Wall clock time and date at job start Mon Mar 30 2020 02:55:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38972 * 120.21948 * 2 1
4 4 C 1.38141 * 118.59057 * 179.97438 * 3 2 1
5 5 C 1.50705 * 120.51166 * 179.97438 * 4 3 2
6 6 F 1.39912 * 109.46687 * 19.04547 * 5 4 3
7 7 F 1.39895 * 109.47415 * 139.04037 * 5 4 3
8 8 C 1.40660 * 118.98346 * 359.97438 * 4 3 2
9 9 C 1.41396 * 119.82899 * 180.02562 * 8 4 3
10 10 H 1.08003 * 120.00173 * 349.21003 * 9 8 4
11 11 C 1.40038 * 119.99907 * 169.20224 * 9 8 4
12 12 N 1.30730 * 120.00151 * 0.02562 * 11 9 8
13 13 Si 1.86799 * 120.00058 * 179.97438 * 11 9 8
14 14 H 1.48502 * 109.47265 * 0.02562 * 13 11 9
15 15 H 1.48502 * 109.47206 * 120.00208 * 13 11 9
16 16 H 1.48506 * 109.47252 * 240.00335 * 13 11 9
17 17 N 1.33608 * 120.33968 * 0.02562 * 8 4 3
18 18 C 1.31430 * 121.51661 * 359.97438 * 17 8 4
19 19 C 1.50700 * 119.49303 * 179.97438 * 18 17 8
20 20 H 1.09000 * 109.46951 * 90.00230 * 1 2 3
21 21 H 1.09004 * 109.46912 * 209.99550 * 1 2 3
22 22 H 1.08994 * 109.47550 * 330.00070 * 1 2 3
23 23 H 1.08003 * 120.70081 * 0.24866 * 3 2 1
24 24 H 1.08999 * 109.47108 * 259.04772 * 5 4 3
25 25 H 0.97001 * 120.00281 * 179.97438 * 12 11 9
26 26 H 1.09006 * 109.46646 * 89.99940 * 19 18 17
27 27 H 1.08996 * 109.47164 * 210.00019 * 19 18 17
28 28 H 1.08997 * 109.47032 * 330.00724 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2065 1.2009 0.0000
4 6 3.5873 1.1616 0.0005
5 6 4.3891 2.4377 0.0000
6 9 3.5811 3.4961 0.4294
7 9 5.4802 2.3033 0.8651
8 6 4.2336 -0.0877 0.0016
9 6 5.6463 -0.1488 0.0027
10 1 6.2256 0.7458 -0.1723
11 6 6.2942 -1.3691 0.2310
12 7 5.5930 -2.4519 0.4426
13 14 8.1604 -1.4499 0.2318
14 1 8.7146 -0.0974 -0.0306
15 1 8.6346 -1.9306 1.5545
16 1 8.6158 -2.3860 -0.8274
17 7 3.5196 -1.2170 0.0016
18 6 2.2054 -1.1989 0.0011
19 6 1.4455 -2.5003 0.0005
20 1 -0.3633 0.0000 -1.0277
21 1 -0.3633 -0.8901 0.5138
22 1 -0.3634 0.8899 0.5138
23 1 1.6816 2.1447 0.0040
24 1 4.7481 2.6408 -1.0089
25 1 6.0418 -3.2973 0.6003
26 1 1.2619 -2.8142 1.0281
27 1 0.4940 -2.3651 -0.5137
28 1 2.0311 -3.2627 -0.5131
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238502145.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:34
Heat of formation + Delta-G solvation = -84.339303 kcal
Electronic energy + Delta-G solvation = -15741.324440 eV
Core-core repulsion = 12813.344302 eV
Total energy + Delta-G solvation = -2927.980138 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-48.02896 -46.04008 -38.57956 -34.16888 -32.30828 -31.65645 -27.99400 -27.66607
-25.09117 -23.17242 -21.24503 -19.64825 -17.66797 -16.55306 -16.33412 -15.63174
-15.09198 -14.56732 -14.02061 -13.49966 -12.87535 -12.68296 -12.55556 -12.44142
-12.12816 -11.99302 -11.81395 -11.49695 -11.21420 -11.04820 -11.00443 -10.93971
-10.43497 -10.26234 -9.68735 -9.34756 -8.23812 -7.70643 -7.49365 -6.55602
-4.62350 2.51103 2.81547 3.05908 3.11094 3.12948 3.89368 4.59190
4.78567 5.36710 5.53601 5.70378 5.84772 5.95502 5.99979 6.06989
6.27699 6.30646 6.32317 6.48625 6.58742 6.66142 6.86363 7.05755
7.24740 7.45996 7.58827 7.90596 8.15542 8.52968 8.77067 9.96000
10.19109
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.022293 B = 0.012929 C = 0.008331
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1255.680314 B = 2165.075453 C = 3359.996857
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C -0.292 4.292
3 C -0.012 4.012
4 C -0.344 4.344
5 C 0.337 3.663
6 F -0.222 7.222
7 F -0.200 7.200
8 C 0.278 3.722
9 C -0.421 4.421
10 H 0.096 0.904
11 C 0.069 3.931
12 N -0.712 5.712
13 Si 0.909 3.091
14 H -0.257 1.257
15 H -0.272 1.272
16 H -0.272 1.272
17 N -0.477 5.477
18 C 0.167 3.833
19 C -0.094 4.094
20 H 0.042 0.958
21 H 0.051 0.949
22 H 0.043 0.957
23 H 0.104 0.896
24 H 0.095 0.905
25 H 0.275 0.725
26 H 0.061 0.939
27 H 0.058 0.942
28 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.598 2.259 -1.508 3.759
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.297 4.297
3 C -0.036 4.036
4 C -0.350 4.350
5 C 0.283 3.717
6 F -0.204 7.204
7 F -0.181 7.181
8 C 0.154 3.846
9 C -0.451 4.451
10 H 0.114 0.886
11 C -0.157 4.157
12 N -0.332 5.332
13 Si 0.733 3.267
14 H -0.181 1.181
15 H -0.197 1.197
16 H -0.197 1.197
17 N -0.189 5.189
18 C 0.018 3.982
19 C -0.151 4.151
20 H 0.061 0.939
21 H 0.070 0.930
22 H 0.062 0.938
23 H 0.122 0.878
24 H 0.113 0.887
25 H 0.086 0.914
26 H 0.080 0.920
27 H 0.077 0.923
28 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -2.054 1.265 -1.425 2.802
hybrid contribution 0.370 0.847 0.183 0.943
sum -1.683 2.112 -1.242 2.973
Atomic orbital electron populations
1.20321 0.92971 1.00455 0.99740 1.19890 0.95074 0.93622 1.21091
1.20509 0.92626 0.96594 0.93897 1.20834 0.94308 0.94689 1.25130
1.19861 0.78324 0.83231 0.90279 1.92867 1.75020 1.60225 1.92240
1.92932 1.55546 1.96050 1.73589 1.18194 0.93579 0.85121 0.87695
1.20035 0.90225 0.95652 1.39179 0.88567 1.26123 1.00888 0.95258
0.93457 1.70100 1.37100 0.99411 1.26639 0.86229 0.81991 0.79763
0.78717 1.18089 1.19691 1.19719 1.68630 1.04102 1.28662 1.17493
1.21123 0.91541 0.93073 0.92443 1.20577 0.98240 0.94944 1.01383
0.93879 0.93047 0.93791 0.87796 0.88743 0.91408 0.91994 0.92322
0.91470
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.34 9.20 36.01 0.33 -1.01 15
2 C -0.29 -6.44 5.92 -104.16 -0.62 -7.06 15
3 C -0.01 -0.27 9.19 -39.35 -0.36 -0.63 15
4 C -0.34 -8.39 5.78 -103.74 -0.60 -8.99 15
5 C 0.34 7.20 5.13 36.01 0.18 7.39 15
6 F -0.22 -4.55 16.28 2.25 0.04 -4.52 15
7 F -0.20 -4.58 14.57 2.25 0.03 -4.55 15
8 C 0.28 7.51 6.50 -84.98 -0.55 6.96 15
9 C -0.42 -11.09 8.05 -37.71 -0.30 -11.40 15
10 H 0.10 2.40 5.70 -52.48 -0.30 2.10 15
11 C 0.07 1.73 5.49 -17.35 -0.10 1.64 15
12 N -0.71 -18.60 11.53 55.55 0.64 -17.96 15
13 Si 0.91 18.51 29.56 -169.99 -5.02 13.49 15
14 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15
15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15
16 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15
17 N -0.48 -12.93 7.87 -7.37 -0.06 -12.99 15
18 C 0.17 3.98 6.78 -82.58 -0.56 3.42 15
19 C -0.09 -1.81 9.35 36.01 0.34 -1.47 15
20 H 0.04 0.69 8.14 -51.93 -0.42 0.26 15
21 H 0.05 0.81 6.70 -51.93 -0.35 0.47 15
22 H 0.04 0.70 8.09 -51.93 -0.42 0.28 15
23 H 0.10 2.12 7.44 -52.48 -0.39 1.73 15
24 H 0.10 1.75 8.14 -51.93 -0.42 1.33 15
25 H 0.27 6.47 8.29 -40.82 -0.34 6.13 15
26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15
27 H 0.06 0.96 6.67 -51.93 -0.35 0.61 15
28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15
LS Contribution 247.99 15.07 3.74 3.74
Total: -1.00 -28.78 247.99 -5.50 -34.28
By element:
Atomic # 1 Polarization: 2.29 SS G_CDS: -2.63 Total: -0.34 kcal
Atomic # 6 Polarization: -8.92 SS G_CDS: -2.24 Total: -11.15 kcal
Atomic # 7 Polarization: -31.53 SS G_CDS: 0.58 Total: -30.95 kcal
Atomic # 9 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal
Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal
Total LS contribution 3.74 Total: 3.74 kcal
Total: -28.78 -5.50 -34.28 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238502145.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.060 kcal
(2) G-P(sol) polarization free energy of solvation -28.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.838 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.279 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds