Wall clock time and date at job start Mon Mar 30 2020 02:46:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86802 * 119.99741 * 2 1
4 4 H 1.48499 * 109.47195 * 239.99746 * 3 2 1
5 5 H 1.48506 * 109.47064 * 0.02562 * 3 2 1
6 6 H 1.48506 * 109.46974 * 119.99860 * 3 2 1
7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1
9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1
10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7
12 12 C 1.50703 * 109.46912 * 180.02562 * 11 10 9
13 13 C 1.38205 * 119.99664 * 264.72412 * 12 11 10
14 14 C 1.38432 * 119.99473 * 179.76905 * 13 12 11
15 15 F 1.35106 * 119.99999 * 180.27208 * 14 13 12
16 16 C 1.38472 * 120.00308 * 0.53097 * 14 13 12
17 17 C 1.38165 * 119.99635 * 359.72209 * 16 14 13
18 18 C 1.38420 * 120.00085 * 85.00081 * 12 11 10
19 19 F 1.35103 * 120.00346 * 359.97438 * 18 12 11
20 20 H 0.96993 * 120.00311 * 359.97438 * 1 2 3
21 21 H 0.97005 * 119.99550 * 0.02562 * 9 7 2
22 22 H 1.09001 * 109.46813 * 60.00266 * 10 9 7
23 23 H 1.08992 * 109.47397 * 300.00328 * 10 9 7
24 24 H 1.09002 * 109.47398 * 300.00326 * 11 10 9
25 25 H 1.09001 * 109.47194 * 60.00507 * 11 10 9
26 26 H 1.07999 * 120.00330 * 0.02562 * 13 12 11
27 27 H 1.08000 * 120.00156 * 179.70008 * 16 14 13
28 28 H 1.07995 * 119.99700 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1039 1.6965 -1.2124
5 1 1.2850 2.7465 0.0006
6 1 3.1039 1.6965 1.2126
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 7 1.3257 -2.3881 -0.0005
10 6 2.0583 -3.6568 -0.0005
11 6 1.0640 -4.8197 0.0001
12 6 1.8176 -6.1248 0.0007
13 6 2.0677 -6.7788 -1.1908
14 6 2.7641 -7.9752 -1.1906
15 9 3.0135 -8.6119 -2.3559
16 6 3.2005 -8.5222 0.0043
17 6 2.9458 -7.8709 1.1959
18 6 2.2542 -6.6713 1.1952
19 9 2.0053 -6.0345 2.3605
20 1 -0.4850 0.8400 0.0004
21 1 0.3556 -2.3881 -0.0005
22 1 2.6849 -3.7144 0.8895
23 1 2.6849 -3.7145 -0.8904
24 1 0.4376 -4.7618 0.8903
25 1 0.4371 -4.7622 -0.8897
26 1 1.7236 -6.3544 -2.1224
27 1 3.7396 -9.4581 0.0048
28 1 3.2858 -8.2978 2.1279
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000258849564.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:46:40
Heat of formation + Delta-G solvation = -82.027407 kcal
Electronic energy + Delta-G solvation = -14781.228759 eV
Core-core repulsion = 11853.348872 eV
Total energy + Delta-G solvation = -2927.879887 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-49.93152 -49.92625 -40.02148 -37.04759 -34.57980 -32.57399 -31.13140 -29.20656
-26.00588 -24.07108 -23.65611 -22.24890 -19.32670 -18.56532 -18.22933 -18.07688
-16.98693 -16.64554 -16.33371 -15.56491 -15.51829 -15.37208 -15.24193 -15.06395
-14.25768 -13.86260 -13.64186 -13.28945 -12.99136 -12.84552 -12.47494 -12.31658
-12.14964 -12.02675 -11.74905 -10.97142 -10.11383 -9.53567 -9.06542 -7.98204
-5.28837 -0.08341 0.03260 1.46301 1.50053 1.56303 2.33629 2.54506
3.11456 3.21341 3.35057 3.47399 3.65814 3.98703 4.10873 4.21069
4.30142 4.32110 4.63371 4.80942 4.92545 4.96021 5.02639 5.04251
5.17535 5.31326 5.45102 5.78891 6.23483 7.29783 8.02395 8.27711
9.25108
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.041874 B = 0.005395 C = 0.005097
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 668.515879 B = 5189.168933 C = 5491.905937
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.969 5.969
2 C -0.073 4.073
3 Si 0.978 3.022
4 H -0.276 1.276
5 H -0.292 1.292
6 H -0.277 1.277
7 C -0.254 4.254
8 H 0.075 0.925
9 N -0.747 5.747
10 C 0.162 3.838
11 C -0.080 4.080
12 C -0.087 4.087
13 C -0.126 4.126
14 C 0.083 3.917
15 F -0.139 7.139
16 C -0.119 4.119
17 C -0.114 4.114
18 C 0.073 3.927
19 F -0.145 7.145
20 H 0.253 0.747
21 H 0.376 0.624
22 H 0.013 0.987
23 H 0.024 0.976
24 H 0.072 0.928
25 H 0.087 0.913
26 H 0.151 0.849
27 H 0.177 0.823
28 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.968 -19.110 0.068 20.020
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.619 5.619
2 C -0.266 4.266
3 Si 0.806 3.194
4 H -0.202 1.202
5 H -0.218 1.218
6 H -0.203 1.203
7 C -0.385 4.385
8 H 0.093 0.907
9 N -0.390 5.390
10 C 0.036 3.964
11 C -0.117 4.117
12 C -0.089 4.089
13 C -0.145 4.145
14 C 0.064 3.936
15 F -0.118 7.118
16 C -0.137 4.137
17 C -0.132 4.132
18 C 0.053 3.947
19 F -0.123 7.123
20 H 0.062 0.938
21 H 0.208 0.792
22 H 0.031 0.969
23 H 0.042 0.958
24 H 0.090 0.910
25 H 0.106 0.894
26 H 0.169 0.831
27 H 0.195 0.805
28 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges 6.122 -19.006 0.067 19.968
hybrid contribution -0.206 1.193 0.002 1.211
sum 5.916 -17.813 0.069 18.770
Atomic orbital electron populations
1.69807 1.06651 1.26404 1.59022 1.25629 0.96491 1.01260 1.03207
0.85159 0.77228 0.78760 0.78288 1.20159 1.21810 1.20348 1.19602
0.91535 0.85329 1.42083 0.90748 1.42546 1.05735 1.01105 1.89600
1.20660 0.93683 0.84454 0.97623 1.20580 0.97429 0.89894 1.03838
1.19663 1.00192 0.96946 0.92100 1.21037 1.00056 0.94564 0.98830
1.17775 1.00932 0.92732 0.82197 1.91509 1.92503 1.81145 1.46641
1.21286 1.00964 1.02196 0.89254 1.21265 0.98285 0.92837 1.00862
1.17926 1.01919 0.93892 0.80928 1.91500 1.92529 1.81833 1.46464
0.93780 0.79218 0.96875 0.95766 0.90984 0.89444 0.83124 0.80523
0.80860
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -60.16 13.06 21.65 0.28 -59.88 15
2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 15
3 Si 0.98 46.72 29.55 68.60 2.03 48.74 15
4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15
5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 15
6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15
7 C -0.25 -14.69 9.99 84.03 0.84 -13.85 15
8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 15
9 N -0.75 -39.65 5.60 -343.46 -1.92 -41.57 15
10 C 0.16 6.85 6.24 86.38 0.54 7.39 15
11 C -0.08 -2.68 5.23 29.85 0.16 -2.53 15
12 C -0.09 -2.43 5.14 -19.83 -0.10 -2.54 15
13 C -0.13 -3.04 9.66 22.31 0.22 -2.82 15
14 C 0.08 1.74 7.30 22.37 0.16 1.91 15
15 F -0.14 -3.01 17.27 44.97 0.78 -2.24 15
16 C -0.12 -1.95 10.02 22.31 0.22 -1.73 15
17 C -0.11 -2.09 10.02 22.31 0.22 -1.87 15
18 C 0.07 1.90 7.24 22.37 0.16 2.06 15
19 F -0.14 -4.41 16.56 44.97 0.74 -3.66 15
20 H 0.25 15.18 8.31 -92.71 -0.77 14.41 15
21 H 0.38 20.86 7.67 -92.70 -0.71 20.15 15
22 H 0.01 0.58 8.14 -2.39 -0.02 0.56 15
23 H 0.02 1.02 8.14 -2.39 -0.02 1.00 15
24 H 0.07 2.53 7.79 -2.39 -0.02 2.51 15
25 H 0.09 2.79 8.05 -2.39 -0.02 2.77 15
26 H 0.15 3.37 8.06 -2.91 -0.02 3.34 15
27 H 0.18 1.69 8.06 -2.91 -0.02 1.67 15
28 H 0.17 2.12 8.06 -2.91 -0.02 2.09 15
Total: -1.00 -66.29 259.82 5.26 -61.02
By element:
Atomic # 1 Polarization: 14.92 SS G_CDS: 0.47 Total: 15.39 kcal
Atomic # 6 Polarization: -20.70 SS G_CDS: 2.89 Total: -17.81 kcal
Atomic # 7 Polarization: -99.81 SS G_CDS: -1.64 Total: -101.45 kcal
Atomic # 9 Polarization: -7.42 SS G_CDS: 1.52 Total: -5.90 kcal
Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal
Total: -66.29 5.26 -61.02 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258849564.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.004 kcal
(2) G-P(sol) polarization free energy of solvation -66.288 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.292 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.027 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds