Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38186 * 120.51049 * 2 1 4 4 C 1.38929 * 118.58924 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.22081 * 180.02562 * 4 3 2 6 6 C 1.38802 * 119.55800 * 359.97438 * 4 3 2 7 7 C 1.50701 * 119.49271 * 180.02562 * 6 4 3 8 8 F 1.39901 * 109.46560 * 184.81494 * 7 6 4 9 9 F 1.39896 * 109.46952 * 304.81012 * 7 6 4 10 10 N 1.31397 * 121.00740 * 359.73574 * 6 4 3 11 11 C 1.33631 * 121.51779 * 0.53014 * 10 6 4 12 12 C 1.41403 * 119.83069 * 179.74949 * 11 10 6 13 13 H 1.08002 * 120.00199 * 188.78661 * 12 11 10 14 14 C 1.40034 * 119.99854 * 8.78725 * 12 11 10 15 15 N 1.30736 * 120.00277 * 196.00335 * 14 12 11 16 16 Si 1.86806 * 119.99974 * 16.00688 * 14 12 11 17 17 H 1.48497 * 109.46753 * 270.00177 * 16 14 12 18 18 H 1.48496 * 109.47013 * 29.99738 * 16 14 12 19 19 H 1.48493 * 109.47032 * 149.99898 * 16 14 12 20 20 H 1.09002 * 109.47521 * 269.98723 * 1 2 3 21 21 H 1.09003 * 109.46633 * 29.97739 * 1 2 3 22 22 H 1.08995 * 109.47296 * 149.98388 * 1 2 3 23 23 H 1.07997 * 120.70876 * 0.03770 * 3 2 1 24 24 H 1.09006 * 109.46816 * 85.46298 * 5 4 3 25 25 H 1.08996 * 109.47397 * 205.46256 * 5 4 3 26 26 H 1.09000 * 109.47506 * 325.46672 * 5 4 3 27 27 H 1.08993 * 109.47207 * 64.81609 * 7 6 4 28 28 H 0.97003 * 119.99643 * 354.92210 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1905 0.0000 4 6 3.5970 1.1439 -0.0005 5 6 4.3988 2.4200 0.0000 6 6 4.2409 -0.0857 -0.0005 7 6 5.7471 -0.1345 -0.0005 8 9 6.1705 -1.4633 -0.1112 9 9 6.2375 0.6029 -1.0835 10 7 3.5572 -1.2078 0.0052 11 6 2.2209 -1.2116 0.0006 12 6 1.5210 -2.4403 0.0017 13 1 0.4510 -2.4524 -0.1448 14 6 2.2152 -3.6413 0.1927 15 7 1.6483 -4.7795 -0.1111 16 14 3.9514 -3.6172 0.8818 17 1 4.9256 -3.5201 -0.2347 18 1 4.1108 -2.4463 1.7811 19 1 4.1977 -4.8660 1.6466 20 1 -0.3634 -0.0002 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5141 23 1 1.6886 2.1371 0.0006 24 1 4.5236 2.7702 1.0247 25 1 5.3776 2.2344 -0.4423 26 1 3.8751 3.1785 -0.5818 27 1 6.1244 0.2908 0.9294 28 1 0.7222 -4.7984 -0.3990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238535457.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = -111.322680 kcal Electronic energy + Delta-G solvation = -15915.248531 eV Core-core repulsion = 12986.098306 eV Total energy + Delta-G solvation = -2929.150225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.98183 -48.00479 -40.81304 -36.14524 -34.52920 -34.04042 -29.88849 -29.23377 -27.01269 -24.75119 -23.41909 -21.37693 -20.49056 -18.58829 -18.43388 -18.04189 -16.93809 -16.02222 -15.45008 -15.13528 -15.06160 -14.81299 -14.61259 -14.45602 -13.95365 -13.81065 -13.56801 -13.39318 -13.15562 -12.90990 -12.65991 -12.47061 -12.16088 -11.67666 -11.51100 -11.06978 -10.20714 -9.84191 -9.62780 -9.30409 -6.75008 0.40048 0.71071 1.55763 1.64227 1.94136 2.38126 2.51137 2.74608 3.18624 3.39654 3.64226 4.04655 4.15432 4.33549 4.45156 4.47114 4.69192 4.82683 4.87607 4.92113 4.98022 5.14116 5.34477 5.41654 5.55941 5.62906 5.82868 6.02208 6.34657 6.61996 7.45713 7.93615 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.015065 C = 0.009632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.880926 B = 1858.109745 C = 2906.411381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.226 4.226 3 C -0.048 4.048 4 C -0.227 4.227 5 C -0.100 4.100 6 C 0.058 3.942 7 C 0.320 3.680 8 F -0.208 7.208 9 F -0.196 7.196 10 N -0.567 5.567 11 C 0.228 3.772 12 C -0.509 4.509 13 H 0.082 0.918 14 C 0.023 3.977 15 N -0.827 5.827 16 Si 1.167 2.833 17 H -0.284 1.284 18 H -0.285 1.285 19 H -0.325 1.325 20 H 0.062 0.938 21 H 0.076 0.924 22 H 0.045 0.955 23 H 0.150 0.850 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.165 0.835 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 12.165 2.127 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.230 4.230 3 C -0.072 4.072 4 C -0.232 4.232 5 C -0.157 4.157 6 C -0.083 4.083 7 C 0.266 3.734 8 F -0.189 7.189 9 F -0.177 7.177 10 N -0.285 5.285 11 C 0.103 3.897 12 C -0.541 4.541 13 H 0.100 0.900 14 C -0.195 4.195 15 N -0.451 5.451 16 Si 0.999 3.001 17 H -0.211 1.211 18 H -0.212 1.212 19 H -0.258 1.258 20 H 0.080 0.920 21 H 0.095 0.905 22 H 0.064 0.936 23 H 0.167 0.833 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.182 0.818 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.809 10.335 2.403 12.097 hybrid contribution -2.176 1.041 -0.762 2.530 sum 3.633 11.376 1.641 12.054 Atomic orbital electron populations 1.20395 0.90164 1.01653 1.01429 1.20973 0.97727 0.93211 1.11130 1.21206 0.93053 0.97473 0.95427 1.20274 0.94838 0.95071 1.13010 1.20750 0.99603 0.92612 1.02732 1.21601 0.95336 0.90637 1.00680 1.20657 0.88254 0.74516 0.89984 1.92963 1.91026 1.37955 1.96965 1.92900 1.88694 1.76339 1.59755 1.66409 1.09094 1.29379 1.23569 1.18626 0.87191 0.93981 0.89945 1.20775 0.96687 0.91777 1.44863 0.90000 1.28232 1.09512 0.91073 0.90684 1.70635 1.14980 1.29258 1.30208 0.81867 0.69815 0.71568 0.76887 1.21104 1.21236 1.25761 0.91953 0.90502 0.93570 0.83268 0.90537 0.90834 0.90856 0.81784 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.88 9.58 71.23 0.68 -2.20 15 2 C -0.23 -9.80 5.96 -19.29 -0.11 -9.91 15 3 C -0.05 -1.75 9.54 22.42 0.21 -1.54 15 4 C -0.23 -8.20 5.89 -19.56 -0.12 -8.32 15 5 C -0.10 -2.55 9.65 71.24 0.69 -1.86 15 6 C 0.06 2.47 6.54 42.76 0.28 2.75 15 7 C 0.32 11.20 4.91 71.24 0.35 11.55 15 8 F -0.21 -8.65 14.72 44.97 0.66 -7.98 15 9 F -0.20 -6.47 14.97 44.97 0.67 -5.79 15 10 N -0.57 -28.85 4.50 -177.21 -0.80 -29.65 15 11 C 0.23 11.76 6.27 40.23 0.25 12.01 15 12 C -0.51 -28.05 9.07 23.49 0.21 -27.84 15 13 H 0.08 4.47 6.18 -2.91 -0.02 4.45 15 14 C 0.02 1.29 5.51 85.29 0.47 1.76 15 15 N -0.83 -46.75 13.65 21.84 0.30 -46.45 15 16 Si 1.17 59.63 24.62 68.60 1.69 61.32 15 17 H -0.28 -14.83 6.37 99.48 0.63 -14.20 15 18 H -0.28 -14.31 6.55 99.48 0.65 -13.65 15 19 H -0.32 -16.10 7.11 99.48 0.71 -15.40 15 20 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 21 H 0.08 2.25 8.10 -2.39 -0.02 2.24 15 22 H 0.05 1.82 6.25 -2.39 -0.01 1.80 15 23 H 0.15 4.23 8.06 -2.91 -0.02 4.20 15 24 H 0.08 1.63 8.14 -2.38 -0.02 1.61 15 25 H 0.07 1.83 5.19 -2.39 -0.01 1.81 15 26 H 0.07 1.63 8.12 -2.39 -0.02 1.61 15 27 H 0.17 4.10 8.14 -2.39 -0.02 4.09 15 28 H 0.28 15.33 8.73 -92.71 -0.81 14.52 15 Total: -1.00 -63.43 240.44 6.46 -56.97 By element: Atomic # 1 Polarization: -5.83 SS G_CDS: 1.02 Total: -4.81 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 2.92 Total: -23.60 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -0.50 Total: -76.10 kcal Atomic # 9 Polarization: -15.11 SS G_CDS: 1.34 Total: -13.78 kcal Atomic # 14 Polarization: 59.63 SS G_CDS: 1.69 Total: 61.32 kcal Total: -63.43 6.46 -56.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238535457.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.353 kcal (2) G-P(sol) polarization free energy of solvation -63.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds