Wall clock time and date at job start Mon Mar 30 2020 02:55:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38972 * 120.21948 * 2 1
4 4 C 1.38141 * 118.59057 * 179.97438 * 3 2 1
5 5 C 1.50705 * 120.51166 * 179.97438 * 4 3 2
6 6 F 1.39912 * 109.46687 * 19.04547 * 5 4 3
7 7 F 1.39895 * 109.47415 * 139.04037 * 5 4 3
8 8 C 1.40660 * 118.98346 * 359.97438 * 4 3 2
9 9 C 1.41396 * 119.82899 * 180.02562 * 8 4 3
10 10 H 1.08003 * 120.00173 * 349.21003 * 9 8 4
11 11 C 1.40038 * 119.99907 * 169.20224 * 9 8 4
12 12 N 1.30730 * 120.00151 * 0.02562 * 11 9 8
13 13 Si 1.86799 * 120.00058 * 179.97438 * 11 9 8
14 14 H 1.48502 * 109.47265 * 0.02562 * 13 11 9
15 15 H 1.48502 * 109.47206 * 120.00208 * 13 11 9
16 16 H 1.48506 * 109.47252 * 240.00335 * 13 11 9
17 17 N 1.33608 * 120.33968 * 0.02562 * 8 4 3
18 18 C 1.31430 * 121.51661 * 359.97438 * 17 8 4
19 19 C 1.50700 * 119.49303 * 179.97438 * 18 17 8
20 20 H 1.09000 * 109.46951 * 90.00230 * 1 2 3
21 21 H 1.09004 * 109.46912 * 209.99550 * 1 2 3
22 22 H 1.08994 * 109.47550 * 330.00070 * 1 2 3
23 23 H 1.08003 * 120.70081 * 0.24866 * 3 2 1
24 24 H 1.08999 * 109.47108 * 259.04772 * 5 4 3
25 25 H 0.97001 * 120.00281 * 179.97438 * 12 11 9
26 26 H 1.09006 * 109.46646 * 89.99940 * 19 18 17
27 27 H 1.08996 * 109.47164 * 210.00019 * 19 18 17
28 28 H 1.08997 * 109.47032 * 330.00724 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2065 1.2009 0.0000
4 6 3.5873 1.1616 0.0005
5 6 4.3891 2.4377 0.0000
6 9 3.5811 3.4961 0.4294
7 9 5.4802 2.3033 0.8651
8 6 4.2336 -0.0877 0.0016
9 6 5.6463 -0.1488 0.0027
10 1 6.2256 0.7458 -0.1723
11 6 6.2942 -1.3691 0.2310
12 7 5.5930 -2.4519 0.4426
13 14 8.1604 -1.4499 0.2318
14 1 8.7146 -0.0974 -0.0306
15 1 8.6346 -1.9306 1.5545
16 1 8.6158 -2.3860 -0.8274
17 7 3.5196 -1.2170 0.0016
18 6 2.2054 -1.1989 0.0011
19 6 1.4455 -2.5003 0.0005
20 1 -0.3633 0.0000 -1.0277
21 1 -0.3633 -0.8901 0.5138
22 1 -0.3634 0.8899 0.5138
23 1 1.6816 2.1447 0.0040
24 1 4.7481 2.6408 -1.0089
25 1 6.0418 -3.2973 0.6003
26 1 1.2619 -2.8142 1.0281
27 1 0.4940 -2.3651 -0.5137
28 1 2.0311 -3.2627 -0.5131
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238502145.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:34
Heat of formation + Delta-G solvation = -100.548467 kcal
Electronic energy + Delta-G solvation = -15742.027322 eV
Core-core repulsion = 12813.344302 eV
Total energy + Delta-G solvation = -2928.683020 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-49.73273 -47.75361 -40.37959 -35.96283 -34.06730 -33.42050 -29.62847 -29.43345
-26.75203 -24.91843 -23.03161 -21.40000 -19.52662 -18.24989 -18.05899 -17.36889
-16.83326 -16.33009 -15.71796 -15.14254 -14.58318 -14.39022 -14.23415 -14.17175
-13.63246 -13.50136 -13.43574 -13.18248 -12.84229 -12.71480 -12.66015 -12.46191
-12.23014 -11.92745 -11.41381 -11.13093 -10.06997 -9.55112 -9.30498 -8.38264
-6.53166 0.69553 1.03129 1.39544 1.50057 1.54934 2.20992 2.76612
3.12632 3.64684 3.72823 4.02049 4.17223 4.30634 4.33764 4.60276
4.66123 4.78325 4.89766 5.01938 5.08004 5.08611 5.21628 5.31217
5.50886 5.67732 5.82662 6.13117 6.27587 6.68047 6.88382 8.11833
8.39170
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.022293 B = 0.012929 C = 0.008331
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1255.680314 B = 2165.075453 C = 3359.996857
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C -0.288 4.288
3 C -0.024 4.024
4 C -0.363 4.363
5 C 0.339 3.661
6 F -0.216 7.216
7 F -0.211 7.211
8 C 0.246 3.754
9 C -0.456 4.456
10 H 0.100 0.900
11 C 0.025 3.975
12 N -0.752 5.752
13 Si 0.983 3.017
14 H -0.254 1.254
15 H -0.268 1.268
16 H -0.263 1.263
17 N -0.514 5.514
18 C 0.138 3.862
19 C -0.086 4.086
20 H 0.062 0.938
21 H 0.067 0.933
22 H 0.058 0.942
23 H 0.127 0.873
24 H 0.126 0.874
25 H 0.280 0.720
26 H 0.072 0.928
27 H 0.091 0.909
28 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.374 2.732 -1.761 4.685
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.292 4.292
3 C -0.049 4.049
4 C -0.368 4.368
5 C 0.285 3.715
6 F -0.198 7.198
7 F -0.192 7.192
8 C 0.121 3.879
9 C -0.486 4.486
10 H 0.118 0.882
11 C -0.197 4.197
12 N -0.374 5.374
13 Si 0.803 3.197
14 H -0.177 1.177
15 H -0.193 1.193
16 H -0.187 1.187
17 N -0.227 5.227
18 C -0.009 4.009
19 C -0.144 4.144
20 H 0.080 0.920
21 H 0.086 0.914
22 H 0.077 0.923
23 H 0.145 0.855
24 H 0.144 0.856
25 H 0.091 0.909
26 H 0.090 0.910
27 H 0.110 0.890
28 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -2.867 1.744 -1.681 3.753
hybrid contribution 0.426 0.746 0.263 0.898
sum -2.441 2.490 -1.418 3.764
Atomic orbital electron populations
1.20381 0.89273 1.02095 1.01447 1.20478 0.97815 0.92783 1.18130
1.20890 0.92315 0.98004 0.93674 1.21181 0.95535 0.95162 1.24935
1.19995 0.77765 0.82363 0.91352 1.92869 1.74897 1.59674 1.92331
1.92903 1.56069 1.96103 1.74165 1.18637 0.94415 0.86274 0.88543
1.20309 0.90617 0.96558 1.41090 0.88239 1.26999 1.05646 0.94513
0.92546 1.70183 1.39140 1.00078 1.27993 0.85142 0.75796 0.79867
0.78900 1.17707 1.19266 1.18738 1.68595 1.05865 1.29464 1.18796
1.21905 0.91175 0.95632 0.92210 1.20609 0.98891 0.92542 1.02319
0.91954 0.91378 0.92273 0.85481 0.85641 0.90890 0.90986 0.89004
0.92607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -2.31 9.20 71.24 0.66 -1.65 15
2 C -0.29 -12.18 5.92 -19.57 -0.12 -12.29 15
3 C -0.02 -1.07 9.19 22.42 0.21 -0.87 15
4 C -0.36 -17.63 5.78 -19.29 -0.11 -17.74 15
5 C 0.34 14.20 5.13 71.24 0.37 14.57 15
6 F -0.22 -8.52 16.28 44.97 0.73 -7.79 15
7 F -0.21 -9.65 14.57 44.97 0.66 -8.99 15
8 C 0.25 13.54 6.50 40.24 0.26 13.80 15
9 C -0.46 -24.53 8.05 23.48 0.19 -24.34 15
10 H 0.10 5.06 5.70 -2.91 -0.02 5.04 15
11 C 0.03 1.29 5.49 85.29 0.47 1.76 15
12 N -0.75 -40.35 11.53 21.84 0.25 -40.10 15
13 Si 0.98 38.40 29.56 68.60 2.03 40.43 15
14 H -0.25 -9.62 7.11 99.48 0.71 -8.91 15
15 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15
16 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15
17 N -0.51 -28.42 7.87 -177.22 -1.39 -29.82 15
18 C 0.14 6.51 6.78 42.74 0.29 6.80 15
19 C -0.09 -3.20 9.35 71.24 0.67 -2.53 15
20 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15
21 H 0.07 1.89 6.70 -2.39 -0.02 1.87 15
22 H 0.06 1.66 8.09 -2.39 -0.02 1.64 15
23 H 0.13 4.88 7.44 -2.91 -0.02 4.86 15
24 H 0.13 4.48 8.14 -2.39 -0.02 4.46 15
25 H 0.28 13.54 8.29 -92.71 -0.77 12.77 15
26 H 0.07 2.50 8.14 -2.38 -0.02 2.48 15
27 H 0.09 2.72 6.67 -2.39 -0.02 2.71 15
28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 15
Total: -1.00 -62.85 247.99 6.33 -56.52
By element:
Atomic # 1 Polarization: 11.08 SS G_CDS: 1.18 Total: 12.26 kcal
Atomic # 6 Polarization: -25.39 SS G_CDS: 2.87 Total: -22.51 kcal
Atomic # 7 Polarization: -68.78 SS G_CDS: -1.14 Total: -69.92 kcal
Atomic # 9 Polarization: -18.17 SS G_CDS: 1.39 Total: -16.78 kcal
Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal
Total: -62.85 6.33 -56.52 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238502145.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.029 kcal
(2) G-P(sol) polarization free energy of solvation -62.851 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.880 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.520 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.548 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds