Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38972 * 120.21948 * 2 1 4 4 C 1.38141 * 118.59057 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.51166 * 179.97438 * 4 3 2 6 6 F 1.39912 * 109.46687 * 19.04547 * 5 4 3 7 7 F 1.39895 * 109.47415 * 139.04037 * 5 4 3 8 8 C 1.40660 * 118.98346 * 359.97438 * 4 3 2 9 9 C 1.41396 * 119.82899 * 180.02562 * 8 4 3 10 10 H 1.08003 * 120.00173 * 349.21003 * 9 8 4 11 11 C 1.40038 * 119.99907 * 169.20224 * 9 8 4 12 12 N 1.30730 * 120.00151 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00058 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47265 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47206 * 120.00208 * 13 11 9 16 16 H 1.48506 * 109.47252 * 240.00335 * 13 11 9 17 17 N 1.33608 * 120.33968 * 0.02562 * 8 4 3 18 18 C 1.31430 * 121.51661 * 359.97438 * 17 8 4 19 19 C 1.50700 * 119.49303 * 179.97438 * 18 17 8 20 20 H 1.09000 * 109.46951 * 90.00230 * 1 2 3 21 21 H 1.09004 * 109.46912 * 209.99550 * 1 2 3 22 22 H 1.08994 * 109.47550 * 330.00070 * 1 2 3 23 23 H 1.08003 * 120.70081 * 0.24866 * 3 2 1 24 24 H 1.08999 * 109.47108 * 259.04772 * 5 4 3 25 25 H 0.97001 * 120.00281 * 179.97438 * 12 11 9 26 26 H 1.09006 * 109.46646 * 89.99940 * 19 18 17 27 27 H 1.08996 * 109.47164 * 210.00019 * 19 18 17 28 28 H 1.08997 * 109.47032 * 330.00724 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.2009 0.0000 4 6 3.5873 1.1616 0.0005 5 6 4.3891 2.4377 0.0000 6 9 3.5811 3.4961 0.4294 7 9 5.4802 2.3033 0.8651 8 6 4.2336 -0.0877 0.0016 9 6 5.6463 -0.1488 0.0027 10 1 6.2256 0.7458 -0.1723 11 6 6.2942 -1.3691 0.2310 12 7 5.5930 -2.4519 0.4426 13 14 8.1604 -1.4499 0.2318 14 1 8.7146 -0.0974 -0.0306 15 1 8.6346 -1.9306 1.5545 16 1 8.6158 -2.3860 -0.8274 17 7 3.5196 -1.2170 0.0016 18 6 2.2054 -1.1989 0.0011 19 6 1.4455 -2.5003 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 1.6816 2.1447 0.0040 24 1 4.7481 2.6408 -1.0089 25 1 6.0418 -3.2973 0.6003 26 1 1.2619 -2.8142 1.0281 27 1 0.4940 -2.3651 -0.5137 28 1 2.0311 -3.2627 -0.5131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238502145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = -84.339303 kcal Electronic energy + Delta-G solvation = -15741.324440 eV Core-core repulsion = 12813.344302 eV Total energy + Delta-G solvation = -2927.980138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.02896 -46.04008 -38.57956 -34.16888 -32.30828 -31.65645 -27.99400 -27.66607 -25.09117 -23.17242 -21.24503 -19.64825 -17.66797 -16.55306 -16.33412 -15.63174 -15.09198 -14.56732 -14.02061 -13.49966 -12.87535 -12.68296 -12.55556 -12.44142 -12.12816 -11.99302 -11.81395 -11.49695 -11.21420 -11.04820 -11.00443 -10.93971 -10.43497 -10.26234 -9.68735 -9.34756 -8.23812 -7.70643 -7.49365 -6.55602 -4.62350 2.51103 2.81547 3.05908 3.11094 3.12948 3.89368 4.59190 4.78567 5.36710 5.53601 5.70378 5.84772 5.95502 5.99979 6.06989 6.27699 6.30646 6.32317 6.48625 6.58742 6.66142 6.86363 7.05755 7.24740 7.45996 7.58827 7.90596 8.15542 8.52968 8.77067 9.96000 10.19109 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.012929 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.680314 B = 2165.075453 C = 3359.996857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.292 4.292 3 C -0.012 4.012 4 C -0.344 4.344 5 C 0.337 3.663 6 F -0.222 7.222 7 F -0.200 7.200 8 C 0.278 3.722 9 C -0.421 4.421 10 H 0.096 0.904 11 C 0.069 3.931 12 N -0.712 5.712 13 Si 0.909 3.091 14 H -0.257 1.257 15 H -0.272 1.272 16 H -0.272 1.272 17 N -0.477 5.477 18 C 0.167 3.833 19 C -0.094 4.094 20 H 0.042 0.958 21 H 0.051 0.949 22 H 0.043 0.957 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.275 0.725 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 2.259 -1.508 3.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.297 4.297 3 C -0.036 4.036 4 C -0.350 4.350 5 C 0.283 3.717 6 F -0.204 7.204 7 F -0.181 7.181 8 C 0.154 3.846 9 C -0.451 4.451 10 H 0.114 0.886 11 C -0.157 4.157 12 N -0.332 5.332 13 Si 0.733 3.267 14 H -0.181 1.181 15 H -0.197 1.197 16 H -0.197 1.197 17 N -0.189 5.189 18 C 0.018 3.982 19 C -0.151 4.151 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.122 0.878 24 H 0.113 0.887 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.054 1.265 -1.425 2.802 hybrid contribution 0.370 0.847 0.183 0.943 sum -1.683 2.112 -1.242 2.973 Atomic orbital electron populations 1.20321 0.92971 1.00455 0.99740 1.19890 0.95074 0.93622 1.21091 1.20509 0.92626 0.96594 0.93897 1.20834 0.94308 0.94689 1.25130 1.19861 0.78324 0.83231 0.90279 1.92867 1.75020 1.60225 1.92240 1.92932 1.55546 1.96050 1.73589 1.18194 0.93579 0.85121 0.87695 1.20035 0.90225 0.95652 1.39179 0.88567 1.26123 1.00888 0.95258 0.93457 1.70100 1.37100 0.99411 1.26639 0.86229 0.81991 0.79763 0.78717 1.18089 1.19691 1.19719 1.68630 1.04102 1.28662 1.17493 1.21123 0.91541 0.93073 0.92443 1.20577 0.98240 0.94944 1.01383 0.93879 0.93047 0.93791 0.87796 0.88743 0.91408 0.91994 0.92322 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 9.20 36.01 0.33 -1.01 15 2 C -0.29 -6.44 5.92 -104.16 -0.62 -7.06 15 3 C -0.01 -0.27 9.19 -39.35 -0.36 -0.63 15 4 C -0.34 -8.39 5.78 -103.74 -0.60 -8.99 15 5 C 0.34 7.20 5.13 36.01 0.18 7.39 15 6 F -0.22 -4.55 16.28 2.25 0.04 -4.52 15 7 F -0.20 -4.58 14.57 2.25 0.03 -4.55 15 8 C 0.28 7.51 6.50 -84.98 -0.55 6.96 15 9 C -0.42 -11.09 8.05 -37.71 -0.30 -11.40 15 10 H 0.10 2.40 5.70 -52.48 -0.30 2.10 15 11 C 0.07 1.73 5.49 -17.35 -0.10 1.64 15 12 N -0.71 -18.60 11.53 55.55 0.64 -17.96 15 13 Si 0.91 18.51 29.56 -169.99 -5.02 13.49 15 14 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 16 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 17 N -0.48 -12.93 7.87 -7.37 -0.06 -12.99 15 18 C 0.17 3.98 6.78 -82.58 -0.56 3.42 15 19 C -0.09 -1.81 9.35 36.01 0.34 -1.47 15 20 H 0.04 0.69 8.14 -51.93 -0.42 0.26 15 21 H 0.05 0.81 6.70 -51.93 -0.35 0.47 15 22 H 0.04 0.70 8.09 -51.93 -0.42 0.28 15 23 H 0.10 2.12 7.44 -52.48 -0.39 1.73 15 24 H 0.10 1.75 8.14 -51.93 -0.42 1.33 15 25 H 0.27 6.47 8.29 -40.82 -0.34 6.13 15 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.06 0.96 6.67 -51.93 -0.35 0.61 15 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 247.99 15.07 3.74 3.74 Total: -1.00 -28.78 247.99 -5.50 -34.28 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -2.63 Total: -0.34 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -2.24 Total: -11.15 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.58 Total: -30.95 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.78 -5.50 -34.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238502145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.060 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds