Wall clock time and date at job start Mon Mar 30 2020 02:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48499 * 109.47195 * 239.99746 * 3 2 1 5 5 H 1.48506 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46974 * 119.99860 * 3 2 1 7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46912 * 180.02562 * 11 10 9 13 13 C 1.38205 * 119.99664 * 264.72412 * 12 11 10 14 14 C 1.38432 * 119.99473 * 179.76905 * 13 12 11 15 15 F 1.35106 * 119.99999 * 180.27208 * 14 13 12 16 16 C 1.38472 * 120.00308 * 0.53097 * 14 13 12 17 17 C 1.38165 * 119.99635 * 359.72209 * 16 14 13 18 18 C 1.38420 * 120.00085 * 85.00081 * 12 11 10 19 19 F 1.35103 * 120.00346 * 359.97438 * 18 12 11 20 20 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 22 22 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 23 23 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 24 24 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 25 25 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 26 26 H 1.07999 * 120.00330 * 0.02562 * 13 12 11 27 27 H 1.08000 * 120.00156 * 179.70008 * 16 14 13 28 28 H 1.07995 * 119.99700 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.8176 -6.1248 0.0007 13 6 2.0677 -6.7788 -1.1908 14 6 2.7641 -7.9752 -1.1906 15 9 3.0135 -8.6119 -2.3559 16 6 3.2005 -8.5222 0.0043 17 6 2.9458 -7.8709 1.1959 18 6 2.2542 -6.6713 1.1952 19 9 2.0053 -6.0345 2.3605 20 1 -0.4850 0.8400 0.0004 21 1 0.3556 -2.3881 -0.0005 22 1 2.6849 -3.7144 0.8895 23 1 2.6849 -3.7145 -0.8904 24 1 0.4376 -4.7618 0.8903 25 1 0.4371 -4.7622 -0.8897 26 1 1.7236 -6.3544 -2.1224 27 1 3.7396 -9.4581 0.0048 28 1 3.2858 -8.2978 2.1279 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258849564.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:40 Heat of formation + Delta-G solvation = -82.027407 kcal Electronic energy + Delta-G solvation = -14781.228759 eV Core-core repulsion = 11853.348872 eV Total energy + Delta-G solvation = -2927.879887 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.93152 -49.92625 -40.02148 -37.04759 -34.57980 -32.57399 -31.13140 -29.20656 -26.00588 -24.07108 -23.65611 -22.24890 -19.32670 -18.56532 -18.22933 -18.07688 -16.98693 -16.64554 -16.33371 -15.56491 -15.51829 -15.37208 -15.24193 -15.06395 -14.25768 -13.86260 -13.64186 -13.28945 -12.99136 -12.84552 -12.47494 -12.31658 -12.14964 -12.02675 -11.74905 -10.97142 -10.11383 -9.53567 -9.06542 -7.98204 -5.28837 -0.08341 0.03260 1.46301 1.50053 1.56303 2.33629 2.54506 3.11456 3.21341 3.35057 3.47399 3.65814 3.98703 4.10873 4.21069 4.30142 4.32110 4.63371 4.80942 4.92545 4.96021 5.02639 5.04251 5.17535 5.31326 5.45102 5.78891 6.23483 7.29783 8.02395 8.27711 9.25108 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.041874 B = 0.005395 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.515879 B = 5189.168933 C = 5491.905937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.978 3.022 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.254 4.254 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.162 3.838 11 C -0.080 4.080 12 C -0.087 4.087 13 C -0.126 4.126 14 C 0.083 3.917 15 F -0.139 7.139 16 C -0.119 4.119 17 C -0.114 4.114 18 C 0.073 3.927 19 F -0.145 7.145 20 H 0.253 0.747 21 H 0.376 0.624 22 H 0.013 0.987 23 H 0.024 0.976 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.151 0.849 27 H 0.177 0.823 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.968 -19.110 0.068 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.036 3.964 11 C -0.117 4.117 12 C -0.089 4.089 13 C -0.145 4.145 14 C 0.064 3.936 15 F -0.118 7.118 16 C -0.137 4.137 17 C -0.132 4.132 18 C 0.053 3.947 19 F -0.123 7.123 20 H 0.062 0.938 21 H 0.208 0.792 22 H 0.031 0.969 23 H 0.042 0.958 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.169 0.831 27 H 0.195 0.805 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.122 -19.006 0.067 19.968 hybrid contribution -0.206 1.193 0.002 1.211 sum 5.916 -17.813 0.069 18.770 Atomic orbital electron populations 1.69807 1.06651 1.26404 1.59022 1.25629 0.96491 1.01260 1.03207 0.85159 0.77228 0.78760 0.78288 1.20159 1.21810 1.20348 1.19602 0.91535 0.85329 1.42083 0.90748 1.42546 1.05735 1.01105 1.89600 1.20660 0.93683 0.84454 0.97623 1.20580 0.97429 0.89894 1.03838 1.19663 1.00192 0.96946 0.92100 1.21037 1.00056 0.94564 0.98830 1.17775 1.00932 0.92732 0.82197 1.91509 1.92503 1.81145 1.46641 1.21286 1.00964 1.02196 0.89254 1.21265 0.98285 0.92837 1.00862 1.17926 1.01919 0.93892 0.80928 1.91500 1.92529 1.81833 1.46464 0.93780 0.79218 0.96875 0.95766 0.90984 0.89444 0.83124 0.80523 0.80860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.16 13.06 21.65 0.28 -59.88 15 2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 15 3 Si 0.98 46.72 29.55 68.60 2.03 48.74 15 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 15 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 7 C -0.25 -14.69 9.99 84.03 0.84 -13.85 15 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 15 9 N -0.75 -39.65 5.60 -343.46 -1.92 -41.57 15 10 C 0.16 6.85 6.24 86.38 0.54 7.39 15 11 C -0.08 -2.68 5.23 29.85 0.16 -2.53 15 12 C -0.09 -2.43 5.14 -19.83 -0.10 -2.54 15 13 C -0.13 -3.04 9.66 22.31 0.22 -2.82 15 14 C 0.08 1.74 7.30 22.37 0.16 1.91 15 15 F -0.14 -3.01 17.27 44.97 0.78 -2.24 15 16 C -0.12 -1.95 10.02 22.31 0.22 -1.73 15 17 C -0.11 -2.09 10.02 22.31 0.22 -1.87 15 18 C 0.07 1.90 7.24 22.37 0.16 2.06 15 19 F -0.14 -4.41 16.56 44.97 0.74 -3.66 15 20 H 0.25 15.18 8.31 -92.71 -0.77 14.41 15 21 H 0.38 20.86 7.67 -92.70 -0.71 20.15 15 22 H 0.01 0.58 8.14 -2.39 -0.02 0.56 15 23 H 0.02 1.02 8.14 -2.39 -0.02 1.00 15 24 H 0.07 2.53 7.79 -2.39 -0.02 2.51 15 25 H 0.09 2.79 8.05 -2.39 -0.02 2.77 15 26 H 0.15 3.37 8.06 -2.91 -0.02 3.34 15 27 H 0.18 1.69 8.06 -2.91 -0.02 1.67 15 28 H 0.17 2.12 8.06 -2.91 -0.02 2.09 15 Total: -1.00 -66.29 259.82 5.26 -61.02 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.47 Total: 15.39 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 2.89 Total: -17.81 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -1.64 Total: -101.45 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 1.52 Total: -5.90 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -66.29 5.26 -61.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258849564.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.004 kcal (2) G-P(sol) polarization free energy of solvation -66.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds