92932 1.76684 1.97461 1.52082 0.91445 0.91536 0.90792 0.86333 0.89384 0.91603 0.91813 0.91138 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.20 8.98 71.24 0.64 -3.56 15 2 C -0.09 -4.50 5.84 -19.83 -0.12 -4.62 15 3 C -0.17 -8.84 8.47 22.92 0.19 -8.65 15 4 C 0.05 2.71 5.58 -21.19 -0.12 2.59 15 5 C -0.46 -22.31 8.16 23.47 0.19 -22.12 15 6 H 0.10 4.50 6.86 -2.91 -0.02 4.48 15 7 C 0.03 1.52 5.20 85.26 0.44 1.97 15 8 N -0.81 -39.38 10.91 21.83 0.24 -39.15 15 9 Si 0.99 34.38 29.59 68.60 2.03 36.41 15 10 H -0.25 -8.34 7.11 99.48 0.71 -7.64 15 11 H -0.27 -8.97 7.11 99.48 0.71 -8.27 15 12 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 13 C -0.01 -0.71 6.86 43.23 0.30 -0.41 15 14 C -0.06 -2.53 9.58 71.24 0.68 -1.84 15 15 N -0.45 -21.70 10.13 -169.99 -1.72 -23.42 15 16 C -0.12 -5.54 6.29 42.60 0.27 -5.28 15 17 C 0.35 13.19 5.04 71.24 0.36 13.55 15 18 F -0.21 -7.74 15.32 44.97 0.69 -7.05 15 19 F -0.21 -8.06 16.41 44.97 0.74 -7.32 15 20 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 21 H 0.07 2.47 8.09 -2.39 -0.02 2.45 15 22 H 0.07 2.77 5.48 -2.38 -0.01 2.75 15 23 H 0.12 6.31 6.24 -2.91 -0.02 6.29 15 24 H 0.30 12.93 8.30 -92.71 -0.77 12.16 15 25 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 27 H 0.07 2.71 6.76 -2.39 -0.02 2.69 15 28 H 0.14 4.46 8.10 -2.39 -0.02 4.44 15 Total: -1.00 -56.45 247.95 6.00 -50.45 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 1.19 Total: 18.46 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 2.84 Total: -28.37 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -1.48 Total: -62.57 kcal Atomic # 9 Polarization: -15.80 SS G_CDS: 1.43 Total: -14.37 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Total: -56.45 6.00 -50.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238469405.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.472 kcal (2) G-P(sol) polarization free energy of solvation -56.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds