Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38972 * 120.21948 * 2 1 4 4 C 1.38141 * 118.59057 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.51166 * 179.97438 * 4 3 2 6 6 F 1.39912 * 109.46687 * 19.04547 * 5 4 3 7 7 F 1.39895 * 109.47415 * 139.04037 * 5 4 3 8 8 C 1.40660 * 118.98346 * 359.97438 * 4 3 2 9 9 C 1.41396 * 119.82899 * 180.02562 * 8 4 3 10 10 H 1.08003 * 120.00173 * 349.21003 * 9 8 4 11 11 C 1.40038 * 119.99907 * 169.20224 * 9 8 4 12 12 N 1.30730 * 120.00151 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00058 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47265 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47206 * 120.00208 * 13 11 9 16 16 H 1.48506 * 109.47252 * 240.00335 * 13 11 9 17 17 N 1.33608 * 120.33968 * 0.02562 * 8 4 3 18 18 C 1.31430 * 121.51661 * 359.97438 * 17 8 4 19 19 C 1.50700 * 119.49303 * 179.97438 * 18 17 8 20 20 H 1.09000 * 109.46951 * 90.00230 * 1 2 3 21 21 H 1.09004 * 109.46912 * 209.99550 * 1 2 3 22 22 H 1.08994 * 109.47550 * 330.00070 * 1 2 3 23 23 H 1.08003 * 120.70081 * 0.24866 * 3 2 1 24 24 H 1.08999 * 109.47108 * 259.04772 * 5 4 3 25 25 H 0.97001 * 120.00281 * 179.97438 * 12 11 9 26 26 H 1.09006 * 109.46646 * 89.99940 * 19 18 17 27 27 H 1.08996 * 109.47164 * 210.00019 * 19 18 17 28 28 H 1.08997 * 109.47032 * 330.00724 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.2009 0.0000 4 6 3.5873 1.1616 0.0005 5 6 4.3891 2.4377 0.0000 6 9 3.5811 3.4961 0.4294 7 9 5.4802 2.3033 0.8651 8 6 4.2336 -0.0877 0.0016 9 6 5.6463 -0.1488 0.0027 10 1 6.2256 0.7458 -0.1723 11 6 6.2942 -1.3691 0.2310 12 7 5.5930 -2.4519 0.4426 13 14 8.1604 -1.4499 0.2318 14 1 8.7146 -0.0974 -0.0306 15 1 8.6346 -1.9306 1.5545 16 1 8.6158 -2.3860 -0.8274 17 7 3.5196 -1.2170 0.0016 18 6 2.2054 -1.1989 0.0011 19 6 1.4455 -2.5003 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 1.6816 2.1447 0.0040 24 1 4.7481 2.6408 -1.0089 25 1 6.0418 -3.2973 0.6003 26 1 1.2619 -2.8142 1.0281 27 1 0.4940 -2.3651 -0.5137 28 1 2.0311 -3.2627 -0.5131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238502145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = -100.548467 kcal Electronic energy + Delta-G solvation = -15742.027322 eV Core-core repulsion = 12813.344302 eV Total energy + Delta-G solvation = -2928.683020 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.73273 -47.75361 -40.37959 -35.96283 -34.06730 -33.42050 -29.62847 -29.43345 -26.75203 -24.91843 -23.03161 -21.40000 -19.52662 -18.24989 -18.05899 -17.36889 -16.83326 -16.33009 -15.71796 -15.14254 -14.58318 -14.39022 -14.23415 -14.17175 -13.63246 -13.50136 -13.43574 -13.18248 -12.84229 -12.71480 -12.66015 -12.46191 -12.23014 -11.92745 -11.41381 -11.13093 -10.06997 -9.55112 -9.30498 -8.38264 -6.53166 0.69553 1.03129 1.39544 1.50057 1.54934 2.20992 2.76612 3.12632 3.64684 3.72823 4.02049 4.17223 4.30634 4.33764 4.60276 4.66123 4.78325 4.89766 5.01938 5.08004 5.08611 5.21628 5.31217 5.50886 5.67732 5.82662 6.13117 6.27587 6.68047 6.88382 8.11833 8.39170 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.012929 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.680314 B = 2165.075453 C = 3359.996857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.288 4.288 3 C -0.024 4.024 4 C -0.363 4.363 5 C 0.339 3.661 6 F -0.216 7.216 7 F -0.211 7.211 8 C 0.246 3.754 9 C -0.456 4.456 10 H 0.100 0.900 11 C 0.025 3.975 12 N -0.752 5.752 13 Si 0.983 3.017 14 H -0.254 1.254 15 H -0.268 1.268 16 H -0.263 1.263 17 N -0.514 5.514 18 C 0.138 3.862 19 C -0.086 4.086 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.127 0.873 24 H 0.126 0.874 25 H 0.280 0.720 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 2.732 -1.761 4.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.292 4.292 3 C -0.049 4.049 4 C -0.368 4.368 5 C 0.285 3.715 6 F -0.198 7.198 7 F -0.192 7.192 8 C 0.121 3.879 9 C -0.486 4.486 10 H 0.118 0.882 11 C -0.197 4.197 12 N -0.374 5.374 13 Si 0.803 3.197 14 H -0.177 1.177 15 H -0.193 1.193 16 H -0.187 1.187 17 N -0.227 5.227 18 C -0.009 4.009 19 C -0.144 4.144 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.145 0.855 24 H 0.144 0.856 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.867 1.744 -1.681 3.753 hybrid contribution 0.426 0.746 0.263 0.898 sum -2.441 2.490 -1.418 3.764 Atomic orbital electron populations 1.20381 0.89273 1.02095 1.01447 1.20478 0.97815 0.92783 1.18130 1.20890 0.92315 0.98004 0.93674 1.21181 0.95535 0.95162 1.24935 1.19995 0.77765 0.82363 0.91352 1.92869 1.74897 1.59674 1.92331 1.92903 1.56069 1.96103 1.74165 1.18637 0.94415 0.86274 0.88543 1.20309 0.90617 0.96558 1.41090 0.88239 1.26999 1.05646 0.94513 0.92546 1.70183 1.39140 1.00078 1.27993 0.85142 0.75796 0.79867 0.78900 1.17707 1.19266 1.18738 1.68595 1.05865 1.29464 1.18796 1.21905 0.91175 0.95632 0.92210 1.20609 0.98891 0.92542 1.02319 0.91954 0.91378 0.92273 0.85481 0.85641 0.90890 0.90986 0.89004 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.31 9.20 71.24 0.66 -1.65 15 2 C -0.29 -12.18 5.92 -19.57 -0.12 -12.29 15 3 C -0.02 -1.07 9.19 22.42 0.21 -0.87 15 4 C -0.36 -17.63 5.78 -19.29 -0.11 -17.74 15 5 C 0.34 14.20 5.13 71.24 0.37 14.57 15 6 F -0.22 -8.52 16.28 44.97 0.73 -7.79 15 7 F -0.21 -9.65 14.57 44.97 0.66 -8.99 15 8 C 0.25 13.54 6.50 40.24 0.26 13.80 15 9 C -0.46 -24.53 8.05 23.48 0.19 -24.34 15 10 H 0.10 5.06 5.70 -2.91 -0.02 5.04 15 11 C 0.03 1.29 5.49 85.29 0.47 1.76 15 12 N -0.75 -40.35 11.53 21.84 0.25 -40.10 15 13 Si 0.98 38.40 29.56 68.60 2.03 40.43 15 14 H -0.25 -9.62 7.11 99.48 0.71 -8.91 15 15 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 16 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15 17 N -0.51 -28.42 7.87 -177.22 -1.39 -29.82 15 18 C 0.14 6.51 6.78 42.74 0.29 6.80 15 19 C -0.09 -3.20 9.35 71.24 0.67 -2.53 15 20 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.07 1.89 6.70 -2.39 -0.02 1.87 15 22 H 0.06 1.66 8.09 -2.39 -0.02 1.64 15 23 H 0.13 4.88 7.44 -2.91 -0.02 4.86 15 24 H 0.13 4.48 8.14 -2.39 -0.02 4.46 15 25 H 0.28 13.54 8.29 -92.71 -0.77 12.77 15 26 H 0.07 2.50 8.14 -2.38 -0.02 2.48 15 27 H 0.09 2.72 6.67 -2.39 -0.02 2.71 15 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 15 Total: -1.00 -62.85 247.99 6.33 -56.52 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.18 Total: 12.26 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 2.87 Total: -22.51 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -1.14 Total: -69.92 kcal Atomic # 9 Polarization: -18.17 SS G_CDS: 1.39 Total: -16.78 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -62.85 6.33 -56.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238502145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.029 kcal (2) G-P(sol) polarization free energy of solvation -62.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds