Wall clock time and date at job start Mon Mar 30 2020 02:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48499 * 109.47195 * 239.99746 * 3 2 1 5 5 H 1.48506 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46974 * 119.99860 * 3 2 1 7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46912 * 180.02562 * 11 10 9 13 13 C 1.38205 * 119.99664 * 264.72412 * 12 11 10 14 14 C 1.38432 * 119.99473 * 179.76905 * 13 12 11 15 15 F 1.35106 * 119.99999 * 180.27208 * 14 13 12 16 16 C 1.38472 * 120.00308 * 0.53097 * 14 13 12 17 17 C 1.38165 * 119.99635 * 359.72209 * 16 14 13 18 18 C 1.38420 * 120.00085 * 85.00081 * 12 11 10 19 19 F 1.35103 * 120.00346 * 359.97438 * 18 12 11 20 20 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 22 22 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 23 23 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 24 24 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 25 25 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 26 26 H 1.07999 * 120.00330 * 0.02562 * 13 12 11 27 27 H 1.08000 * 120.00156 * 179.70008 * 16 14 13 28 28 H 1.07995 * 119.99700 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.8176 -6.1248 0.0007 13 6 2.0677 -6.7788 -1.1908 14 6 2.7641 -7.9752 -1.1906 15 9 3.0135 -8.6119 -2.3559 16 6 3.2005 -8.5222 0.0043 17 6 2.9458 -7.8709 1.1959 18 6 2.2542 -6.6713 1.1952 19 9 2.0053 -6.0345 2.3605 20 1 -0.4850 0.8400 0.0004 21 1 0.3556 -2.3881 -0.0005 22 1 2.6849 -3.7144 0.8895 23 1 2.6849 -3.7145 -0.8904 24 1 0.4376 -4.7618 0.8903 25 1 0.4371 -4.7622 -0.8897 26 1 1.7236 -6.3544 -2.1224 27 1 3.7396 -9.4581 0.0048 28 1 3.2858 -8.2978 2.1279 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258849564.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:40 Heat of formation + Delta-G solvation = -63.500700 kcal Electronic energy + Delta-G solvation = -14780.425381 eV Core-core repulsion = 11853.348872 eV Total energy + Delta-G solvation = -2927.076508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.00059 -48.82598 -39.02341 -35.30135 -32.95572 -30.88584 -30.06511 -27.71471 -24.21873 -23.00674 -22.15305 -20.91137 -17.70132 -17.34470 -17.22155 -16.81678 -15.89237 -15.33632 -14.72346 -14.51325 -14.27989 -13.92073 -13.62389 -13.40048 -13.12514 -12.60138 -12.48179 -12.05918 -11.18956 -11.09529 -10.98657 -10.75250 -10.67774 -10.11484 -9.72761 -9.13465 -8.87132 -8.53360 -6.93515 -5.76081 -3.05431 0.88825 0.95532 3.28887 3.45352 3.49232 3.50625 4.06275 4.17724 4.46149 4.58857 4.67467 4.90435 5.07762 5.47895 5.57572 5.61595 5.78430 5.84046 5.89940 5.98468 6.15955 6.17524 6.26999 6.71915 6.78436 6.81692 7.70071 8.42489 9.53598 10.09848 10.45161 11.46807 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.041874 B = 0.005395 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.515879 B = 5189.168933 C = 5491.905937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.094 4.094 12 C -0.069 4.069 13 C -0.123 4.123 14 C 0.088 3.912 15 F -0.139 7.139 16 C -0.137 4.137 17 C -0.126 4.126 18 C 0.093 3.907 19 F -0.129 7.129 20 H 0.256 0.744 21 H 0.384 0.616 22 H 0.021 0.979 23 H 0.022 0.978 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.146 0.854 27 H 0.142 0.858 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 -17.714 0.099 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.033 3.967 11 C -0.131 4.131 12 C -0.071 4.071 13 C -0.142 4.142 14 C 0.068 3.932 15 F -0.117 7.117 16 C -0.155 4.155 17 C -0.145 4.145 18 C 0.073 3.927 19 F -0.107 7.107 20 H 0.066 0.934 21 H 0.218 0.782 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.164 0.836 27 H 0.159 0.841 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.649 -17.575 0.101 18.180 hybrid contribution 0.198 0.885 0.007 0.906 sum 4.847 -16.691 0.108 17.381 Atomic orbital electron populations 1.69648 1.05126 1.25832 1.57652 1.24752 0.95553 0.97727 1.02913 0.86240 0.78511 0.83386 0.77887 1.21222 1.21635 1.21217 1.19188 0.91053 0.84069 1.42914 0.91182 1.42327 1.05895 0.99865 1.89638 1.20572 0.93025 0.84863 0.98209 1.20842 0.98283 0.89937 1.04051 1.19911 0.98670 0.97517 0.90994 1.20996 0.99910 0.94041 0.99207 1.17657 1.00956 0.92995 0.81570 1.91505 1.92530 1.81262 1.46420 1.20896 1.02567 1.01576 0.90502 1.20954 0.99887 0.94362 0.99252 1.17593 1.00748 0.92632 0.81706 1.91541 1.92212 1.81274 1.45678 0.93416 0.78196 0.96102 0.96062 0.90000 0.89955 0.83598 0.84058 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.85 15 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 15 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 15 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 15 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 15 9 N -0.73 -19.08 5.60 -59.91 -0.34 -19.42 15 10 C 0.16 3.35 6.24 -4.04 -0.03 3.32 15 11 C -0.09 -1.55 5.23 -27.88 -0.15 -1.70 15 12 C -0.07 -0.99 5.14 -104.57 -0.54 -1.52 15 13 C -0.12 -1.55 9.66 -39.52 -0.38 -1.94 15 14 C 0.09 1.03 7.30 -39.42 -0.29 0.74 15 15 F -0.14 -1.67 17.27 2.25 0.04 -1.63 15 16 C -0.14 -1.38 10.02 -39.52 -0.40 -1.78 15 17 C -0.13 -1.35 10.02 -39.52 -0.40 -1.74 15 18 C 0.09 1.27 7.24 -39.43 -0.29 0.98 15 19 F -0.13 -1.98 16.56 2.25 0.04 -1.94 15 20 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 21 H 0.38 10.37 7.67 -40.82 -0.31 10.05 15 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 24 H 0.08 1.39 7.79 -51.93 -0.40 0.99 15 25 H 0.08 1.29 8.05 -51.93 -0.42 0.87 15 26 H 0.15 1.69 8.06 -52.49 -0.42 1.27 15 27 H 0.14 1.05 8.06 -52.49 -0.42 0.62 15 28 H 0.14 1.17 8.06 -52.49 -0.42 0.75 15 LS Contribution 259.82 15.07 3.92 3.92 Total: -1.00 -31.01 259.82 -6.14 -37.15 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -2.80 Total: 3.31 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.70 Total: -11.19 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.39 Total: -47.27 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.08 Total: -3.57 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.01 -6.14 -37.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258849564.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.348 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds